RNA–Protein interactions for RNA: ENST00000636228.1

CLN3-246, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,224 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-246ENST00000636228 SPINT4Q6UDR6 99 aa5.82□□□□□ -1.48
CLN3-246ENST00000636228 A8MU10 97 aa5.81□□□□□ -1.48
CLN3-246ENST00000636228 KRTAP12-1P59990 96 aa5.79□□□□□ -1.48
CLN3-246ENST00000636228 LCE4AQ5TA78 99 aa5.76□□□□□ -1.49
CLN3-246ENST00000636228 PP632Q6XCG6 107 aa5.76□□□□□ -1.49
CLN3-246ENST00000636228 MT1MQ8N339 61 aa5.76□□□□□ -1.49
CLN3-246ENST00000636228 MIR22HGQ0VDD5 57 aa5.74□□□□□ -1.49
CLN3-246ENST00000636228 MT1LQ93083 61 aa5.73□□□□□ -1.49
CLN3-246ENST00000636228 KRTAP4-3Q9BYR4 195 aa5.72□□□□□ -1.49
CLN3-246ENST00000636228 AHNAK2Q8IVF2 5795 aa5.7□□□□□ -1.5
CLN3-246ENST00000636228 A6NED7 52 aa5.68□□□□□ -1.5
CLN3-246ENST00000636228 KRTAP4-6Q9BYQ5 205 aa5.63□□□□□ -1.51
CLN3-246ENST00000636228 KRTAP5-4Q6L8H1 288 aa5.62□□□□□ -1.51
CLN3-246ENST00000636228 C10orf95Q9H7T3 257 aa5.62□□□□□ -1.51
CLN3-246ENST00000636228 LCE3AQ5TA76 89 aa5.61□□□□□ -1.51
CLN3-246ENST00000636228 KRTAP5-10Q6L8G5 202 aa5.58□□□□□ -1.52
CLN3-246ENST00000636228 CDC42SE1Q9NRR8 79 aa5.54□□□□□ -1.52
CLN3-246ENST00000636228 K7ERS5 55 aa5.52□□□□□ -1.53
CLN3-246ENST00000636228 KRTAP4-7Q9BYR0 210 aa5.51□□□□□ -1.53
CLN3-246ENST00000636228 TNP1P09430 55 aa5.5□□□□□ -1.53
CLN3-246ENST00000636228 KRTAP5-3Q6L8H2 238 aa5.4□□□□□ -1.54
CLN3-246ENST00000636228 KRTAP5-7Q6L8G8 165 aa5.38□□□□□ -1.55
CLN3-246ENST00000636228 KRTAP12-3P60328 96 aa5.36□□□□□ -1.55
CLN3-246ENST00000636228 KRTAP20-2Q3LI61 65 aa5.35□□□□□ -1.55
CLN3-246ENST00000636228 BRK1Q8WUW1 75 aa5.33□□□□□ -1.56
CLN3-246ENST00000636228 KRTAP5-5Q701N2 237 aaPredicted RBP5.29□□□□□ -1.56
CLN3-246ENST00000636228 KRTAP25-1Q3LHN0 102 aa5.28□□□□□ -1.56
CLN3-246ENST00000636228 ROMO1P60602 79 aa5.26□□□□□ -1.57
CLN3-246ENST00000636228 SPRR5A0A1B0GTR4 108 aa5.24□□□□□ -1.57
CLN3-246ENST00000636228 LOC100996750A0A140TA64 210 aa5.23□□□□□ -1.57
CLN3-246ENST00000636228 KRTAP12-4P60329 112 aa5.21□□□□□ -1.58
CLN3-246ENST00000636228 SYNE1Q8NF91 8797 aaKnown RBP5.17□□□□□ -1.58
CLN3-246ENST00000636228 KRTAP23-1A1A580 65 aa5.13□□□□□ -1.59
CLN3-246ENST00000636228 PMAIP1Q13794 54 aa5.03□□□□□ -1.6
CLN3-246ENST00000636228 PRO0628Q9UI54 55 aa5.03□□□□□ -1.6
CLN3-246ENST00000636228 KRTAP4-11Q9BYQ6 195 aa4.94□□□□□ -1.62
CLN3-246ENST00000636228 KRTAP19-4Q3LI73 84 aa4.92□□□□□ -1.62
CLN3-246ENST00000636228 KRTAP15-1Q3LI76 137 aa4.92□□□□□ -1.62
CLN3-246ENST00000636228 LCE3CQ5T5A8 94 aa4.91□□□□□ -1.62
CLN3-246ENST00000636228 KRTAP6-1Q3LI64 71 aa4.88□□□□□ -1.63
CLN3-246ENST00000636228 KRTAP5-2Q701N4 177 aa4.87□□□□□ -1.63
CLN3-246ENST00000636228 MT1AP04731 61 aa4.84□□□□□ -1.63
CLN3-246ENST00000636228 KRTAP5-8O75690 187 aa4.78□□□□□ -1.64
CLN3-246ENST00000636228 AHNAKQ09666 5890 aaKnown RBP4.78□□□□□ -1.64
CLN3-246ENST00000636228 PRAC1Q96KF2 57 aa4.77□□□□□ -1.65
CLN3-246ENST00000636228 MUC5BQ9HC84 5762 aaPredicted RBP4.75□□□□□ -1.65
CLN3-246ENST00000636228 OBSCNQ5VST9 7968 aa4.73□□□□□ -1.65
CLN3-246ENST00000636228 KRTAP9-4Q9BYQ2 154 aa4.73□□□□□ -1.65
CLN3-246ENST00000636228 MUC5ACP98088 5654 aa4.72□□□□□ -1.65
CLN3-246ENST00000636228 KTN1-AS1Q86SY8 53 aa4.72□□□□□ -1.65
CLN3-246ENST00000636228 KRTAP6-2Q3LI66 62 aa4.71□□□□□ -1.66
CLN3-246ENST00000636228 KRTAP9-6A8MVA2 160 aa4.69□□□□□ -1.66
CLN3-246ENST00000636228 KRTAP9-9Q9BYP9 154 aa4.57□□□□□ -1.68
CLN3-246ENST00000636228 MT3P25713 68 aa4.45□□□□□ -1.7
CLN3-246ENST00000636228 KRTAP5-1Q6L8H4 278 aa4.44□□□□□ -1.7
CLN3-246ENST00000636228 LCE1EQ5T753 118 aa4.11□□□□□ -1.75
CLN3-246ENST00000636228 LCE1BQ5T7P3 118 aa3.99□□□□□ -1.77
CLN3-246ENST00000636228 H3BS24 57 aa3.98□□□□□ -1.77
CLN3-246ENST00000636228 KRTAP4-2Q9BYR5 136 aa3.96□□□□□ -1.78
CLN3-246ENST00000636228 LUZP6Q538Z0 58 aa3.92□□□□□ -1.78
CLN3-246ENST00000636228 LCE1CQ5T751 118 aa3.82□□□□□ -1.8
CLN3-246ENST00000636228 KRTAP4-12Q9BQ66 201 aa3.75□□□□□ -1.81
CLN3-246ENST00000636228 NDUFAF8A1L188 74 aa3.57□□□□□ -1.84
CLN3-246ENST00000636228 KRTAP5-11Q6L8G4 156 aa3.48□□□□□ -1.85
CLN3-246ENST00000636228 LCE3DQ9BYE3 92 aa3.48□□□□□ -1.85
CLN3-246ENST00000636228 LCE1FQ5T754 118 aa3.42□□□□□ -1.86
CLN3-246ENST00000636228 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.42□□□□□ -1.86
CLN3-246ENST00000636228 A0A0A0MQY5 61 aa3.39□□□□□ -1.87
CLN3-246ENST00000636228 LCE3EQ5T5B0 92 aa3.31□□□□□ -1.88
CLN3-246ENST00000636228 PHGR1C9JFL3 82 aa3.28□□□□□ -1.88
CLN3-246ENST00000636228 KRTAP21-2Q3LI59 83 aa3.2□□□□□ -1.9
CLN3-246ENST00000636228 KRTAP4-4Q9BYR3 166 aa3.04□□□□□ -1.92
CLN3-246ENST00000636228 INE1O15225 51 aa3.03□□□□□ -1.92
CLN3-246ENST00000636228 MUC19Q7Z5P9 8384 aa2.91□□□□□ -1.94
CLN3-246ENST00000636228 PRM1P04553 51 aa2.72□□□□□ -1.97
CLN3-246ENST00000636228 KRTAP21-1Q3LI58 79 aa2.46□□□□□ -2.02
CLN3-246ENST00000636228 MUC16Q8WXI7 14507 aa2□□□□□ -2.09
Retrieved 77 of 20,778 RNA–protein pairs in 98.5 ms