RNA–Protein interactions for RNA: ENST00000625216.2

PNKP-217, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 629 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-217ENST00000625216 SPRR2DP22532 72 aa4.91□□□□□ -1.62
PNKP-217ENST00000625216 KTN1-AS1Q86SY8 53 aa4.86□□□□□ -1.63
PNKP-217ENST00000625216 PRAC1Q96KF2 57 aa4.85□□□□□ -1.63
PNKP-217ENST00000625216 LCE3AQ5TA76 89 aa4.8□□□□□ -1.64
PNKP-217ENST00000625216 LCE3BQ5TA77 95 aa4.79□□□□□ -1.64
PNKP-217ENST00000625216 KRTAP23-1A1A580 65 aa4.73□□□□□ -1.65
PNKP-217ENST00000625216 KRTAP19-7Q3SYF9 63 aa4.72□□□□□ -1.65
PNKP-217ENST00000625216 PP632Q6XCG6 107 aa4.7□□□□□ -1.66
PNKP-217ENST00000625216 MT1EP04732 61 aa4.68□□□□□ -1.66
PNKP-217ENST00000625216 LCE5AQ5TCM9 118 aa4.67□□□□□ -1.66
PNKP-217ENST00000625216 KRTAP19-3Q7Z4W3 81 aa4.66□□□□□ -1.66
PNKP-217ENST00000625216 KRTAP19-5Q3LI72 72 aa4.63□□□□□ -1.67
PNKP-217ENST00000625216 DSTQ03001 7570 aaKnown RBP4.63□□□□□ -1.67
PNKP-217ENST00000625216 SVIPQ8NHG7 77 aa4.59□□□□□ -1.67
PNKP-217ENST00000625216 GPR98Q8WXG9 6306 aa4.58□□□□□ -1.68
PNKP-217ENST00000625216 KRTAP12-3P60328 96 aa4.58□□□□□ -1.68
PNKP-217ENST00000625216 MT1GP13640 62 aa4.57□□□□□ -1.68
PNKP-217ENST00000625216 MT1LQ93083 61 aa4.47□□□□□ -1.69
PNKP-217ENST00000625216 KRTAP15-1Q3LI76 137 aa4.45□□□□□ -1.7
PNKP-217ENST00000625216 MT1MQ8N339 61 aa4.45□□□□□ -1.7
PNKP-217ENST00000625216 KRTAP4-9Q9BYQ8 210 aa4.43□□□□□ -1.7
PNKP-217ENST00000625216 LCE4AQ5TA78 99 aa4.38□□□□□ -1.71
PNKP-217ENST00000625216 HMCN1Q96RW7 5635 aa4.34□□□□□ -1.71
PNKP-217ENST00000625216 LCE1DQ5T752 114 aa4.34□□□□□ -1.71
PNKP-217ENST00000625216 KRTAP4-3Q9BYR4 195 aa4.31□□□□□ -1.72
PNKP-217ENST00000625216 MT4P47944 62 aa4.28□□□□□ -1.72
PNKP-217ENST00000625216 KRTAP5-4Q6L8H1 288 aa4.28□□□□□ -1.72
PNKP-217ENST00000625216 KRTAP4-7Q9BYR0 210 aa4.28□□□□□ -1.72
PNKP-217ENST00000625216 LCE3CQ5T5A8 94 aa4.27□□□□□ -1.73
PNKP-217ENST00000625216 KRTAP19-4Q3LI73 84 aa4.24□□□□□ -1.73
PNKP-217ENST00000625216 AHNAK2Q8IVF2 5795 aa4.19□□□□□ -1.74
PNKP-217ENST00000625216 SPRR5A0A1B0GTR4 108 aa4.17□□□□□ -1.74
PNKP-217ENST00000625216 KRTAP4-6Q9BYQ5 205 aa4.16□□□□□ -1.74
PNKP-217ENST00000625216 KRTAP5-5Q701N2 237 aaPredicted RBP4.1□□□□□ -1.75
PNKP-217ENST00000625216 KRTAP9-6A8MVA2 160 aa4.08□□□□□ -1.76
PNKP-217ENST00000625216 KRTAP5-10Q6L8G5 202 aa4.08□□□□□ -1.76
PNKP-217ENST00000625216 KRTAP12-4P60329 112 aa4.03□□□□□ -1.76
PNKP-217ENST00000625216 KRTAP20-2Q3LI61 65 aa4.03□□□□□ -1.76
PNKP-217ENST00000625216 LOC100996750A0A140TA64 210 aa4.02□□□□□ -1.77
PNKP-217ENST00000625216 SYNE1Q8NF91 8797 aaKnown RBP4□□□□□ -1.77
PNKP-217ENST00000625216 KRTAP5-3Q6L8H2 238 aa3.96□□□□□ -1.78
PNKP-217ENST00000625216 KRTAP5-7Q6L8G8 165 aa3.95□□□□□ -1.78
PNKP-217ENST00000625216 LUZP6Q538Z0 58 aa3.88□□□□□ -1.79
PNKP-217ENST00000625216 MT1AP04731 61 aa3.81□□□□□ -1.8
PNKP-217ENST00000625216 KRTAP6-1Q3LI64 71 aa3.77□□□□□ -1.81
PNKP-217ENST00000625216 NDUFAF8A1L188 74 aa3.75□□□□□ -1.81
PNKP-217ENST00000625216 KRTAP5-2Q701N4 177 aa3.74□□□□□ -1.81
PNKP-217ENST00000625216 KRTAP9-4Q9BYQ2 154 aa3.7□□□□□ -1.82
PNKP-217ENST00000625216 KRTAP4-11Q9BYQ6 195 aa3.69□□□□□ -1.82
PNKP-217ENST00000625216 KRTAP6-2Q3LI66 62 aa3.61□□□□□ -1.83
PNKP-217ENST00000625216 OBSCNQ5VST9 7968 aa3.55□□□□□ -1.84
PNKP-217ENST00000625216 KRTAP5-8O75690 187 aa3.55□□□□□ -1.84
PNKP-217ENST00000625216 MT3P25713 68 aa3.52□□□□□ -1.85
PNKP-217ENST00000625216 AHNAKQ09666 5890 aaKnown RBP3.5□□□□□ -1.85
PNKP-217ENST00000625216 MUC5BQ9HC84 5762 aaPredicted RBP3.47□□□□□ -1.85
PNKP-217ENST00000625216 MUC5ACP98088 5654 aa3.45□□□□□ -1.86
PNKP-217ENST00000625216 KRTAP9-9Q9BYP9 154 aa3.4□□□□□ -1.87
PNKP-217ENST00000625216 KRTAP5-1Q6L8H4 278 aa3.35□□□□□ -1.87
PNKP-217ENST00000625216 LCE1EQ5T753 118 aa3.25□□□□□ -1.89
PNKP-217ENST00000625216 A0A0A0MQY5 61 aa3.21□□□□□ -1.9
PNKP-217ENST00000625216 LCE3DQ9BYE3 92 aa3.17□□□□□ -1.9
PNKP-217ENST00000625216 LCE3EQ5T5B0 92 aa3.07□□□□□ -1.92
PNKP-217ENST00000625216 INE1O15225 51 aa3.06□□□□□ -1.92
PNKP-217ENST00000625216 H3BS24 57 aa3.04□□□□□ -1.92
PNKP-217ENST00000625216 KRTAP4-2Q9BYR5 136 aa3.02□□□□□ -1.93
PNKP-217ENST00000625216 LCE1BQ5T7P3 118 aa3.01□□□□□ -1.93
PNKP-217ENST00000625216 LCE1CQ5T751 118 aa3□□□□□ -1.93
PNKP-217ENST00000625216 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.73□□□□□ -1.97
PNKP-217ENST00000625216 KRTAP4-12Q9BQ66 201 aa2.72□□□□□ -1.97
PNKP-217ENST00000625216 KRTAP5-11Q6L8G4 156 aa2.71□□□□□ -1.98
PNKP-217ENST00000625216 LCE1FQ5T754 118 aa2.68□□□□□ -1.98
PNKP-217ENST00000625216 PRM1P04553 51 aa2.65□□□□□ -1.99
PNKP-217ENST00000625216 KRTAP21-2Q3LI59 83 aa2.49□□□□□ -2.01
PNKP-217ENST00000625216 PHGR1C9JFL3 82 aa2.39□□□□□ -2.03
PNKP-217ENST00000625216 KRTAP4-4Q9BYR3 166 aa2.25□□□□□ -2.05
PNKP-217ENST00000625216 MUC19Q7Z5P9 8384 aa2.19□□□□□ -2.06
PNKP-217ENST00000625216 KRTAP21-1Q3LI58 79 aa1.82□□□□□ -2.12
PNKP-217ENST00000625216 MUC16Q8WXI7 14507 aa1.56□□□□□ -2.16
Retrieved 78 of 20,778 RNA–protein pairs in 224 ms