RNA–Protein interactions for RNA: ENST00000641847.1

PHGDH-228, Transcript of phosphoglycerate dehydrogenase, humanhuman

Gene PHGDH, Length 692 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHGDH-228ENST00000641847 PRO2289Q9P1D8 64 aa3.89□□□□□ -1.79
PHGDH-228ENST00000641847 BRK1Q8WUW1 75 aa3.88□□□□□ -1.79
PHGDH-228ENST00000641847 KRTAP8-1Q8IUC2 63 aa3.87□□□□□ -1.79
PHGDH-228ENST00000641847 LCE3BQ5TA77 95 aa3.85□□□□□ -1.79
PHGDH-228ENST00000641847 KRTAP9-9Q9BYP9 154 aa3.85□□□□□ -1.79
PHGDH-228ENST00000641847 KRTAP4-12Q9BQ66 201 aa3.84□□□□□ -1.79
PHGDH-228ENST00000641847 LOC100996750A0A140TA64 210 aa3.83□□□□□ -1.8
PHGDH-228ENST00000641847 KRTAP4-6Q9BYQ5 205 aa3.83□□□□□ -1.8
PHGDH-228ENST00000641847 DSTQ03001 7570 aaKnown RBP3.82□□□□□ -1.8
PHGDH-228ENST00000641847 KTN1-AS1Q86SY8 53 aa3.8□□□□□ -1.8
PHGDH-228ENST00000641847 C10orf95Q9H7T3 257 aa3.78□□□□□ -1.8
PHGDH-228ENST00000641847 KRTAP4-8Q9BYQ9 185 aa3.75□□□□□ -1.81
PHGDH-228ENST00000641847 KRTAP10-7P60409 375 aaPredicted RBP3.74□□□□□ -1.81
PHGDH-228ENST00000641847 TNP1P09430 55 aa3.7□□□□□ -1.82
PHGDH-228ENST00000641847 KRTAP10-12P60413 245 aa3.7□□□□□ -1.82
PHGDH-228ENST00000641847 ROMO1P60602 79 aa3.7□□□□□ -1.82
PHGDH-228ENST00000641847 LCE5AQ5TCM9 118 aa3.69□□□□□ -1.82
PHGDH-228ENST00000641847 KRTAP4-9Q9BYQ8 210 aa3.67□□□□□ -1.82
PHGDH-228ENST00000641847 HMCN1Q96RW7 5635 aa3.66□□□□□ -1.82
PHGDH-228ENST00000641847 AHNAK2Q8IVF2 5795 aa3.66□□□□□ -1.82
PHGDH-228ENST00000641847 KRTAP25-1Q3LHN0 102 aa3.65□□□□□ -1.83
PHGDH-228ENST00000641847 KRTAP4-8A0A0G2JLE6 195 aa3.63□□□□□ -1.83
PHGDH-228ENST00000641847 LCE3AQ5TA76 89 aa3.58□□□□□ -1.84
PHGDH-228ENST00000641847 LCE1DQ5T752 114 aa3.53□□□□□ -1.84
PHGDH-228ENST00000641847 NDUFAF8A1L188 74 aa3.52□□□□□ -1.85
PHGDH-228ENST00000641847 KRTAP19-5Q3LI72 72 aa3.49□□□□□ -1.85
PHGDH-228ENST00000641847 KRTAP5-10Q6L8G5 202 aa3.49□□□□□ -1.85
PHGDH-228ENST00000641847 PP632Q6XCG6 107 aa3.49□□□□□ -1.85
PHGDH-228ENST00000641847 KRTAP19-7Q3SYF9 63 aa3.48□□□□□ -1.85
PHGDH-228ENST00000641847 MT4P47944 62 aa3.46□□□□□ -1.86
PHGDH-228ENST00000641847 MT1EP04732 61 aa3.45□□□□□ -1.86
PHGDH-228ENST00000641847 KRTAP12-3P60328 96 aa3.44□□□□□ -1.86
PHGDH-228ENST00000641847 KRTAP5-7Q6L8G8 165 aa3.43□□□□□ -1.86
PHGDH-228ENST00000641847 SPRR5A0A1B0GTR4 108 aa3.39□□□□□ -1.87
PHGDH-228ENST00000641847 KRTAP19-3Q7Z4W3 81 aa3.36□□□□□ -1.87
PHGDH-228ENST00000641847 MT1LQ93083 61 aa3.35□□□□□ -1.87
PHGDH-228ENST00000641847 KRTAP5-3Q6L8H2 238 aa3.31□□□□□ -1.88
PHGDH-228ENST00000641847 MT1GP13640 62 aa3.28□□□□□ -1.88
PHGDH-228ENST00000641847 MT1MQ8N339 61 aa3.26□□□□□ -1.89
PHGDH-228ENST00000641847 LUZP6Q538Z0 58 aa3.24□□□□□ -1.89
PHGDH-228ENST00000641847 KRTAP5-4Q6L8H1 288 aa3.24□□□□□ -1.89
PHGDH-228ENST00000641847 AHNAKQ09666 5890 aaKnown RBP3.24□□□□□ -1.89
PHGDH-228ENST00000641847 KRTAP4-7Q9BYR0 210 aa3.2□□□□□ -1.9
PHGDH-228ENST00000641847 LCE3CQ5T5A8 94 aa3.19□□□□□ -1.9
PHGDH-228ENST00000641847 KRTAP4-11Q9BYQ6 195 aa3.19□□□□□ -1.9
PHGDH-228ENST00000641847 KRTAP4-3Q9BYR4 195 aa3.18□□□□□ -1.9
PHGDH-228ENST00000641847 MT3P25713 68 aa3.17□□□□□ -1.9
PHGDH-228ENST00000641847 MUC5BQ9HC84 5762 aaPredicted RBP3.11□□□□□ -1.91
PHGDH-228ENST00000641847 KRTAP20-2Q3LI61 65 aa3.11□□□□□ -1.91
PHGDH-228ENST00000641847 MUC5ACP98088 5654 aa3.09□□□□□ -1.91
PHGDH-228ENST00000641847 LCE1FQ5T754 118 aa3.07□□□□□ -1.92
PHGDH-228ENST00000641847 KRTAP12-4P60329 112 aa3.06□□□□□ -1.92
PHGDH-228ENST00000641847 KRTAP4-2Q9BYR5 136 aa3.02□□□□□ -1.93
PHGDH-228ENST00000641847 KRTAP9-6A8MVA2 160 aa3.01□□□□□ -1.93
PHGDH-228ENST00000641847 KRTAP5-5Q701N2 237 aaPredicted RBP2.95□□□□□ -1.94
PHGDH-228ENST00000641847 SYNE1Q8NF91 8797 aaKnown RBP2.92□□□□□ -1.94
PHGDH-228ENST00000641847 KRTAP5-8O75690 187 aa2.87□□□□□ -1.95
PHGDH-228ENST00000641847 MT1AP04731 61 aa2.85□□□□□ -1.95
PHGDH-228ENST00000641847 KRTAP6-1Q3LI64 71 aa2.81□□□□□ -1.96
PHGDH-228ENST00000641847 OBSCNQ5VST9 7968 aa2.8□□□□□ -1.96
PHGDH-228ENST00000641847 KRTAP5-2Q701N4 177 aa2.76□□□□□ -1.97
PHGDH-228ENST00000641847 INE1O15225 51 aa2.63□□□□□ -1.99
PHGDH-228ENST00000641847 KRTAP6-2Q3LI66 62 aa2.63□□□□□ -1.99
PHGDH-228ENST00000641847 LCE3EQ5T5B0 92 aa2.61□□□□□ -1.99
PHGDH-228ENST00000641847 KRTAP5-1Q6L8H4 278 aa2.55□□□□□ -2
PHGDH-228ENST00000641847 LCE1EQ5T753 118 aa2.39□□□□□ -2.03
PHGDH-228ENST00000641847 LCE3DQ9BYE3 92 aa2.36□□□□□ -2.03
PHGDH-228ENST00000641847 LCE1BQ5T7P3 118 aa2.25□□□□□ -2.05
PHGDH-228ENST00000641847 KRTAP5-11Q6L8G4 156 aa2.18□□□□□ -2.06
PHGDH-228ENST00000641847 LCE1CQ5T751 118 aa2.17□□□□□ -2.06
PHGDH-228ENST00000641847 PHGR1C9JFL3 82 aa2.09□□□□□ -2.07
PHGDH-228ENST00000641847 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.97□□□□□ -2.09
PHGDH-228ENST00000641847 PRM1P04553 51 aa1.93□□□□□ -2.1
PHGDH-228ENST00000641847 KRTAP21-2Q3LI59 83 aa1.84□□□□□ -2.11
PHGDH-228ENST00000641847 MUC19Q7Z5P9 8384 aa1.74□□□□□ -2.13
PHGDH-228ENST00000641847 KRTAP4-4Q9BYR3 166 aa1.66□□□□□ -2.14
PHGDH-228ENST00000641847 KRTAP21-1Q3LI58 79 aa1.62□□□□□ -2.15
PHGDH-228ENST00000641847 MUC16Q8WXI7 14507 aa1.15□□□□□ -2.22
Retrieved 78 of 20,778 RNA–protein pairs in 44.2 ms