RNA–Protein interactions for RNA: ENST00000637823.1

CLN6-223, Transcript of CLN6, transmembrane ER protein, human

TSL 5

Gene CLN6, Length 717 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLN6-223	ENST00000637823	KRTAP8-1	Q8IUC2	63 aa		4.48	□□□□□ -1.69
CLN6-223	ENST00000637823	LCE4A	Q5TA78	99 aa		4.44	□□□□□ -1.7
CLN6-223	ENST00000637823	KRTAP19-5	Q3LI72	72 aa		4.4	□□□□□ -1.71
CLN6-223	ENST00000637823	KRTAP9-4	Q9BYQ2	154 aa		4.4	□□□□□ -1.71
CLN6-223	ENST00000637823	KRTAP12-3	P60328	96 aa		4.39	□□□□□ -1.71
CLN6-223	ENST00000637823	KMT2D	O14686	5537 aa		4.37	□□□□□ -1.71
CLN6-223	ENST00000637823	KRTAP19-7	Q3SYF9	63 aa		4.35	□□□□□ -1.71
CLN6-223	ENST00000637823	KRTAP9-9	Q9BYP9	154 aa		4.32	□□□□□ -1.72
CLN6-223	ENST00000637823	LCE3B	Q5TA77	95 aa		4.3	□□□□□ -1.72
CLN6-223	ENST00000637823	MT1E	P04732	61 aa		4.29	□□□□□ -1.72
CLN6-223	ENST00000637823	MDN1	Q9NU22	5596 aa		4.27	□□□□□ -1.73
CLN6-223	ENST00000637823	GPR98	Q8WXG9	6306 aa		4.27	□□□□□ -1.73
CLN6-223	ENST00000637823	KRTAP5-9	P26371	169 aa		4.27	□□□□□ -1.73
CLN6-223	ENST00000637823	SPRR2F	Q96RM1	72 aa		4.27	□□□□□ -1.73
CLN6-223	ENST00000637823	KRTAP2-3	P0C7H8	128 aa		4.2	□□□□□ -1.74
CLN6-223	ENST00000637823	KRTAP2-4	Q9BYR9	128 aa		4.2	□□□□□ -1.74
CLN6-223	ENST00000637823	MT1L	Q93083	61 aa		4.19	□□□□□ -1.74
CLN6-223	ENST00000637823	KRTAP19-3	Q7Z4W3	81 aa		4.15	□□□□□ -1.75
CLN6-223	ENST00000637823	MT1G	P13640	62 aa		4.13	□□□□□ -1.75
CLN6-223	ENST00000637823	LCE5A	Q5TCM9	118 aa		4.12	□□□□□ -1.75
CLN6-223	ENST00000637823	LCE3C	Q5T5A8	94 aa		4.11	□□□□□ -1.75
CLN6-223	ENST00000637823	LCE1A	Q5T7P2	110 aa		4.1	□□□□□ -1.75
CLN6-223	ENST00000637823	SPRR2E	P22531	72 aa		4.08	□□□□□ -1.76
CLN6-223	ENST00000637823	SPRR2B	P35325	72 aa		4.08	□□□□□ -1.76
CLN6-223	ENST00000637823	SPRR2A	P35326	72 aa		4.08	□□□□□ -1.76
CLN6-223	ENST00000637823	MT1M	Q8N339	61 aa		4.05	□□□□□ -1.76
CLN6-223	ENST00000637823	LCE1D	Q5T752	114 aa		4.04	□□□□□ -1.76
CLN6-223	ENST00000637823	KRTAP4-7	Q9BYR0	210 aa		4.02	□□□□□ -1.77
CLN6-223	ENST00000637823	KRTAP2-2	Q9BYT5	123 aa		4.02	□□□□□ -1.77
CLN6-223	ENST00000637823	KRTAP2-1	Q9BYU5	128 aa		4.02	□□□□□ -1.77
CLN6-223	ENST00000637823	SPRR5	A0A1B0GTR4	108 aa		4.01	□□□□□ -1.77
CLN6-223	ENST00000637823	SPRR2D	P22532	72 aa		3.94	□□□□□ -1.78
CLN6-223	ENST00000637823	KRTAP4-3	Q9BYR4	195 aa		3.94	□□□□□ -1.78
CLN6-223	ENST00000637823	NDUFAF8	A1L188	74 aa		3.9	□□□□□ -1.79
CLN6-223	ENST00000637823	KRTAP9-6	A8MVA2	160 aa		3.85	□□□□□ -1.79
CLN6-223	ENST00000637823	LUZP6	Q538Z0	58 aa		3.84	□□□□□ -1.79
CLN6-223	ENST00000637823	KRTAP4-9	Q9BYQ8	210 aa		3.84	□□□□□ -1.79
CLN6-223	ENST00000637823	KRTAP4-11	Q9BYQ6	195 aa		3.78	□□□□□ -1.8
CLN6-223	ENST00000637823	MT3	P25713	68 aa		3.75	□□□□□ -1.81
CLN6-223	ENST00000637823	DST	Q03001	7570 aa	Known RBP	3.72	□□□□□ -1.81
CLN6-223	ENST00000637823	AHNAK2	Q8IVF2	5795 aa		3.67	□□□□□ -1.82
CLN6-223	ENST00000637823	KRTAP5-5	Q701N2	237 aa	Predicted RBP	3.66	□□□□□ -1.82
CLN6-223	ENST00000637823	HMCN1	Q96RW7	5635 aa		3.66	□□□□□ -1.82
CLN6-223	ENST00000637823	KRTAP5-10	Q6L8G5	202 aa		3.63	□□□□□ -1.83
CLN6-223	ENST00000637823	KRTAP4-2	Q9BYR5	136 aa		3.59	□□□□□ -1.83
CLN6-223	ENST00000637823	MT1A	P04731	61 aa		3.58	□□□□□ -1.84
CLN6-223	ENST00000637823	KRTAP5-7	Q6L8G8	165 aa		3.56	□□□□□ -1.84
CLN6-223	ENST00000637823	KRTAP5-4	Q6L8H1	288 aa		3.55	□□□□□ -1.84
CLN6-223	ENST00000637823	KRTAP6-1	Q3LI64	71 aa		3.53	□□□□□ -1.84
CLN6-223	ENST00000637823	KRTAP12-4	P60329	112 aa		3.45	□□□□□ -1.86
CLN6-223	ENST00000637823	MT4	P47944	62 aa		3.4	□□□□□ -1.87
CLN6-223	ENST00000637823	KRTAP5-3	Q6L8H2	238 aa		3.35	□□□□□ -1.87
CLN6-223	ENST00000637823	SYNE1	Q8NF91	8797 aa	Known RBP	3.33	□□□□□ -1.88
CLN6-223	ENST00000637823	KRTAP20-2	Q3LI61	65 aa		3.31	□□□□□ -1.88
CLN6-223	ENST00000637823	LCE1F	Q5T754	118 aa		3.31	□□□□□ -1.88
CLN6-223	ENST00000637823	KRTAP6-2	Q3LI66	62 aa		3.27	□□□□□ -1.89
CLN6-223	ENST00000637823	AHNAK	Q09666	5890 aa	Known RBP	3.23	□□□□□ -1.89
CLN6-223	ENST00000637823	KRTAP5-2	Q701N4	177 aa		3.2	□□□□□ -1.9
CLN6-223	ENST00000637823	MUC5AC	P98088	5654 aa		3.15	□□□□□ -1.9
CLN6-223	ENST00000637823	MUC5B	Q9HC84	5762 aa	Predicted RBP	3.12	□□□□□ -1.91
CLN6-223	ENST00000637823	LCE3D	Q9BYE3	92 aa		3.07	□□□□□ -1.92
CLN6-223	ENST00000637823	INE1	O15225	51 aa		3.05	□□□□□ -1.92
CLN6-223	ENST00000637823	LCE3E	Q5T5B0	92 aa		2.98	□□□□□ -1.93
CLN6-223	ENST00000637823	KRTAP5-8	O75690	187 aa		2.88	□□□□□ -1.95
CLN6-223	ENST00000637823	LCE1E	Q5T753	118 aa		2.86	□□□□□ -1.95
CLN6-223	ENST00000637823	OBSCN	Q5VST9	7968 aa		2.83	□□□□□ -1.96
CLN6-223	ENST00000637823	KRTAP5-1	Q6L8H4	278 aa		2.77	□□□□□ -1.97
CLN6-223	ENST00000637823	LCE1C	Q5T751	118 aa		2.66	□□□□□ -1.98
CLN6-223	ENST00000637823	LCE1B	Q5T7P3	118 aa		2.66	□□□□□ -1.98
CLN6-223	ENST00000637823	PRM1	P04553	51 aa		2.53	□□□□□ -2
CLN6-223	ENST00000637823	KRTAP5-11	Q6L8G4	156 aa		2.52	□□□□□ -2.01
CLN6-223	ENST00000637823	KRTAP5-6	Q6L8G9	129 aa	Predicted RBP	2.48	□□□□□ -2.01
CLN6-223	ENST00000637823	KRTAP21-2	Q3LI59	83 aa		2.32	□□□□□ -2.04
CLN6-223	ENST00000637823	PHGR1	C9JFL3	82 aa		2.1	□□□□□ -2.07
CLN6-223	ENST00000637823	KRTAP4-4	Q9BYR3	166 aa		2.05	□□□□□ -2.08
CLN6-223	ENST00000637823	MUC19	Q7Z5P9	8384 aa		1.72	□□□□□ -2.13
CLN6-223	ENST00000637823	KRTAP21-1	Q3LI58	79 aa		1.58	□□□□□ -2.16
CLN6-223	ENST00000637823	MUC16	Q8WXI7	14507 aa		1.31	□□□□□ -2.2

Retrieved 78 of 20,778 RNA–protein pairs in 10.9 ms