RNA–Protein interactions for RNA: ENST00000636685.1

CLN3-249, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 801 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-249ENST00000636685 SPRR5A0A1B0GTR4 108 aa5.52□□□□□ -1.53
CLN3-249ENST00000636685 KRTAP19-3Q7Z4W3 81 aa5.52□□□□□ -1.53
CLN3-249ENST00000636685 KTN1-AS1Q86SY8 53 aa5.52□□□□□ -1.53
CLN3-249ENST00000636685 M0QZ58 72 aa5.49□□□□□ -1.53
CLN3-249ENST00000636685 LINC01554Q52M75 96 aa5.48□□□□□ -1.53
CLN3-249ENST00000636685 KRTAP5-3Q6L8H2 238 aa5.48□□□□□ -1.53
CLN3-249ENST00000636685 KRTAP4-6Q9BYQ5 205 aa5.47□□□□□ -1.53
CLN3-249ENST00000636685 K7ERS5 55 aa5.45□□□□□ -1.54
CLN3-249ENST00000636685 P0C880 135 aa5.45□□□□□ -1.54
CLN3-249ENST00000636685 KRTAP19-7Q3SYF9 63 aa5.45□□□□□ -1.54
CLN3-249ENST00000636685 KRTAP3-2Q9BYR7 98 aa5.45□□□□□ -1.54
CLN3-249ENST00000636685 MT1EP04732 61 aa5.44□□□□□ -1.54
CLN3-249ENST00000636685 KRTAP5-4Q6L8H1 288 aa5.38□□□□□ -1.55
CLN3-249ENST00000636685 KRTAP13-4Q3LI77 160 aa5.31□□□□□ -1.56
CLN3-249ENST00000636685 MT1GP13640 62 aa5.3□□□□□ -1.56
CLN3-249ENST00000636685 A0A0D9SG42 100 aa5.27□□□□□ -1.57
CLN3-249ENST00000636685 PP632Q6XCG6 107 aa5.24□□□□□ -1.57
CLN3-249ENST00000636685 MT1MQ8N339 61 aa5.23□□□□□ -1.57
CLN3-249ENST00000636685 PRAC1Q96KF2 57 aa5.22□□□□□ -1.57
CLN3-249ENST00000636685 ROMO1P60602 79 aa5.21□□□□□ -1.58
CLN3-249ENST00000636685 KRTAP4-3Q9BYR4 195 aa5.19□□□□□ -1.58
CLN3-249ENST00000636685 KRTAP12-1P59990 96 aa5.17□□□□□ -1.58
CLN3-249ENST00000636685 SPINT4Q6UDR6 99 aa5.16□□□□□ -1.58
CLN3-249ENST00000636685 KRTAP20-2Q3LI61 65 aa5.15□□□□□ -1.59
CLN3-249ENST00000636685 KRTAP19-5Q3LI72 72 aa5.14□□□□□ -1.59
CLN3-249ENST00000636685 KRTAP25-1Q3LHN0 102 aa5.12□□□□□ -1.59
CLN3-249ENST00000636685 AHNAKQ09666 5890 aaKnown RBP5.09□□□□□ -1.59
CLN3-249ENST00000636685 MT1LQ93083 61 aa5.08□□□□□ -1.6
CLN3-249ENST00000636685 CAMK2N1Q7Z7J9 78 aa5□□□□□ -1.61
CLN3-249ENST00000636685 MUC5ACP98088 5654 aa4.99□□□□□ -1.61
CLN3-249ENST00000636685 MUC5BQ9HC84 5762 aaPredicted RBP4.96□□□□□ -1.61
CLN3-249ENST00000636685 KRTAP12-4P60329 112 aa4.89□□□□□ -1.63
CLN3-249ENST00000636685 C10orf95Q9H7T3 257 aa4.88□□□□□ -1.63
CLN3-249ENST00000636685 KRTAP4-11Q9BYQ6 195 aa4.87□□□□□ -1.63
CLN3-249ENST00000636685 KRTAP5-5Q701N2 237 aaPredicted RBP4.86□□□□□ -1.63
CLN3-249ENST00000636685 KRTAP4-7Q9BYR0 210 aa4.84□□□□□ -1.63
CLN3-249ENST00000636685 SYNE1Q8NF91 8797 aaKnown RBP4.84□□□□□ -1.63
CLN3-249ENST00000636685 KRTAP5-8O75690 187 aa4.78□□□□□ -1.64
CLN3-249ENST00000636685 TNP1P09430 55 aa4.74□□□□□ -1.65
CLN3-249ENST00000636685 KRTAP23-1A1A580 65 aa4.73□□□□□ -1.65
CLN3-249ENST00000636685 LCE3AQ5TA76 89 aa4.66□□□□□ -1.66
CLN3-249ENST00000636685 LOC100996750A0A140TA64 210 aa4.62□□□□□ -1.67
CLN3-249ENST00000636685 KRTAP5-2Q701N4 177 aa4.6□□□□□ -1.67
CLN3-249ENST00000636685 KRTAP9-9Q9BYP9 154 aa4.6□□□□□ -1.67
CLN3-249ENST00000636685 KRTAP15-1Q3LI76 137 aa4.58□□□□□ -1.68
CLN3-249ENST00000636685 OBSCNQ5VST9 7968 aa4.47□□□□□ -1.69
CLN3-249ENST00000636685 KRTAP12-3P60328 96 aa4.45□□□□□ -1.7
CLN3-249ENST00000636685 KRTAP6-1Q3LI64 71 aa4.35□□□□□ -1.71
CLN3-249ENST00000636685 LUZP6Q538Z0 58 aa4.33□□□□□ -1.72
CLN3-249ENST00000636685 NDUFAF8A1L188 74 aa4.32□□□□□ -1.72
CLN3-249ENST00000636685 MT1AP04731 61 aa4.3□□□□□ -1.72
CLN3-249ENST00000636685 KRTAP6-2Q3LI66 62 aa4.29□□□□□ -1.72
CLN3-249ENST00000636685 KRTAP5-1Q6L8H4 278 aa4.26□□□□□ -1.73
CLN3-249ENST00000636685 KRTAP9-4Q9BYQ2 154 aa4.25□□□□□ -1.73
CLN3-249ENST00000636685 H3BS24 57 aa4.21□□□□□ -1.74
CLN3-249ENST00000636685 KRTAP19-4Q3LI73 84 aa4.12□□□□□ -1.75
CLN3-249ENST00000636685 LCE3CQ5T5A8 94 aa4.03□□□□□ -1.76
CLN3-249ENST00000636685 A0A0A0MQY5 61 aa3.96□□□□□ -1.78
CLN3-249ENST00000636685 MT3P25713 68 aa3.95□□□□□ -1.78
CLN3-249ENST00000636685 KRTAP9-6A8MVA2 160 aa3.87□□□□□ -1.79
CLN3-249ENST00000636685 LCE1EQ5T753 118 aa3.78□□□□□ -1.8
CLN3-249ENST00000636685 KRTAP4-2Q9BYR5 136 aa3.69□□□□□ -1.82
CLN3-249ENST00000636685 LCE1BQ5T7P3 118 aa3.68□□□□□ -1.82
CLN3-249ENST00000636685 INE1O15225 51 aa3.67□□□□□ -1.82
CLN3-249ENST00000636685 KRTAP4-12Q9BQ66 201 aa3.65□□□□□ -1.83
CLN3-249ENST00000636685 LCE1CQ5T751 118 aa3.51□□□□□ -1.85
CLN3-249ENST00000636685 KRTAP5-11Q6L8G4 156 aa3.42□□□□□ -1.86
CLN3-249ENST00000636685 PHGR1C9JFL3 82 aa3.41□□□□□ -1.86
CLN3-249ENST00000636685 LCE1FQ5T754 118 aa3.31□□□□□ -1.88
CLN3-249ENST00000636685 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.1□□□□□ -1.91
CLN3-249ENST00000636685 LCE3DQ9BYE3 92 aa3.07□□□□□ -1.92
CLN3-249ENST00000636685 LCE3EQ5T5B0 92 aa3.02□□□□□ -1.93
CLN3-249ENST00000636685 KRTAP21-2Q3LI59 83 aa2.86□□□□□ -1.95
CLN3-249ENST00000636685 MUC19Q7Z5P9 8384 aa2.83□□□□□ -1.96
CLN3-249ENST00000636685 KRTAP4-4Q9BYR3 166 aa2.78□□□□□ -1.96
CLN3-249ENST00000636685 PRM1P04553 51 aa2.7□□□□□ -1.98
CLN3-249ENST00000636685 KRTAP21-1Q3LI58 79 aa2.57□□□□□ -2
CLN3-249ENST00000636685 MUC16Q8WXI7 14507 aa1.93□□□□□ -2.1
Retrieved 78 of 20,778 RNA–protein pairs in 109.5 ms