RNA–Protein interactions for RNA: ENSMUST00000062439.4

Ccdc54-201, Transcript of Coiled-coil domain-containing protein 54, mousemouse

APPRIS P1 BASIC

Gene Ccdc54, Length 1,296 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc54-201ENSMUST00000062439 Col4a3bpQ9EQG9 624 aa10.23□□□□□ -0.77
Ccdc54-201ENSMUST00000062439 Sbno2Q7TNB8 1349 aa10.23□□□□□ -0.77
Ccdc54-201ENSMUST00000062439 Zfp612A0A1D5RMC2 672 aa10.22□□□□□ -0.77
Ccdc54-201ENSMUST00000062439 Gm28038F7BCN9 126 aa10.22□□□□□ -0.77
Ccdc54-201ENSMUST00000062439 Grm2Q14BI2 872 aa10.22□□□□□ -0.77
Ccdc54-201ENSMUST00000062439 Serpinb3dQ6UKZ0 387 aa10.22□□□□□ -0.77
Ccdc54-201ENSMUST00000062439 Q8BP99 230 aa10.22□□□□□ -0.77
Ccdc54-201ENSMUST00000062439 Gpcpd1Q8C0L9 675 aa10.22□□□□□ -0.77
Ccdc54-201ENSMUST00000062439 ItchQ8C863 864 aa10.22□□□□□ -0.77
Ccdc54-201ENSMUST00000062439 Amotl2Q8K371 772 aa10.22□□□□□ -0.77
Ccdc54-201ENSMUST00000062439 Cdpf1Q8R3A2 119 aa10.22□□□□□ -0.77
Ccdc54-201ENSMUST00000062439 NaspQ99MD9 773 aaKnown RBP10.22□□□□□ -0.77
Ccdc54-201ENSMUST00000062439 Antxr1Q9CZ52 562 aa10.22□□□□□ -0.77
Ccdc54-201ENSMUST00000062439 Mss51Q9D5Z5 446 aa10.22□□□□□ -0.77
Ccdc54-201ENSMUST00000062439 Gm36028A0A0U1RPM1 299 aa10.21□□□□□ -0.77
Ccdc54-201ENSMUST00000062439 Spocd1B1ASB6 936 aa10.21□□□□□ -0.77
Ccdc54-201ENSMUST00000062439 Zp3rQ60736 579 aa10.21□□□□□ -0.77
Ccdc54-201ENSMUST00000062439 GphnQ8BUV3 769 aaKnown RBP10.21□□□□□ -0.77
Ccdc54-201ENSMUST00000062439 Habp2Q8K0D2 558 aa10.21□□□□□ -0.77
Ccdc54-201ENSMUST00000062439 Actrt2Q9D9L5 377 aa10.21□□□□□ -0.77
Ccdc54-201ENSMUST00000062439 Abca16E9PWJ7 1678 aa10.2□□□□□ -0.78
Ccdc54-201ENSMUST00000062439 Phldb3E9QAF4 648 aa10.2□□□□□ -0.78
Ccdc54-201ENSMUST00000062439 Lin7bO88951 207 aa10.2□□□□□ -0.78
Ccdc54-201ENSMUST00000062439 CenpbP27790 599 aa10.2□□□□□ -0.78
Ccdc54-201ENSMUST00000062439 Adamts18Q4VC17 1219 aa10.2□□□□□ -0.78
Ccdc54-201ENSMUST00000062439 FcrlbQ5DRQ8 427 aa10.2□□□□□ -0.78
Ccdc54-201ENSMUST00000062439 Fgd6Q69ZL1 1399 aa10.2□□□□□ -0.78
Ccdc54-201ENSMUST00000062439 Gm9913Q8BQQ2 135 aa10.2□□□□□ -0.78
Ccdc54-201ENSMUST00000062439 Gtf2h3Q8VD76 309 aa10.2□□□□□ -0.78
Ccdc54-201ENSMUST00000062439 YarsQ91WQ3 528 aaKnown RBP10.2□□□□□ -0.78
Ccdc54-201ENSMUST00000062439 D930007J09RikQ9D2K6 131 aa10.2□□□□□ -0.78
Ccdc54-201ENSMUST00000062439 Chd1P40201 1711 aa10.19□□□□□ -0.78
Ccdc54-201ENSMUST00000062439 Tgfbr3lD3YZZ2 297 aa10.19□□□□□ -0.78
Ccdc54-201ENSMUST00000062439 Usp17ldG5E8G2 545 aa10.19□□□□□ -0.78
Ccdc54-201ENSMUST00000062439 Usp17lcG5E8I7 545 aa10.19□□□□□ -0.78
Ccdc54-201ENSMUST00000062439 Gas2P11862 314 aaKnown RBP10.19□□□□□ -0.78
Ccdc54-201ENSMUST00000062439 Uba1yP31254 1058 aa10.19□□□□□ -0.78
Ccdc54-201ENSMUST00000062439 Sash1P59808 1230 aa10.19□□□□□ -0.78
Ccdc54-201ENSMUST00000062439 Fscn2Q32M02 492 aa10.19□□□□□ -0.78
Ccdc54-201ENSMUST00000062439 Foxred2Q3USW5 665 aa10.19□□□□□ -0.78
Ccdc54-201ENSMUST00000062439 U2surpQ6NV83 1029 aaKnown RBP10.19□□□□□ -0.78
Ccdc54-201ENSMUST00000062439 HomezQ80W88 542 aa10.19□□□□□ -0.78
Ccdc54-201ENSMUST00000062439 Pqlc1Q80XM9 271 aa10.19□□□□□ -0.78
Ccdc54-201ENSMUST00000062439 Olfr127Q8VF25 323 aa10.19□□□□□ -0.78
Ccdc54-201ENSMUST00000062439 Olfr799Q8VGI7 311 aa10.19□□□□□ -0.78
Ccdc54-201ENSMUST00000062439 St7Q99M96 577 aa10.19□□□□□ -0.78
Ccdc54-201ENSMUST00000062439 Gpn3Q9D3W4 284 aa10.19□□□□□ -0.78
Ccdc54-201ENSMUST00000062439 Kbtbd12Q9D618 625 aa10.19□□□□□ -0.78
Ccdc54-201ENSMUST00000062439 Fcn1O70165 334 aa10.18□□□□□ -0.78
Ccdc54-201ENSMUST00000062439 Gm732Q3V0P9 516 aa10.18□□□□□ -0.78
Ccdc54-201ENSMUST00000062439 Gm5431Q5NCB3 844 aa10.18□□□□□ -0.78
Ccdc54-201ENSMUST00000062439 9930111J21Rik1Q5SVP0 844 aa10.18□□□□□ -0.78
Ccdc54-201ENSMUST00000062439 Kat7Q5SVQ0 613 aaKnown RBP10.18□□□□□ -0.78
Ccdc54-201ENSMUST00000062439 FdxrQ61578 494 aa10.18□□□□□ -0.78
Ccdc54-201ENSMUST00000062439 Q6DIA7 600 aa10.18□□□□□ -0.78
Ccdc54-201ENSMUST00000062439 Krba1Q6NXZ1 1043 aa10.18□□□□□ -0.78
Ccdc54-201ENSMUST00000062439 Znf513Q6PD29 541 aa10.18□□□□□ -0.78
Ccdc54-201ENSMUST00000062439 MtbpQ8BJS8 894 aaKnown RBP10.18□□□□□ -0.78
Ccdc54-201ENSMUST00000062439 Polr2bQ8CFI7 1174 aaKnown RBP10.18□□□□□ -0.78
Ccdc54-201ENSMUST00000062439 ApobrQ8VBT6 942 aa10.18□□□□□ -0.78
Ccdc54-201ENSMUST00000062439 Capn10Q9ESK3 666 aa10.18□□□□□ -0.78
Ccdc54-201ENSMUST00000062439 Gm29094F6Q785 221 aa10.17□□□□□ -0.78
Ccdc54-201ENSMUST00000062439 Ksr1Q61097 873 aa10.17□□□□□ -0.78
Ccdc54-201ENSMUST00000062439 DaglaQ6WQJ1 1044 aa10.17□□□□□ -0.78
Ccdc54-201ENSMUST00000062439 Tmem67Q8BR76 992 aa10.17□□□□□ -0.78
Ccdc54-201ENSMUST00000062439 Fam53cQ8BXQ8 393 aa10.17□□□□□ -0.78
Ccdc54-201ENSMUST00000062439 Phc3Q8CHP6 981 aa10.17□□□□□ -0.78
Ccdc54-201ENSMUST00000062439 Dnttip2Q8R2M2 758 aaKnown RBP10.17□□□□□ -0.78
Ccdc54-201ENSMUST00000062439 Coa3Q9D2R6 108 aa10.17□□□□□ -0.78
Ccdc54-201ENSMUST00000062439 WizO88286 1684 aaKnown RBP10.17□□□□□ -0.78
Ccdc54-201ENSMUST00000062439 Dnmt1P13864 1620 aaKnown RBP10.17□□□□□ -0.78
Ccdc54-201ENSMUST00000062439 TchhA0A0B4J1F9 1599 aa10.17□□□□□ -0.78
Ccdc54-201ENSMUST00000062439 Cep170Q6A065 1588 aa10.17□□□□□ -0.78
Ccdc54-201ENSMUST00000062439 Adamts12Q811B3 1600 aa10.16□□□□□ -0.78
Ccdc54-201ENSMUST00000062439 Mmrn2A6H6E2 943 aa10.16□□□□□ -0.78
Ccdc54-201ENSMUST00000062439 Stxbp5lQ5DQR4 1185 aa10.16□□□□□ -0.78
Ccdc54-201ENSMUST00000062439 Sash3Q8K352 380 aa10.16□□□□□ -0.78
Ccdc54-201ENSMUST00000062439 Mroh2bQ7M6Y6 1581 aa10.16□□□□□ -0.78
Ccdc54-201ENSMUST00000062439 Tarbp2P97473 365 aa10.15□□□□□ -0.78
Ccdc54-201ENSMUST00000062439 PrlrQ08501 608 aa10.15□□□□□ -0.78
Ccdc54-201ENSMUST00000062439 Tmem169Q8BG50 297 aa10.15□□□□□ -0.78
Ccdc54-201ENSMUST00000062439 Slc25a19Q9DAM5 318 aa10.15□□□□□ -0.78
Ccdc54-201ENSMUST00000062439 Abcc1O35379 1528 aa10.14□□□□□ -0.79
Ccdc54-201ENSMUST00000062439 AV320801A2AWL3 467 aa10.14□□□□□ -0.79
Ccdc54-201ENSMUST00000062439 Usp17lbE9Q9U0 468 aa10.14□□□□□ -0.79
Ccdc54-201ENSMUST00000062439 Gm15023L7MUB4 467 aa10.14□□□□□ -0.79
Ccdc54-201ENSMUST00000062439 Adh5P28474 374 aa10.14□□□□□ -0.79
Ccdc54-201ENSMUST00000062439 Ccdc27Q3V036 639 aa10.14□□□□□ -0.79
Ccdc54-201ENSMUST00000062439 ScapQ6GQT6 1276 aa10.14□□□□□ -0.79
Ccdc54-201ENSMUST00000062439 Adam26bQ6IMH6 699 aa10.14□□□□□ -0.79
Ccdc54-201ENSMUST00000062439 ItpkcQ7TS72 678 aa10.14□□□□□ -0.79
Ccdc54-201ENSMUST00000062439 Bud13Q8R149 637 aa10.14□□□□□ -0.79
Ccdc54-201ENSMUST00000062439 Zfp623Q9CY99 499 aa10.14□□□□□ -0.79
Ccdc54-201ENSMUST00000062439 Cabp2Q9JLK4 216 aa10.14□□□□□ -0.79
Ccdc54-201ENSMUST00000062439 Ercc4Q9QZD4 917 aa10.14□□□□□ -0.79
Ccdc54-201ENSMUST00000062439 Gapvd1Q6PAR5 1458 aa10.13□□□□□ -0.79
Ccdc54-201ENSMUST00000062439 Gm21190A0A0G2JGJ6 266 aa10.13□□□□□ -0.79
Ccdc54-201ENSMUST00000062439 Adh6bA0A1D5RMB0 384 aa10.13□□□□□ -0.79
Ccdc54-201ENSMUST00000062439 Cd46O88174 365 aa10.13□□□□□ -0.79
Ccdc54-201ENSMUST00000062439 Wnt11P48615 354 aa10.13□□□□□ -0.79
Retrieved 100 of 22,080 RNA–protein pairs in 18.5 ms