RNA–Protein interactions for RNA: ENST00000625244.2

SNX1-214, Transcript of sorting nexin 1, humanhuman

TSL 5 BASIC

Gene SNX1, Length 324 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-214ENST00000625244 KRTAP13-4Q3LI77 160 aa5.27□□□□□ -1.57
SNX1-214ENST00000625244 LINC01558Q9Y6Z2 57 aa5.27□□□□□ -1.57
SNX1-214ENST00000625244 SPATA8Q6RVD6 105 aa5.24□□□□□ -1.57
SNX1-214ENST00000625244 SMIM26A0A096LP01 95 aa5.23□□□□□ -1.57
SNX1-214ENST00000625244 A0A0D9SG42 100 aa5.23□□□□□ -1.57
SNX1-214ENST00000625244 KRTAP19-7Q3SYF9 63 aa5.21□□□□□ -1.58
SNX1-214ENST00000625244 V9GYY9 64 aa5.21□□□□□ -1.58
SNX1-214ENST00000625244 MT1EP04732 61 aa5.2□□□□□ -1.58
SNX1-214ENST00000625244 CAMK2N1Q7Z7J9 78 aa5.2□□□□□ -1.58
SNX1-214ENST00000625244 KRTAP5-4Q6L8H1 288 aa5.19□□□□□ -1.58
SNX1-214ENST00000625244 SPINT4Q6UDR6 99 aa5.16□□□□□ -1.58
SNX1-214ENST00000625244 UQCR11O14957 56 aa5.15□□□□□ -1.59
SNX1-214ENST00000625244 Q1T7F1 81 aa5.12□□□□□ -1.59
SNX1-214ENST00000625244 RPS28P62857 69 aaKnown RBP5.1□□□□□ -1.59
SNX1-214ENST00000625244 A8MU10 97 aa5.09□□□□□ -1.59
SNX1-214ENST00000625244 PSPHP1O15172 72 aa5.08□□□□□ -1.6
SNX1-214ENST00000625244 KRTAP12-1P59990 96 aa5.08□□□□□ -1.6
SNX1-214ENST00000625244 MT1GP13640 62 aa5.07□□□□□ -1.6
SNX1-214ENST00000625244 MIR22HGQ0VDD5 57 aa5.04□□□□□ -1.6
SNX1-214ENST00000625244 AHNAKQ09666 5890 aaKnown RBP5.02□□□□□ -1.61
SNX1-214ENST00000625244 PP632Q6XCG6 107 aa5□□□□□ -1.61
SNX1-214ENST00000625244 MT1MQ8N339 61 aa5□□□□□ -1.61
SNX1-214ENST00000625244 K7ERS5 55 aa4.98□□□□□ -1.61
SNX1-214ENST00000625244 A6NED7 52 aa4.97□□□□□ -1.61
SNX1-214ENST00000625244 KRTAP20-2Q3LI61 65 aa4.96□□□□□ -1.62
SNX1-214ENST00000625244 KRTAP4-3Q9BYR4 195 aa4.96□□□□□ -1.62
SNX1-214ENST00000625244 MUC5BQ9HC84 5762 aaPredicted RBP4.93□□□□□ -1.62
SNX1-214ENST00000625244 MUC5ACP98088 5654 aa4.9□□□□□ -1.63
SNX1-214ENST00000625244 KRTAP19-5Q3LI72 72 aa4.88□□□□□ -1.63
SNX1-214ENST00000625244 TNP1P09430 55 aa4.85□□□□□ -1.63
SNX1-214ENST00000625244 MT1LQ93083 61 aa4.84□□□□□ -1.63
SNX1-214ENST00000625244 C10orf95Q9H7T3 257 aa4.81□□□□□ -1.64
SNX1-214ENST00000625244 CDC42SE1Q9NRR8 79 aa4.77□□□□□ -1.65
SNX1-214ENST00000625244 SYNE1Q8NF91 8797 aaKnown RBP4.74□□□□□ -1.65
SNX1-214ENST00000625244 KRTAP25-1Q3LHN0 102 aa4.7□□□□□ -1.66
SNX1-214ENST00000625244 KRTAP12-4P60329 112 aa4.68□□□□□ -1.66
SNX1-214ENST00000625244 KRTAP5-5Q701N2 237 aaPredicted RBP4.66□□□□□ -1.66
SNX1-214ENST00000625244 LCE3AQ5TA76 89 aa4.65□□□□□ -1.67
SNX1-214ENST00000625244 KRTAP5-8O75690 187 aa4.62□□□□□ -1.67
SNX1-214ENST00000625244 ROMO1P60602 79 aa4.61□□□□□ -1.67
SNX1-214ENST00000625244 BRK1Q8WUW1 75 aa4.58□□□□□ -1.68
SNX1-214ENST00000625244 KRTAP23-1A1A580 65 aa4.54□□□□□ -1.68
SNX1-214ENST00000625244 KRTAP15-1Q3LI76 137 aa4.52□□□□□ -1.69
SNX1-214ENST00000625244 KRTAP12-3P60328 96 aa4.5□□□□□ -1.69
SNX1-214ENST00000625244 OBSCNQ5VST9 7968 aa4.47□□□□□ -1.69
SNX1-214ENST00000625244 KRTAP5-2Q701N4 177 aa4.42□□□□□ -1.7
SNX1-214ENST00000625244 PMAIP1Q13794 54 aa4.32□□□□□ -1.72
SNX1-214ENST00000625244 PRO0628Q9UI54 55 aa4.23□□□□□ -1.73
SNX1-214ENST00000625244 LCE3CQ5T5A8 94 aa4.16□□□□□ -1.74
SNX1-214ENST00000625244 KRTAP6-1Q3LI64 71 aa4.15□□□□□ -1.75
SNX1-214ENST00000625244 KRTAP5-1Q6L8H4 278 aa4.12□□□□□ -1.75
SNX1-214ENST00000625244 KRTAP6-2Q3LI66 62 aa4.1□□□□□ -1.75
SNX1-214ENST00000625244 MT1AP04731 61 aa4.08□□□□□ -1.76
SNX1-214ENST00000625244 PRAC1Q96KF2 57 aa4.03□□□□□ -1.76
SNX1-214ENST00000625244 KTN1-AS1Q86SY8 53 aa3.99□□□□□ -1.77
SNX1-214ENST00000625244 SVIPQ8NHG7 77 aa3.85□□□□□ -1.79
SNX1-214ENST00000625244 KRTAP9-6A8MVA2 160 aa3.84□□□□□ -1.79
SNX1-214ENST00000625244 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.84□□□□□ -1.79
SNX1-214ENST00000625244 MT3P25713 68 aa3.76□□□□□ -1.81
SNX1-214ENST00000625244 KRTAP5-11Q6L8G4 156 aa3.73□□□□□ -1.81
SNX1-214ENST00000625244 LCE1EQ5T753 118 aa3.67□□□□□ -1.82
SNX1-214ENST00000625244 LCE1BQ5T7P3 118 aa3.51□□□□□ -1.85
SNX1-214ENST00000625244 LUZP6Q538Z0 58 aa3.49□□□□□ -1.85
SNX1-214ENST00000625244 LCE1CQ5T751 118 aa3.38□□□□□ -1.87
SNX1-214ENST00000625244 PHGR1C9JFL3 82 aa3.31□□□□□ -1.88
SNX1-214ENST00000625244 LCE1FQ5T754 118 aa3.19□□□□□ -1.9
SNX1-214ENST00000625244 KRTAP4-4Q9BYR3 166 aa3.18□□□□□ -1.9
SNX1-214ENST00000625244 LCE3DQ9BYE3 92 aa3.08□□□□□ -1.92
SNX1-214ENST00000625244 NDUFAF8A1L188 74 aa3.01□□□□□ -1.93
SNX1-214ENST00000625244 LCE3EQ5T5B0 92 aa2.94□□□□□ -1.94
SNX1-214ENST00000625244 MUC19Q7Z5P9 8384 aa2.79□□□□□ -1.96
SNX1-214ENST00000625244 A0A0A0MQY5 61 aa2.77□□□□□ -1.97
SNX1-214ENST00000625244 KRTAP21-2Q3LI59 83 aa2.74□□□□□ -1.97
SNX1-214ENST00000625244 INE1O15225 51 aa2.5□□□□□ -2.01
SNX1-214ENST00000625244 KRTAP21-1Q3LI58 79 aa2.5□□□□□ -2.01
SNX1-214ENST00000625244 PRM1P04553 51 aa2.35□□□□□ -2.03
SNX1-214ENST00000625244 MUC16Q8WXI7 14507 aa1.93□□□□□ -2.1
Retrieved 77 of 20,778 RNA–protein pairs in 5.8 ms