RNA–Protein interactions for RNA: ENST00000252816.10

LSM4-201, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2 BASIC

Gene LSM4, Length 986 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-201ENST00000252816 SLFNL1Q499Z3 407 aa27.84■■■□□ 2.05
LSM4-201ENST00000252816 TSHZ3Q63HK5 1081 aa27.84■■■□□ 2.05
LSM4-201ENST00000252816 ABHD8Q96I13 439 aa27.84■■■□□ 2.05
LSM4-201ENST00000252816 PICK1Q9NRD5 415 aa27.84■■■□□ 2.05
LSM4-201ENST00000252816 FRMD4AQ9P2Q2 1039 aaPredicted RBP27.84■■■□□ 2.05
LSM4-201ENST00000252816 BTBD19C9JJ37 291 aa27.83■■■□□ 2.05
LSM4-201ENST00000252816 HERC5Q9UII4 1024 aaKnown RBP27.83■■■□□ 2.05
LSM4-201ENST00000252816 ZHX2Q9Y6X8 837 aa27.83■■■□□ 2.05
LSM4-201ENST00000252816 MAGEB6P1A0A0J9YX57 407 aa27.82■■■□□ 2.04
LSM4-201ENST00000252816 FKTNO75072 461 aa27.82■■■□□ 2.04
LSM4-201ENST00000252816 CHGBP05060 677 aa27.82■■■□□ 2.04
LSM4-201ENST00000252816 USP5P45974 858 aa27.82■■■□□ 2.04
LSM4-201ENST00000252816 ADD2P35612 726 aa27.81■■■□□ 2.04
LSM4-201ENST00000252816 MOGSQ13724 837 aa27.81■■■□□ 2.04
LSM4-201ENST00000252816 SLC4A8Q2Y0W8 1093 aa27.81■■■□□ 2.04
LSM4-201ENST00000252816 CTU1Q7Z7A3 348 aaKnown RBP27.81■■■□□ 2.04
LSM4-201ENST00000252816 CCDC84Q86UT8 332 aaPredicted RBP27.81■■■□□ 2.04
LSM4-201ENST00000252816 METTL16Q86W50 562 aaKnown RBP27.81■■■□□ 2.04
LSM4-201ENST00000252816 DNAJC18Q9H819 358 aa27.81■■■□□ 2.04
LSM4-201ENST00000252816 DOCK1Q14185 1865 aa27.81■■■□□ 2.04
LSM4-201ENST00000252816 CXCL11O14625 94 aa27.8■■■□□ 2.04
LSM4-201ENST00000252816 HDAC1Q13547 482 aaPredicted RBP27.8■■■□□ 2.04
LSM4-201ENST00000252816 TAF1CQ15572 869 aaPredicted RBP27.8■■■□□ 2.04
LSM4-201ENST00000252816 OTUD7AQ8TE49 926 aaPredicted RBP27.8■■■□□ 2.04
LSM4-201ENST00000252816 AFG3L2Q9Y4W6 797 aa27.8■■■□□ 2.04
LSM4-201ENST00000252816 SUPT16HQ9Y5B9 1047 aaKnown RBP27.8■■■□□ 2.04
LSM4-201ENST00000252816 FOXP4Q8IVH2 680 aaPredicted RBP27.79■■■□□ 2.04
LSM4-201ENST00000252816 EXOC6Q8TAG9 804 aa27.79■■■□□ 2.04
LSM4-201ENST00000252816 GPATCH3Q96I76 525 aa27.79■■■□□ 2.04
LSM4-201ENST00000252816 CAP2P40123 477 aa27.78■■■□□ 2.04
LSM4-201ENST00000252816 AAMPQ13685 434 aa27.78■■■□□ 2.04
LSM4-201ENST00000252816 LCORLQ8N3X6 602 aa27.78■■■□□ 2.04
LSM4-201ENST00000252816 DDX24Q9GZR7 859 aaKnown RBP eCLIP27.78■■■□□ 2.043e-8■■□□□ 14.5
LSM4-201ENST00000252816 ZCCHC17Q9NP64 241 aaKnown RBP27.78■■■□□ 2.04
LSM4-201ENST00000252816 CRACR2BQ8N4Y2 399 aaPredicted RBP27.77■■■□□ 2.04
LSM4-201ENST00000252816 ZFYVE28Q9HCC9 887 aa27.77■■■□□ 2.04
LSM4-201ENST00000252816 PHIPQ8WWQ0 1821 aa27.76■■■□□ 2.04
LSM4-201ENST00000252816 A0A0G2JLL6 359 aaPredicted RBP27.76■■■□□ 2.03
LSM4-201ENST00000252816 HLA-DOAP06340 250 aa27.76■■■□□ 2.03
LSM4-201ENST00000252816 PRRT2Q7Z6L0 340 aaPredicted RBP27.76■■■□□ 2.03
LSM4-201ENST00000252816 ANKRD23Q86SG2 305 aa27.76■■■□□ 2.03
LSM4-201ENST00000252816 CRNKL1Q9BZJ0 848 aaKnown RBP27.76■■■□□ 2.03
LSM4-201ENST00000252816 ARMT1Q9H993 441 aa27.76■■■□□ 2.03
LSM4-201ENST00000252816 MYH1P12882 1939 aa27.75■■■□□ 2.03
LSM4-201ENST00000252816 JAG1P78504 1218 aa27.75■■■□□ 2.03
LSM4-201ENST00000252816 UBE3CQ15386 1083 aa27.75■■■□□ 2.03
LSM4-201ENST00000252816 ANKRD45Q5TZF3 282 aa27.75■■■□□ 2.03
LSM4-201ENST00000252816 GPAT2Q6NUI2 795 aa27.75■■■□□ 2.03
LSM4-201ENST00000252816 TTC41PQ6P2S7 1318 aa27.74■■■□□ 2.03
LSM4-201ENST00000252816 TRIM75PA6NK02 468 aa27.74■■■□□ 2.03
LSM4-201ENST00000252816 MBD4O95243 580 aa27.74■■■□□ 2.03
LSM4-201ENST00000252816 SHROOM1Q2M3G4 852 aaPredicted RBP27.74■■■□□ 2.03
LSM4-201ENST00000252816 SDR42E1Q8WUS8 393 aa27.74■■■□□ 2.03
LSM4-201ENST00000252816 GCC1Q96CN9 775 aa27.74■■■□□ 2.03
LSM4-201ENST00000252816 PDHXO00330 501 aa27.73■■■□□ 2.03
LSM4-201ENST00000252816 CAP1Q01518 475 aa27.73■■■□□ 2.03
LSM4-201ENST00000252816 KBTBD3Q8NAB2 608 aa27.73■■■□□ 2.03
LSM4-201ENST00000252816 PI4K2BQ8TCG2 481 aa27.73■■■□□ 2.03
LSM4-201ENST00000252816 TRIM34Q9BYJ4 488 aa27.73■■■□□ 2.03
LSM4-201ENST00000252816 DDX60LQ5H9U9 1706 aaKnown RBP27.72■■■□□ 2.03
LSM4-201ENST00000252816 SALL3Q9BXA9 1300 aa27.72■■■□□ 2.03
LSM4-201ENST00000252816 ATAD5Q96QE3 1844 aa27.72■■■□□ 2.03
LSM4-201ENST00000252816 TLR2O60603 784 aa27.72■■■□□ 2.03
LSM4-201ENST00000252816 PLCD1P51178 756 aa27.72■■■□□ 2.03
LSM4-201ENST00000252816 SP3Q02447 781 aa27.72■■■□□ 2.03
LSM4-201ENST00000252816 CD99L2Q8TCZ2 262 aa27.72■■■□□ 2.03
LSM4-201ENST00000252816 EHD4Q9H223 541 aa27.72■■■□□ 2.03
LSM4-201ENST00000252816 DCP1AQ9NPI6 582 aaPredicted RBP27.72■■■□□ 2.03
LSM4-201ENST00000252816 SERPINB13Q9UIV8 391 aa27.72■■■□□ 2.03
LSM4-201ENST00000252816 MYH7P12883 1935 aa27.72■■■□□ 2.03
LSM4-201ENST00000252816 PRKAB2O43741 272 aa27.71■■■□□ 2.03
LSM4-201ENST00000252816 GDF11O95390 407 aa27.71■■■□□ 2.03
LSM4-201ENST00000252816 MX1P20591 662 aa27.71■■■□□ 2.03
LSM4-201ENST00000252816 EVX2Q03828 476 aa27.71■■■□□ 2.03
LSM4-201ENST00000252816 ZSCAN25Q6NSZ9 544 aa27.71■■■□□ 2.03
LSM4-201ENST00000252816 FASTKD5Q7L8L6 764 aaKnown RBP27.71■■■□□ 2.03
LSM4-201ENST00000252816 TTC6Q86TZ1 520 aa27.71■■■□□ 2.03
LSM4-201ENST00000252816 PUS7LQ9H0K6 701 aaKnown RBP27.71■■■□□ 2.03
LSM4-201ENST00000252816 PTPRFP10586 1907 aa27.71■■■□□ 2.03
LSM4-201ENST00000252816 USP17L5A8MUK1 530 aa27.7■■■□□ 2.02
LSM4-201ENST00000252816 SPP2Q13103 211 aa27.7■■■□□ 2.02
LSM4-201ENST00000252816 GADL1Q6ZQY3 521 aa27.7■■■□□ 2.02
LSM4-201ENST00000252816 ZNF280CQ8ND82 737 aa27.7■■■□□ 2.02
LSM4-201ENST00000252816 ERO1AQ96HE7 468 aa27.7■■■□□ 2.02
LSM4-201ENST00000252816 MCM9Q9NXL9 1143 aa27.7■■■□□ 2.02
LSM4-201ENST00000252816 NAV1Q8NEY1 1877 aa27.7■■■□□ 2.02
LSM4-201ENST00000252816 CCDC85CA6NKD9 419 aa27.69■■■□□ 2.02
LSM4-201ENST00000252816 ERC2O15083 957 aa27.69■■■□□ 2.02
LSM4-201ENST00000252816 GLRX3O76003 335 aaKnown RBP27.69■■■□□ 2.02
LSM4-201ENST00000252816 POLR3DP05423 398 aaPredicted RBP27.69■■■□□ 2.02
LSM4-201ENST00000252816 ASNSP08243 561 aa27.69■■■□□ 2.02
LSM4-201ENST00000252816 PKN2Q16513 984 aaKnown RBP27.69■■■□□ 2.02
LSM4-201ENST00000252816 TATDN1Q6P1N9 297 aa27.69■■■□□ 2.02
LSM4-201ENST00000252816 ADGRA2Q96PE1 1338 aa27.68■■■□□ 2.02
LSM4-201ENST00000252816 IGHDP01880 384 aa27.68■■■□□ 2.02
LSM4-201ENST00000252816 OTOP1Q7RTM1 612 aa27.68■■■□□ 2.02
LSM4-201ENST00000252816 TBC1D2Q9BYX2 928 aa27.68■■■□□ 2.02
LSM4-201ENST00000252816 RWDD1Q9H446 243 aaPredicted RBP27.68■■■□□ 2.02
LSM4-201ENST00000252816 ZBTB47Q9UFB7 747 aaPredicted RBP27.68■■■□□ 2.02
LSM4-201ENST00000252816 ZBTB21Q9ULJ3 1066 aa27.68■■■□□ 2.02
Retrieved 100 of 20,778 RNA–protein pairs in 8.6 ms