RNA–Protein interactions for RNA: ENST00000211998.9

VCL-201, Transcript of vinculin, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene VCL, Length 5,490 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCL-201ENST00000211998 EIF3CLB5ME19 914 aaKnown RBP11.64□□□□□ -0.55
VCL-201ENST00000211998 CYP7A1P22680 504 aa11.64□□□□□ -0.55
VCL-201ENST00000211998 KRT9P35527 623 aa11.64□□□□□ -0.55
VCL-201ENST00000211998 ZNF518AQ6AHZ1 1483 aa11.64□□□□□ -0.55
VCL-201ENST00000211998 CHST3Q7LGC8 479 aa11.64□□□□□ -0.55
VCL-201ENST00000211998 CNPY4Q8N129 248 aa11.64□□□□□ -0.55
VCL-201ENST00000211998 NLRP3Q96P20 1036 aa11.64□□□□□ -0.55
VCL-201ENST00000211998 EIF3CQ99613 913 aaKnown RBP11.64□□□□□ -0.55
VCL-201ENST00000211998 PARD3Q8TEW0 1356 aa11.64□□□□□ -0.55
VCL-201ENST00000211998 PLCB3Q01970 1234 aa11.64□□□□□ -0.55
VCL-201ENST00000211998 TCP11Q8WWU5 503 aa11.64□□□□□ -0.55
VCL-201ENST00000211998 FERMT1Q9BQL6 677 aa11.64□□□□□ -0.55
VCL-201ENST00000211998 LARSQ9P2J5 1176 aaKnown RBP11.64□□□□□ -0.55
VCL-201ENST00000211998 NFE2L3Q9Y4A8 694 aa11.64□□□□□ -0.55
VCL-201ENST00000211998 ATP2A2P16615 1042 aaKnown RBP11.63□□□□□ -0.55
VCL-201ENST00000211998 IFIT1BQ5T764 474 aaKnown RBP11.63□□□□□ -0.55
VCL-201ENST00000211998 SAAL1Q96ER3 474 aa11.63□□□□□ -0.55
VCL-201ENST00000211998 SOS1Q07889 1333 aaPredicted RBP11.63□□□□□ -0.55
VCL-201ENST00000211998 GNAT2P19087 354 aa11.63□□□□□ -0.55
VCL-201ENST00000211998 KLHL14Q9P2G3 628 aa11.63□□□□□ -0.55
VCL-201ENST00000211998 ATP6V0A2Q9Y487 856 aa11.63□□□□□ -0.55
VCL-201ENST00000211998 FLT4P35916 1363 aa11.63□□□□□ -0.55
VCL-201ENST00000211998 DTNBO60941 627 aa11.63□□□□□ -0.55
VCL-201ENST00000211998 RTN1Q16799 776 aa11.63□□□□□ -0.55
VCL-201ENST00000211998 ZNF804AQ7Z570 1209 aa11.63□□□□□ -0.55
VCL-201ENST00000211998 CCDC97Q96F63 343 aaPredicted RBP11.63□□□□□ -0.55
VCL-201ENST00000211998 SLC4A4Q9Y6R1 1079 aa11.63□□□□□ -0.55
VCL-201ENST00000211998 ZNF202O95125 648 aa11.63□□□□□ -0.55
VCL-201ENST00000211998 CALM1P0DP23 149 aa11.63□□□□□ -0.55
VCL-201ENST00000211998 CALM2P0DP24 149 aa11.63□□□□□ -0.55
VCL-201ENST00000211998 CALM3P0DP25 149 aa11.63□□□□□ -0.55
VCL-201ENST00000211998 SEL1L2Q5TEA6 688 aa11.63□□□□□ -0.55
VCL-201ENST00000211998 KCTD16Q68DU8 428 aa11.63□□□□□ -0.55
VCL-201ENST00000211998 CDC37L1Q7L3B6 337 aa11.63□□□□□ -0.55
VCL-201ENST00000211998 SDCCAG8Q86SQ7 713 aaPredicted RBP11.63□□□□□ -0.55
VCL-201ENST00000211998 MRRFQ96E11 262 aaKnown RBP11.63□□□□□ -0.55
VCL-201ENST00000211998 NUF2Q9BZD4 464 aa11.63□□□□□ -0.55
VCL-201ENST00000211998 TTC41PQ6P2S7 1318 aa11.63□□□□□ -0.55
VCL-201ENST00000211998 GYS2P54840 703 aa11.63□□□□□ -0.55
VCL-201ENST00000211998 COPS6Q7L5N1 327 aa11.63□□□□□ -0.55
VCL-201ENST00000211998 CHAMP1Q96JM3 812 aa11.63□□□□□ -0.55
VCL-201ENST00000211998 TSC22D3Q99576 134 aa11.63□□□□□ -0.55
VCL-201ENST00000211998 NOC4LQ9BVI4 516 aaKnown RBP11.63□□□□□ -0.55
VCL-201ENST00000211998 KCNH3Q9ULD8 1083 aa11.63□□□□□ -0.55
VCL-201ENST00000211998 SYNRGQ9UMZ2 1314 aa11.62□□□□□ -0.55
VCL-201ENST00000211998 CEP104O60308 925 aa11.62□□□□□ -0.55
VCL-201ENST00000211998 TOM1O60784 492 aa11.62□□□□□ -0.55
VCL-201ENST00000211998 SRGAP1Q7Z6B7 1085 aa11.62□□□□□ -0.55
VCL-201ENST00000211998 MLKLQ8NB16 471 aa11.62□□□□□ -0.55
VCL-201ENST00000211998 ANTXR1Q9H6X2 564 aa11.62□□□□□ -0.55
VCL-201ENST00000211998 STX8Q9UNK0 236 aa11.62□□□□□ -0.55
VCL-201ENST00000211998 SNX14Q9Y5W7 946 aa11.62□□□□□ -0.55
VCL-201ENST00000211998 ZFYVE9O95405 1425 aa11.62□□□□□ -0.55
VCL-201ENST00000211998 POLR3AO14802 1390 aaPredicted RBP11.62□□□□□ -0.55
VCL-201ENST00000211998 MCM7P33993 719 aa11.62□□□□□ -0.55
VCL-201ENST00000211998 UAP1Q16222 522 aaPredicted RBP11.62□□□□□ -0.55
VCL-201ENST00000211998 HHATQ5VTY9 493 aa11.62□□□□□ -0.55
VCL-201ENST00000211998 ANKRD42Q8N9B4 389 aa11.62□□□□□ -0.55
VCL-201ENST00000211998 RTL9Q8NET4 1388 aa11.62□□□□□ -0.55
VCL-201ENST00000211998 GUCY2CP25092 1073 aa11.62□□□□□ -0.55
VCL-201ENST00000211998 NAA16Q6N069 864 aaPredicted RBP11.62□□□□□ -0.55
VCL-201ENST00000211998 OTUD7AQ8TE49 926 aaPredicted RBP11.62□□□□□ -0.55
VCL-201ENST00000211998 ZMAT2Q96NC0 199 aaKnown RBP11.62□□□□□ -0.55
VCL-201ENST00000211998 IRAK4Q9NWZ3 460 aa11.62□□□□□ -0.55
VCL-201ENST00000211998 SUFUQ9UMX1 484 aa11.62□□□□□ -0.55
VCL-201ENST00000211998 RGS16O15492 202 aaPredicted RBP11.62□□□□□ -0.55
VCL-201ENST00000211998 EEF2P13639 858 aaKnown RBP11.62□□□□□ -0.55
VCL-201ENST00000211998 ANO1Q5XXA6 986 aa11.62□□□□□ -0.55
VCL-201ENST00000211998 DHX32Q7L7V1 743 aaKnown RBP11.62□□□□□ -0.55
VCL-201ENST00000211998 IQUBQ8NA54 791 aa11.62□□□□□ -0.55
VCL-201ENST00000211998 NCAPGQ9BPX3 1015 aa11.62□□□□□ -0.55
VCL-201ENST00000211998 WWC3Q9ULE0 1092 aa11.62□□□□□ -0.55
VCL-201ENST00000211998 MAPKBP1O60336 1514 aa11.62□□□□□ -0.55
VCL-201ENST00000211998 PLCG2P16885 1265 aa11.61□□□□□ -0.55
VCL-201ENST00000211998 HSPA1LP34931 641 aa11.61□□□□□ -0.55
VCL-201ENST00000211998 BICD1Q96G01 975 aa11.61□□□□□ -0.55
VCL-201ENST00000211998 IBTKQ9P2D0 1353 aaPredicted RBP11.61□□□□□ -0.55
VCL-201ENST00000211998 BAG2O95816 211 aa11.61□□□□□ -0.55
VCL-201ENST00000211998 PSMD6Q15008 389 aa11.61□□□□□ -0.55
VCL-201ENST00000211998 TAF11Q15544 211 aa11.61□□□□□ -0.55
VCL-201ENST00000211998 DENND2CQ68D51 928 aa11.61□□□□□ -0.55
VCL-201ENST00000211998 LINS1Q8NG48 757 aa11.61□□□□□ -0.55
VCL-201ENST00000211998 PPP1R9AQ9ULJ8 1098 aa11.61□□□□□ -0.55
VCL-201ENST00000211998 BICRAQ9NZM4 1560 aa11.61□□□□□ -0.55
VCL-201ENST00000211998 LMBR1LQ6UX01 489 aa11.61□□□□□ -0.55
VCL-201ENST00000211998 PARD6BQ9BYG5 372 aa11.61□□□□□ -0.55
VCL-201ENST00000211998 UGGT2Q9NYU1 1516 aa11.61□□□□□ -0.55
VCL-201ENST00000211998 PPFIA2O75334 1257 aa11.61□□□□□ -0.55
VCL-201ENST00000211998 STX2P32856 288 aa11.61□□□□□ -0.55
VCL-201ENST00000211998 ANKRD20A3Q5VUR7 823 aa11.61□□□□□ -0.55
VCL-201ENST00000211998 CACTINQ8WUQ7 758 aaKnown RBP11.61□□□□□ -0.55
VCL-201ENST00000211998 CHUKO15111 745 aa11.6□□□□□ -0.55
VCL-201ENST00000211998 NR1I2O75469 434 aa11.6□□□□□ -0.55
VCL-201ENST00000211998 RPS6KB1P23443 525 aa11.6□□□□□ -0.55
VCL-201ENST00000211998 MAGEA1P43355 309 aa11.6□□□□□ -0.55
VCL-201ENST00000211998 TMEM87AQ8NBN3 555 aa11.6□□□□□ -0.55
VCL-201ENST00000211998 SPTLC3Q9NUV7 552 aa11.6□□□□□ -0.55
VCL-201ENST00000211998 COMMD10Q9Y6G5 202 aa11.6□□□□□ -0.55
VCL-201ENST00000211998 ZNF608Q9ULD9 1512 aaPredicted RBP11.6□□□□□ -0.55
VCL-201ENST00000211998 ANXA1P04083 346 aa11.6□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms