RNA–Protein interactions for RNA: ENST00000003302.8

USP28-201, Transcript of ubiquitin specific peptidase 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP28, Length 4,669 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-201ENST00000003302 PARP3Q9Y6F1 533 aa12.32□□□□□ -0.44
USP28-201ENST00000003302 MORC2Q9Y6X9 1032 aaPredicted RBP12.32□□□□□ -0.44
USP28-201ENST00000003302 SUSD4Q5VX71 490 aa12.32□□□□□ -0.44
USP28-201ENST00000003302 HOMER1Q86YM7 354 aa12.32□□□□□ -0.44
USP28-201ENST00000003302 SUGCTQ9HAC7 445 aa12.32□□□□□ -0.44
USP28-201ENST00000003302 OGFRQ9NZT2 677 aa12.32□□□□□ -0.44
USP28-201ENST00000003302 SLU7O95391 586 aaKnown RBP12.32□□□□□ -0.44
USP28-201ENST00000003302 AFMP43652 599 aa12.32□□□□□ -0.44
USP28-201ENST00000003302 SOWAHDA6NJG2 315 aa12.32□□□□□ -0.44
USP28-201ENST00000003302 IARSP41252 1262 aaKnown RBP12.32□□□□□ -0.44
USP28-201ENST00000003302 PLA2G4AP47712 749 aa12.32□□□□□ -0.44
USP28-201ENST00000003302 KRBA2Q6ZNG9 492 aa12.32□□□□□ -0.44
USP28-201ENST00000003302 GPIHBP1Q8IV16 184 aa12.32□□□□□ -0.44
USP28-201ENST00000003302 TC2NQ8N9U0 490 aa12.32□□□□□ -0.44
USP28-201ENST00000003302 CNNM3Q8NE01 707 aa12.32□□□□□ -0.44
USP28-201ENST00000003302 NFE2L3Q9Y4A8 694 aa12.32□□□□□ -0.44
USP28-201ENST00000003302 MAP3K15Q6ZN16 1313 aa12.32□□□□□ -0.44
USP28-201ENST00000003302 PLEKHA8P1O95397 391 aa12.31□□□□□ -0.44
USP28-201ENST00000003302 NKX1-1Q15270 411 aaPredicted RBP12.31□□□□□ -0.44
USP28-201ENST00000003302 AIDAQ96BJ3 306 aa12.31□□□□□ -0.44
USP28-201ENST00000003302 CABP5Q9NP86 173 aa12.31□□□□□ -0.44
USP28-201ENST00000003302 FBXO2Q9UK22 296 aaPredicted RBP12.31□□□□□ -0.44
USP28-201ENST00000003302 URI1O94763 535 aaPredicted RBP12.31□□□□□ -0.44
USP28-201ENST00000003302 CYP19A1P11511 503 aaPredicted RBP12.31□□□□□ -0.44
USP28-201ENST00000003302 ACSBG1Q96GR2 724 aa12.31□□□□□ -0.44
USP28-201ENST00000003302 CSRNP2Q9H175 543 aa12.31□□□□□ -0.44
USP28-201ENST00000003302 SPEF2Q9C093 1822 aa12.31□□□□□ -0.44
USP28-201ENST00000003302 H2AFXP16104 143 aaPredicted RBP12.31□□□□□ -0.44
USP28-201ENST00000003302 DYNLL1P63167 89 aaKnown RBP12.31□□□□□ -0.44
USP28-201ENST00000003302 GNL2Q13823 731 aaKnown RBP12.31□□□□□ -0.44
USP28-201ENST00000003302 CGNQ9P2M7 1197 aaKnown RBP12.31□□□□□ -0.44
USP28-201ENST00000003302 MINDY4BA8MYZ0 360 aa12.31□□□□□ -0.44
USP28-201ENST00000003302 APTXQ7Z2E3 356 aaKnown RBP12.31□□□□□ -0.44
USP28-201ENST00000003302 BRAPQ7Z569 592 aa12.31□□□□□ -0.44
USP28-201ENST00000003302 BTG4Q9NY30 223 aa12.31□□□□□ -0.44
USP28-201ENST00000003302 MAPK8IP1Q9UQF2 711 aa12.31□□□□□ -0.44
USP28-201ENST00000003302 GYG1P46976 350 aa12.3□□□□□ -0.44
USP28-201ENST00000003302 VSTM4Q8IW00 320 aa12.3□□□□□ -0.44
USP28-201ENST00000003302 SPATA5Q8NB90 893 aa12.3□□□□□ -0.44
USP28-201ENST00000003302 FAM53CQ9NYF3 392 aa12.3□□□□□ -0.44
USP28-201ENST00000003302 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP12.3□□□□□ -0.44
USP28-201ENST00000003302 MYH8P13535 1937 aa12.3□□□□□ -0.44
USP28-201ENST00000003302 ZNF335Q9H4Z2 1342 aaPredicted RBP12.3□□□□□ -0.44
USP28-201ENST00000003302 PDIA4P13667 645 aaKnown RBP12.3□□□□□ -0.44
USP28-201ENST00000003302 FGFR2P21802 821 aa12.3□□□□□ -0.44
USP28-201ENST00000003302 MYL5Q02045 173 aa12.3□□□□□ -0.44
USP28-201ENST00000003302 TERF2Q15554 542 aa12.3□□□□□ -0.44
USP28-201ENST00000003302 UTP14CQ5TAP6 766 aaKnown RBP12.3□□□□□ -0.44
USP28-201ENST00000003302 MTRQ99707 1265 aa12.3□□□□□ -0.44
USP28-201ENST00000003302 NUP98P52948 1817 aa12.3□□□□□ -0.44
USP28-201ENST00000003302 KCTD19Q17RG1 926 aaPredicted RBP12.3□□□□□ -0.44
USP28-201ENST00000003302 WWC2Q6AWC2 1192 aa12.3□□□□□ -0.44
USP28-201ENST00000003302 ZNF771Q7L3S4 317 aaPredicted RBP12.3□□□□□ -0.44
USP28-201ENST00000003302 NOSTRINQ8IVI9 506 aa12.3□□□□□ -0.44
USP28-201ENST00000003302 PAPPAQ13219 1627 aa12.3□□□□□ -0.44
USP28-201ENST00000003302 ETF1P62495 437 aaKnown RBP12.29□□□□□ -0.44
USP28-201ENST00000003302 ST5P78524 1137 aa12.29□□□□□ -0.44
USP28-201ENST00000003302 MAPK8IP2Q13387 824 aaPredicted RBP12.29□□□□□ -0.44
USP28-201ENST00000003302 PPIL4Q8WUA2 492 aaKnown RBP eCLIP12.29□□□□□ -0.44
USP28-201ENST00000003302 CCDC34Q96HJ3 373 aa12.29□□□□□ -0.44
USP28-201ENST00000003302 COL1A1P02452 1464 aaPredicted RBP12.29□□□□□ -0.44
USP28-201ENST00000003302 EVA1CP58658 441 aa12.29□□□□□ -0.44
USP28-201ENST00000003302 TRDNQ13061 729 aa12.29□□□□□ -0.44
USP28-201ENST00000003302 PTF1AQ7RTS3 328 aa12.29□□□□□ -0.44
USP28-201ENST00000003302 ZNF397Q8NF99 534 aaPredicted RBP12.29□□□□□ -0.44
USP28-201ENST00000003302 ERO1AQ96HE7 468 aa12.29□□□□□ -0.44
USP28-201ENST00000003302 NAT10Q9H0A0 1025 aaKnown RBP12.29□□□□□ -0.44
USP28-201ENST00000003302 NAPBQ9H115 298 aa12.29□□□□□ -0.44
USP28-201ENST00000003302 BLZF1Q9H2G9 400 aa12.29□□□□□ -0.44
USP28-201ENST00000003302 ABCF2Q9UG63 623 aa12.29□□□□□ -0.44
USP28-201ENST00000003302 AKAP2Q9Y2D5 859 aa12.29□□□□□ -0.44
USP28-201ENST00000003302 CHD4Q14839 1912 aa12.29□□□□□ -0.44
USP28-201ENST00000003302 CAVIN2O95810 425 aa12.29□□□□□ -0.44
USP28-201ENST00000003302 LZTFL1Q9NQ48 299 aa12.29□□□□□ -0.44
USP28-201ENST00000003302 SLC12A7Q9Y666 1083 aa12.29□□□□□ -0.44
USP28-201ENST00000003302 MYH13Q9UKX3 1938 aa12.29□□□□□ -0.44
USP28-201ENST00000003302 ANKRD18BA2A2Z9 1011 aa12.29□□□□□ -0.44
USP28-201ENST00000003302 POLR3GO15318 223 aaPredicted RBP12.29□□□□□ -0.44
USP28-201ENST00000003302 ZRSR1Q15695 479 aaKnown RBP12.29□□□□□ -0.44
USP28-201ENST00000003302 RAD9BQ6WBX8 426 aa12.29□□□□□ -0.44
USP28-201ENST00000003302 DHX58Q96C10 678 aa12.29□□□□□ -0.44
USP28-201ENST00000003302 HINFPQ9BQA5 517 aa12.29□□□□□ -0.44
USP28-201ENST00000003302 BPIFA3Q9BQP9 254 aa12.29□□□□□ -0.44
USP28-201ENST00000003302 STRCQ7RTU9 1775 aa12.29□□□□□ -0.44
USP28-201ENST00000003302 MMP1P03956 469 aa12.28□□□□□ -0.44
USP28-201ENST00000003302 KIF6Q6ZMV9 814 aa12.28□□□□□ -0.44
USP28-201ENST00000003302 PPP2R2CQ9Y2T4 447 aa12.28□□□□□ -0.44
USP28-201ENST00000003302 ITGB4P16144 1822 aa12.28□□□□□ -0.44
USP28-201ENST00000003302 ACTN4O43707 911 aaKnown RBP12.28□□□□□ -0.44
USP28-201ENST00000003302 PNMA6AP0CW24 399 aaPredicted RBP12.28□□□□□ -0.44
USP28-201ENST00000003302 PKN1Q16512 942 aa12.28□□□□□ -0.44
USP28-201ENST00000003302 MYH14Q7Z406 1995 aaKnown RBP12.28□□□□□ -0.44
USP28-201ENST00000003302 ZFYP08048 801 aaPredicted RBP12.28□□□□□ -0.44
USP28-201ENST00000003302 ZNF18P17022 549 aa12.28□□□□□ -0.44
USP28-201ENST00000003302 NPY5RQ15761 445 aa12.28□□□□□ -0.44
USP28-201ENST00000003302 SLC4A4Q9Y6R1 1079 aa12.28□□□□□ -0.44
USP28-201ENST00000003302 TRIM28Q13263 835 aaKnown RBP12.28□□□□□ -0.44
USP28-201ENST00000003302 ATL3Q6DD88 541 aa12.28□□□□□ -0.44
USP28-201ENST00000003302 CADPS2Q86UW7 1296 aa12.28□□□□□ -0.44
USP28-201ENST00000003302 DZIP3Q86Y13 1208 aaKnown RBP12.28□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms