RNA–Protein interactions for RNA: ENST00000637686.1

CLN3-261, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 533 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-261ENST00000637686 PP632Q6XCG6 107 aa3.77□□□□□ -1.81
CLN3-261ENST00000637686 KRTAP2-3P0C7H8 128 aa3.74□□□□□ -1.81
CLN3-261ENST00000637686 KRTAP2-4Q9BYR9 128 aa3.74□□□□□ -1.81
CLN3-261ENST00000637686 KTN1-AS1Q86SY8 53 aa3.73□□□□□ -1.81
CLN3-261ENST00000637686 LCE3AQ5TA76 89 aa3.7□□□□□ -1.82
CLN3-261ENST00000637686 SPRR2DP22532 72 aa3.69□□□□□ -1.82
CLN3-261ENST00000637686 KRTAP19-7Q3SYF9 63 aa3.69□□□□□ -1.82
CLN3-261ENST00000637686 MT1EP04732 61 aa3.65□□□□□ -1.83
CLN3-261ENST00000637686 KRTAP19-5Q3LI72 72 aa3.64□□□□□ -1.83
CLN3-261ENST00000637686 KRTAP19-3Q7Z4W3 81 aa3.6□□□□□ -1.83
CLN3-261ENST00000637686 PRAC1Q96KF2 57 aa3.6□□□□□ -1.83
CLN3-261ENST00000637686 KRTAP12-3P60328 96 aa3.59□□□□□ -1.83
CLN3-261ENST00000637686 KRTAP2-2Q9BYT5 123 aa3.59□□□□□ -1.83
CLN3-261ENST00000637686 KRTAP2-1Q9BYU5 128 aa3.59□□□□□ -1.83
CLN3-261ENST00000637686 LCE3BQ5TA77 95 aa3.58□□□□□ -1.84
CLN3-261ENST00000637686 LCE5AQ5TCM9 118 aa3.58□□□□□ -1.84
CLN3-261ENST00000637686 KRTAP19-4Q3LI73 84 aa3.55□□□□□ -1.84
CLN3-261ENST00000637686 MT1GP13640 62 aa3.52□□□□□ -1.85
CLN3-261ENST00000637686 MT1LQ93083 61 aa3.51□□□□□ -1.85
CLN3-261ENST00000637686 A0A0A0MQY5 61 aa3.5□□□□□ -1.85
CLN3-261ENST00000637686 KRTAP15-1Q3LI76 137 aa3.49□□□□□ -1.85
CLN3-261ENST00000637686 MT1MQ8N339 61 aa3.47□□□□□ -1.85
CLN3-261ENST00000637686 KRTAP4-3Q9BYR4 195 aa3.4□□□□□ -1.87
CLN3-261ENST00000637686 DSTQ03001 7570 aaKnown RBP3.4□□□□□ -1.87
CLN3-261ENST00000637686 KRTAP4-7Q9BYR0 210 aa3.37□□□□□ -1.87
CLN3-261ENST00000637686 LCE3CQ5T5A8 94 aa3.34□□□□□ -1.87
CLN3-261ENST00000637686 KRTAP4-9Q9BYQ8 210 aa3.31□□□□□ -1.88
CLN3-261ENST00000637686 AHNAK2Q8IVF2 5795 aa3.31□□□□□ -1.88
CLN3-261ENST00000637686 SPRR5A0A1B0GTR4 108 aa3.26□□□□□ -1.89
CLN3-261ENST00000637686 LCE4AQ5TA78 99 aa3.26□□□□□ -1.89
CLN3-261ENST00000637686 LCE1DQ5T752 114 aa3.24□□□□□ -1.89
CLN3-261ENST00000637686 KRTAP5-10Q6L8G5 202 aa3.24□□□□□ -1.89
CLN3-261ENST00000637686 MT4P47944 62 aa3.23□□□□□ -1.89
CLN3-261ENST00000637686 KRTAP5-4Q6L8H1 288 aa3.22□□□□□ -1.89
CLN3-261ENST00000637686 KRTAP5-7Q6L8G8 165 aa3.21□□□□□ -1.9
CLN3-261ENST00000637686 LOC100996750A0A140TA64 210 aa3.18□□□□□ -1.9
CLN3-261ENST00000637686 KRTAP5-5Q701N2 237 aaPredicted RBP3.17□□□□□ -1.9
CLN3-261ENST00000637686 HMCN1Q96RW7 5635 aa3.16□□□□□ -1.9
CLN3-261ENST00000637686 KRTAP4-6Q9BYQ5 205 aa3.15□□□□□ -1.91
CLN3-261ENST00000637686 KRTAP9-6A8MVA2 160 aa3.11□□□□□ -1.91
CLN3-261ENST00000637686 KRTAP12-4P60329 112 aa3.05□□□□□ -1.92
CLN3-261ENST00000637686 LUZP6Q538Z0 58 aa3.05□□□□□ -1.92
CLN3-261ENST00000637686 KRTAP20-2Q3LI61 65 aa3.04□□□□□ -1.92
CLN3-261ENST00000637686 MT1AP04731 61 aa2.98□□□□□ -1.93
CLN3-261ENST00000637686 AHNAKQ09666 5890 aaKnown RBP2.98□□□□□ -1.93
CLN3-261ENST00000637686 KRTAP6-1Q3LI64 71 aa2.97□□□□□ -1.93
CLN3-261ENST00000637686 SYNE1Q8NF91 8797 aaKnown RBP2.97□□□□□ -1.93
CLN3-261ENST00000637686 KRTAP5-3Q6L8H2 238 aa2.96□□□□□ -1.94
CLN3-261ENST00000637686 KRTAP4-12Q9BQ66 201 aa2.91□□□□□ -1.94
CLN3-261ENST00000637686 KRTAP9-4Q9BYQ2 154 aa2.91□□□□□ -1.94
CLN3-261ENST00000637686 KRTAP9-9Q9BYP9 154 aa2.89□□□□□ -1.95
CLN3-261ENST00000637686 MUC5BQ9HC84 5762 aaPredicted RBP2.87□□□□□ -1.95
CLN3-261ENST00000637686 KRTAP5-2Q701N4 177 aa2.84□□□□□ -1.95
CLN3-261ENST00000637686 MUC5ACP98088 5654 aa2.83□□□□□ -1.96
CLN3-261ENST00000637686 NDUFAF8A1L188 74 aa2.81□□□□□ -1.96
CLN3-261ENST00000637686 KRTAP6-2Q3LI66 62 aa2.81□□□□□ -1.96
CLN3-261ENST00000637686 KRTAP4-11Q9BYQ6 195 aa2.75□□□□□ -1.97
CLN3-261ENST00000637686 MT3P25713 68 aa2.73□□□□□ -1.97
CLN3-261ENST00000637686 KRTAP5-8O75690 187 aa2.65□□□□□ -1.99
CLN3-261ENST00000637686 OBSCNQ5VST9 7968 aa2.56□□□□□ -2
CLN3-261ENST00000637686 KRTAP5-1Q6L8H4 278 aa2.54□□□□□ -2
CLN3-261ENST00000637686 LCE3DQ9BYE3 92 aa2.49□□□□□ -2.01
CLN3-261ENST00000637686 LCE1EQ5T753 118 aa2.46□□□□□ -2.02
CLN3-261ENST00000637686 INE1O15225 51 aa2.42□□□□□ -2.02
CLN3-261ENST00000637686 LCE3EQ5T5B0 92 aa2.41□□□□□ -2.02
CLN3-261ENST00000637686 LCE1BQ5T7P3 118 aa2.34□□□□□ -2.03
CLN3-261ENST00000637686 KRTAP4-2Q9BYR5 136 aa2.33□□□□□ -2.04
CLN3-261ENST00000637686 LCE1CQ5T751 118 aa2.29□□□□□ -2.04
CLN3-261ENST00000637686 LCE1FQ5T754 118 aa2.25□□□□□ -2.05
CLN3-261ENST00000637686 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.12□□□□□ -2.07
CLN3-261ENST00000637686 KRTAP5-11Q6L8G4 156 aa2.06□□□□□ -2.08
CLN3-261ENST00000637686 PRM1P04553 51 aa2□□□□□ -2.09
CLN3-261ENST00000637686 PHGR1C9JFL3 82 aa1.94□□□□□ -2.1
CLN3-261ENST00000637686 KRTAP21-2Q3LI59 83 aa1.94□□□□□ -2.1
CLN3-261ENST00000637686 KRTAP4-4Q9BYR3 166 aa1.79□□□□□ -2.12
CLN3-261ENST00000637686 MUC19Q7Z5P9 8384 aa1.56□□□□□ -2.16
CLN3-261ENST00000637686 KRTAP21-1Q3LI58 79 aa1.47□□□□□ -2.17
CLN3-261ENST00000637686 MUC16Q8WXI7 14507 aa1.18□□□□□ -2.22
Retrieved 78 of 20,778 RNA–protein pairs in 62.2 ms