RNA–Protein interactions for RNA: ENST00000637100.1

CLN3-255, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,284 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-255ENST00000637100 ATP5EP56381 51 aaPredicted RBP5.66□□□□□ -1.5
CLN3-255ENST00000637100 COA5Q86WW8 74 aa5.66□□□□□ -1.5
CLN3-255ENST00000637100 SERP1Q9Y6X1 66 aa5.66□□□□□ -1.5
CLN3-255ENST00000637100 SPATA8Q6RVD6 105 aa5.64□□□□□ -1.51
CLN3-255ENST00000637100 SPRR5A0A1B0GTR4 108 aa5.63□□□□□ -1.51
CLN3-255ENST00000637100 SPINT4Q6UDR6 99 aa5.63□□□□□ -1.51
CLN3-255ENST00000637100 SMIM26A0A096LP01 95 aa5.62□□□□□ -1.51
CLN3-255ENST00000637100 C10orf95Q9H7T3 257 aa5.6□□□□□ -1.51
CLN3-255ENST00000637100 LCE3AQ5TA76 89 aa5.58□□□□□ -1.52
CLN3-255ENST00000637100 A0A1B0GU33 70 aa5.57□□□□□ -1.52
CLN3-255ENST00000637100 KRTAP20-2Q3LI61 65 aa5.53□□□□□ -1.52
CLN3-255ENST00000637100 KRTAP5-5Q701N2 237 aaPredicted RBP5.5□□□□□ -1.53
CLN3-255ENST00000637100 H7BZZ5 65 aa5.48□□□□□ -1.53
CLN3-255ENST00000637100 KRTAP4-7Q9BYR0 210 aa5.48□□□□□ -1.53
CLN3-255ENST00000637100 PMAIP1Q13794 54 aa5.47□□□□□ -1.53
CLN3-255ENST00000637100 TNP1P09430 55 aa5.46□□□□□ -1.54
CLN3-255ENST00000637100 BRK1Q8WUW1 75 aa5.43□□□□□ -1.54
CLN3-255ENST00000637100 A0A1B0GU69 56 aa5.37□□□□□ -1.55
CLN3-255ENST00000637100 KRTAP12-3P60328 96 aa5.37□□□□□ -1.55
CLN3-255ENST00000637100 A8MU10 97 aa5.36□□□□□ -1.55
CLN3-255ENST00000637100 KRTAP12-4P60329 112 aa5.35□□□□□ -1.55
CLN3-255ENST00000637100 Q1T7F1 81 aa5.35□□□□□ -1.55
CLN3-255ENST00000637100 KTN1-AS1Q86SY8 53 aa5.3□□□□□ -1.56
CLN3-255ENST00000637100 AHNAKQ09666 5890 aaKnown RBP5.23□□□□□ -1.57
CLN3-255ENST00000637100 SYNE1Q8NF91 8797 aaKnown RBP5.22□□□□□ -1.57
CLN3-255ENST00000637100 LOC100996750A0A140TA64 210 aa5.2□□□□□ -1.58
CLN3-255ENST00000637100 KRTAP19-4Q3LI73 84 aa5.18□□□□□ -1.58
CLN3-255ENST00000637100 PRR15LQ9BU68 103 aa5.18□□□□□ -1.58
CLN3-255ENST00000637100 MUC5ACP98088 5654 aa5.14□□□□□ -1.59
CLN3-255ENST00000637100 MUC5BQ9HC84 5762 aaPredicted RBP5.14□□□□□ -1.59
CLN3-255ENST00000637100 KRTAP4-11Q9BYQ6 195 aa5.13□□□□□ -1.59
CLN3-255ENST00000637100 LINC01558Q9Y6Z2 57 aa5.11□□□□□ -1.59
CLN3-255ENST00000637100 KRTAP5-2Q701N4 177 aa5.1□□□□□ -1.59
CLN3-255ENST00000637100 CDC42SE1Q9NRR8 79 aa5.06□□□□□ -1.6
CLN3-255ENST00000637100 KRTAP25-1Q3LHN0 102 aa5.01□□□□□ -1.61
CLN3-255ENST00000637100 UQCR11O14957 56 aa5□□□□□ -1.61
CLN3-255ENST00000637100 PSPHP1O15172 72 aa5□□□□□ -1.61
CLN3-255ENST00000637100 KRTAP5-8O75690 187 aa5□□□□□ -1.61
CLN3-255ENST00000637100 H3BS24 57 aa4.98□□□□□ -1.61
CLN3-255ENST00000637100 MT1AP04731 61 aa4.95□□□□□ -1.62
CLN3-255ENST00000637100 A6NED7 52 aa4.93□□□□□ -1.62
CLN3-255ENST00000637100 KRTAP6-1Q3LI64 71 aa4.93□□□□□ -1.62
CLN3-255ENST00000637100 LCE3CQ5T5A8 94 aa4.93□□□□□ -1.62
CLN3-255ENST00000637100 MIR22HGQ0VDD5 57 aa4.91□□□□□ -1.62
CLN3-255ENST00000637100 KRTAP15-1Q3LI76 137 aa4.91□□□□□ -1.62
CLN3-255ENST00000637100 KRTAP23-1A1A580 65 aa4.89□□□□□ -1.63
CLN3-255ENST00000637100 KRTAP9-4Q9BYQ2 154 aa4.83□□□□□ -1.64
CLN3-255ENST00000637100 K7ERS5 55 aa4.81□□□□□ -1.64
CLN3-255ENST00000637100 KRTAP9-9Q9BYP9 154 aa4.78□□□□□ -1.64
CLN3-255ENST00000637100 OBSCNQ5VST9 7968 aa4.78□□□□□ -1.64
CLN3-255ENST00000637100 KRTAP6-2Q3LI66 62 aa4.76□□□□□ -1.65
CLN3-255ENST00000637100 KRTAP9-6A8MVA2 160 aa4.7□□□□□ -1.66
CLN3-255ENST00000637100 KRTAP5-1Q6L8H4 278 aa4.64□□□□□ -1.67
CLN3-255ENST00000637100 PRAC1Q96KF2 57 aa4.63□□□□□ -1.67
CLN3-255ENST00000637100 ROMO1P60602 79 aa4.59□□□□□ -1.67
CLN3-255ENST00000637100 MT3P25713 68 aa4.54□□□□□ -1.68
CLN3-255ENST00000637100 A0A0A0MQY5 61 aa4.43□□□□□ -1.7
CLN3-255ENST00000637100 LCE1EQ5T753 118 aa4.32□□□□□ -1.72
CLN3-255ENST00000637100 NDUFAF8A1L188 74 aa4.15□□□□□ -1.75
CLN3-255ENST00000637100 LUZP6Q538Z0 58 aa4.15□□□□□ -1.75
CLN3-255ENST00000637100 KRTAP4-2Q9BYR5 136 aa4.1□□□□□ -1.75
CLN3-255ENST00000637100 LCE1CQ5T751 118 aa4□□□□□ -1.77
CLN3-255ENST00000637100 LCE1BQ5T7P3 118 aa4□□□□□ -1.77
CLN3-255ENST00000637100 KRTAP4-12Q9BQ66 201 aa3.8□□□□□ -1.8
CLN3-255ENST00000637100 KRTAP5-11Q6L8G4 156 aa3.69□□□□□ -1.82
CLN3-255ENST00000637100 INE1O15225 51 aa3.67□□□□□ -1.82
CLN3-255ENST00000637100 LCE1FQ5T754 118 aa3.65□□□□□ -1.83
CLN3-255ENST00000637100 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.63□□□□□ -1.83
CLN3-255ENST00000637100 PHGR1C9JFL3 82 aa3.52□□□□□ -1.85
CLN3-255ENST00000637100 LCE3DQ9BYE3 92 aa3.46□□□□□ -1.86
CLN3-255ENST00000637100 KRTAP21-2Q3LI59 83 aa3.3□□□□□ -1.88
CLN3-255ENST00000637100 LCE3EQ5T5B0 92 aa3.2□□□□□ -1.9
CLN3-255ENST00000637100 MUC19Q7Z5P9 8384 aa3.02□□□□□ -1.93
CLN3-255ENST00000637100 KRTAP4-4Q9BYR3 166 aa2.97□□□□□ -1.93
CLN3-255ENST00000637100 KRTAP21-1Q3LI58 79 aa2.66□□□□□ -1.98
CLN3-255ENST00000637100 PRM1P04553 51 aa2.31□□□□□ -2.04
CLN3-255ENST00000637100 MUC16Q8WXI7 14507 aa2.1□□□□□ -2.07
Retrieved 77 of 20,778 RNA–protein pairs in 97.4 ms