RNA–Protein interactions for RNA: ENST00000631023.2

CLN3-240, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-240ENST00000631023 LCE5AQ5TCM9 118 aa7.55□□□□□ -1.2
CLN3-240ENST00000631023 LCE3BQ5TA77 95 aa7.54□□□□□ -1.2
CLN3-240ENST00000631023 KRTAP25-1Q3LHN0 102 aa7.46□□□□□ -1.21
CLN3-240ENST00000631023 MT1GP13640 62 aa7.46□□□□□ -1.22
CLN3-240ENST00000631023 PP632Q6XCG6 107 aa7.42□□□□□ -1.22
CLN3-240ENST00000631023 MT1LQ93083 61 aa7.37□□□□□ -1.23
CLN3-240ENST00000631023 KRTAP12-3P60328 96 aa7.33□□□□□ -1.24
CLN3-240ENST00000631023 MT1MQ8N339 61 aa7.29□□□□□ -1.24
CLN3-240ENST00000631023 CDC42SE1Q9NRR8 79 aa7.29□□□□□ -1.24
CLN3-240ENST00000631023 DSTQ03001 7570 aaKnown RBP7.28□□□□□ -1.24
CLN3-240ENST00000631023 KRTAP23-1A1A580 65 aa7.21□□□□□ -1.25
CLN3-240ENST00000631023 ROMO1P60602 79 aa7.16□□□□□ -1.26
CLN3-240ENST00000631023 KRTAP4-3Q9BYR4 195 aa7.08□□□□□ -1.28
CLN3-240ENST00000631023 PRO0628Q9UI54 55 aa7.03□□□□□ -1.28
CLN3-240ENST00000631023 KRTAP4-7Q9BYR0 210 aa7.01□□□□□ -1.29
CLN3-240ENST00000631023 KRTAP19-4Q3LI73 84 aa6.99□□□□□ -1.29
CLN3-240ENST00000631023 BRK1Q8WUW1 75 aa6.99□□□□□ -1.29
CLN3-240ENST00000631023 KRTAP15-1Q3LI76 137 aa6.95□□□□□ -1.3
CLN3-240ENST00000631023 KRTAP4-9Q9BYQ8 210 aa6.92□□□□□ -1.3
CLN3-240ENST00000631023 LCE4AQ5TA78 99 aa6.91□□□□□ -1.3
CLN3-240ENST00000631023 LCE1DQ5T752 114 aa6.8□□□□□ -1.32
CLN3-240ENST00000631023 KRTAP5-4Q6L8H1 288 aa6.79□□□□□ -1.32
CLN3-240ENST00000631023 LCE3CQ5T5A8 94 aa6.78□□□□□ -1.32
CLN3-240ENST00000631023 MT4P47944 62 aa6.77□□□□□ -1.33
CLN3-240ENST00000631023 HMCN1Q96RW7 5635 aa6.66□□□□□ -1.34
CLN3-240ENST00000631023 KRTAP5-5Q701N2 237 aaPredicted RBP6.65□□□□□ -1.35
CLN3-240ENST00000631023 LOC100996750A0A140TA64 210 aa6.62□□□□□ -1.35
CLN3-240ENST00000631023 PMAIP1Q13794 54 aa6.61□□□□□ -1.35
CLN3-240ENST00000631023 KRTAP4-6Q9BYQ5 205 aa6.6□□□□□ -1.35
CLN3-240ENST00000631023 KRTAP12-4P60329 112 aa6.48□□□□□ -1.37
CLN3-240ENST00000631023 GPR98Q8WXG9 6306 aa6.46□□□□□ -1.38
CLN3-240ENST00000631023 KTN1-AS1Q86SY8 53 aa6.45□□□□□ -1.38
CLN3-240ENST00000631023 SPRR5A0A1B0GTR4 108 aa6.43□□□□□ -1.38
CLN3-240ENST00000631023 KRTAP20-2Q3LI61 65 aa6.4□□□□□ -1.39
CLN3-240ENST00000631023 AHNAK2Q8IVF2 5795 aa6.37□□□□□ -1.39
CLN3-240ENST00000631023 KRTAP9-6A8MVA2 160 aa6.33□□□□□ -1.4
CLN3-240ENST00000631023 SYNE1Q8NF91 8797 aaKnown RBP6.33□□□□□ -1.4
CLN3-240ENST00000631023 MT1AP04731 61 aa6.29□□□□□ -1.4
CLN3-240ENST00000631023 KRTAP6-1Q3LI64 71 aa6.23□□□□□ -1.41
CLN3-240ENST00000631023 KRTAP5-3Q6L8H2 238 aa6.18□□□□□ -1.42
CLN3-240ENST00000631023 KRTAP5-10Q6L8G5 202 aa6.17□□□□□ -1.42
CLN3-240ENST00000631023 PRAC1Q96KF2 57 aa6.15□□□□□ -1.42
CLN3-240ENST00000631023 KRTAP9-4Q9BYQ2 154 aa6.06□□□□□ -1.44
CLN3-240ENST00000631023 KRTAP5-2Q701N4 177 aa5.99□□□□□ -1.45
CLN3-240ENST00000631023 KRTAP5-7Q6L8G8 165 aa5.91□□□□□ -1.46
CLN3-240ENST00000631023 KRTAP6-2Q3LI66 62 aa5.9□□□□□ -1.46
CLN3-240ENST00000631023 KRTAP4-11Q9BYQ6 195 aa5.79□□□□□ -1.48
CLN3-240ENST00000631023 MT3P25713 68 aa5.77□□□□□ -1.49
CLN3-240ENST00000631023 KRTAP5-8O75690 187 aa5.57□□□□□ -1.52
CLN3-240ENST00000631023 OBSCNQ5VST9 7968 aa5.52□□□□□ -1.53
CLN3-240ENST00000631023 H3BS24 57 aa5.34□□□□□ -1.55
CLN3-240ENST00000631023 KRTAP5-1Q6L8H4 278 aa5.32□□□□□ -1.56
CLN3-240ENST00000631023 KRTAP9-9Q9BYP9 154 aa5.29□□□□□ -1.56
CLN3-240ENST00000631023 LCE1EQ5T753 118 aa5.24□□□□□ -1.57
CLN3-240ENST00000631023 MUC5ACP98088 5654 aa5.2□□□□□ -1.58
CLN3-240ENST00000631023 LUZP6Q538Z0 58 aa5.18□□□□□ -1.58
CLN3-240ENST00000631023 AHNAKQ09666 5890 aaKnown RBP5.16□□□□□ -1.58
CLN3-240ENST00000631023 MUC5BQ9HC84 5762 aaPredicted RBP5.16□□□□□ -1.58
CLN3-240ENST00000631023 NDUFAF8A1L188 74 aa5.1□□□□□ -1.59
CLN3-240ENST00000631023 LCE3DQ9BYE3 92 aa4.95□□□□□ -1.62
CLN3-240ENST00000631023 LCE1BQ5T7P3 118 aa4.9□□□□□ -1.63
CLN3-240ENST00000631023 KRTAP4-2Q9BYR5 136 aa4.87□□□□□ -1.63
CLN3-240ENST00000631023 LCE1CQ5T751 118 aa4.86□□□□□ -1.63
CLN3-240ENST00000631023 LCE3EQ5T5B0 92 aa4.7□□□□□ -1.66
CLN3-240ENST00000631023 A0A0A0MQY5 61 aa4.69□□□□□ -1.66
CLN3-240ENST00000631023 KRTAP5-6Q6L8G9 129 aaPredicted RBP4.44□□□□□ -1.7
CLN3-240ENST00000631023 KRTAP5-11Q6L8G4 156 aa4.36□□□□□ -1.71
CLN3-240ENST00000631023 KRTAP4-12Q9BQ66 201 aa4.33□□□□□ -1.72
CLN3-240ENST00000631023 INE1O15225 51 aa4.27□□□□□ -1.73
CLN3-240ENST00000631023 LCE1FQ5T754 118 aa4.21□□□□□ -1.74
CLN3-240ENST00000631023 KRTAP21-2Q3LI59 83 aa4.09□□□□□ -1.75
CLN3-240ENST00000631023 PHGR1C9JFL3 82 aa3.76□□□□□ -1.81
CLN3-240ENST00000631023 KRTAP4-4Q9BYR3 166 aa3.71□□□□□ -1.82
CLN3-240ENST00000631023 PRM1P04553 51 aa3.66□□□□□ -1.82
CLN3-240ENST00000631023 MUC19Q7Z5P9 8384 aa3.4□□□□□ -1.86
CLN3-240ENST00000631023 KRTAP21-1Q3LI58 79 aa2.74□□□□□ -1.97
CLN3-240ENST00000631023 MUC16Q8WXI7 14507 aa2.48□□□□□ -2.01
Retrieved 77 of 20,778 RNA–protein pairs in 95.3 ms