RNA–Protein interactions for RNA: ENST00000623985.3

LINC00643-206, long intergenic non-protein coding RNA 643, humanhuman

TSL 1 (best)

Gene LINC00643, Length 864 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-206ENST00000623985 KRTAP19-3Q7Z4W3 81 aa5.49□□□□□ -1.53
LINC00643-206ENST00000623985 A8MU10 97 aa5.47□□□□□ -1.53
LINC00643-206ENST00000623985 DSTQ03001 7570 aaKnown RBP5.45□□□□□ -1.54
LINC00643-206ENST00000623985 KRTAP19-5Q3LI72 72 aa5.41□□□□□ -1.54
LINC00643-206ENST00000623985 UQCR11O14957 56 aa5.35□□□□□ -1.55
LINC00643-206ENST00000623985 TNP1P09430 55 aa5.35□□□□□ -1.55
LINC00643-206ENST00000623985 MT1GP13640 62 aa5.35□□□□□ -1.55
LINC00643-206ENST00000623985 C10orf95Q9H7T3 257 aa5.34□□□□□ -1.55
LINC00643-206ENST00000623985 PP632Q6XCG6 107 aa5.33□□□□□ -1.56
LINC00643-206ENST00000623985 LCE3AQ5TA76 89 aa5.31□□□□□ -1.56
LINC00643-206ENST00000623985 V9GYY9 64 aa5.31□□□□□ -1.56
LINC00643-206ENST00000623985 MT1LQ93083 61 aa5.28□□□□□ -1.56
LINC00643-206ENST00000623985 Q1T7F1 81 aa5.27□□□□□ -1.57
LINC00643-206ENST00000623985 MT1MQ8N339 61 aa5.26□□□□□ -1.57
LINC00643-206ENST00000623985 MIR22HGQ0VDD5 57 aa5.21□□□□□ -1.58
LINC00643-206ENST00000623985 RPS28P62857 69 aaKnown RBP5.16□□□□□ -1.58
LINC00643-206ENST00000623985 PSPHP1O15172 72 aa5.14□□□□□ -1.59
LINC00643-206ENST00000623985 PCP4P48539 62 aa5.12□□□□□ -1.59
LINC00643-206ENST00000623985 K7ERS5 55 aa5.11□□□□□ -1.59
LINC00643-206ENST00000623985 KRTAP12-3P60328 96 aa5.11□□□□□ -1.59
LINC00643-206ENST00000623985 KRTAP5-3Q6L8H2 238 aa5.11□□□□□ -1.59
LINC00643-206ENST00000623985 KRTAP4-3Q9BYR4 195 aa5.1□□□□□ -1.59
LINC00643-206ENST00000623985 KRTAP25-1Q3LHN0 102 aa5.05□□□□□ -1.6
LINC00643-206ENST00000623985 MT4P47944 62 aa5.03□□□□□ -1.6
LINC00643-206ENST00000623985 HMCN1Q96RW7 5635 aa5.03□□□□□ -1.6
LINC00643-206ENST00000623985 KRTAP5-4Q6L8H1 288 aa5.02□□□□□ -1.61
LINC00643-206ENST00000623985 GPR98Q8WXG9 6306 aa5□□□□□ -1.61
LINC00643-206ENST00000623985 A6NED7 52 aa5□□□□□ -1.61
LINC00643-206ENST00000623985 KRTAP23-1A1A580 65 aa4.94□□□□□ -1.62
LINC00643-206ENST00000623985 KRTAP15-1Q3LI76 137 aa4.87□□□□□ -1.63
LINC00643-206ENST00000623985 CDC42SE1Q9NRR8 79 aa4.85□□□□□ -1.63
LINC00643-206ENST00000623985 KRTAP5-5Q701N2 237 aaPredicted RBP4.84□□□□□ -1.63
LINC00643-206ENST00000623985 AHNAK2Q8IVF2 5795 aa4.82□□□□□ -1.64
LINC00643-206ENST00000623985 ROMO1P60602 79 aa4.78□□□□□ -1.64
LINC00643-206ENST00000623985 KRTAP5-10Q6L8G5 202 aa4.74□□□□□ -1.65
LINC00643-206ENST00000623985 KRTAP20-2Q3LI61 65 aa4.73□□□□□ -1.65
LINC00643-206ENST00000623985 SPRR5A0A1B0GTR4 108 aa4.72□□□□□ -1.65
LINC00643-206ENST00000623985 LCE3CQ5T5A8 94 aa4.7□□□□□ -1.66
LINC00643-206ENST00000623985 KRTAP12-4P60329 112 aa4.69□□□□□ -1.66
LINC00643-206ENST00000623985 SYNE1Q8NF91 8797 aaKnown RBP4.62□□□□□ -1.67
LINC00643-206ENST00000623985 KRTAP5-7Q6L8G8 165 aa4.56□□□□□ -1.68
LINC00643-206ENST00000623985 MT1AP04731 61 aa4.5□□□□□ -1.69
LINC00643-206ENST00000623985 KRTAP6-1Q3LI64 71 aa4.45□□□□□ -1.7
LINC00643-206ENST00000623985 KRTAP9-6A8MVA2 160 aa4.42□□□□□ -1.7
LINC00643-206ENST00000623985 BRK1Q8WUW1 75 aa4.42□□□□□ -1.7
LINC00643-206ENST00000623985 KRTAP5-2Q701N4 177 aa4.41□□□□□ -1.7
LINC00643-206ENST00000623985 KRTAP6-2Q3LI66 62 aa4.25□□□□□ -1.73
LINC00643-206ENST00000623985 PMAIP1Q13794 54 aa4.2□□□□□ -1.74
LINC00643-206ENST00000623985 KRTAP5-8O75690 187 aa4.17□□□□□ -1.74
LINC00643-206ENST00000623985 OBSCNQ5VST9 7968 aa4.14□□□□□ -1.75
LINC00643-206ENST00000623985 MT3P25713 68 aa4.1□□□□□ -1.75
LINC00643-206ENST00000623985 PRO0628Q9UI54 55 aa4.03□□□□□ -1.76
LINC00643-206ENST00000623985 MUC5BQ9HC84 5762 aaPredicted RBP3.95□□□□□ -1.78
LINC00643-206ENST00000623985 MUC5ACP98088 5654 aa3.95□□□□□ -1.78
LINC00643-206ENST00000623985 KRTAP5-1Q6L8H4 278 aa3.94□□□□□ -1.78
LINC00643-206ENST00000623985 PRAC1Q96KF2 57 aa3.94□□□□□ -1.78
LINC00643-206ENST00000623985 AHNAKQ09666 5890 aaKnown RBP3.89□□□□□ -1.79
LINC00643-206ENST00000623985 KRTAP5-11Q6L8G4 156 aa3.88□□□□□ -1.79
LINC00643-206ENST00000623985 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.85□□□□□ -1.79
LINC00643-206ENST00000623985 KTN1-AS1Q86SY8 53 aa3.81□□□□□ -1.8
LINC00643-206ENST00000623985 LCE1EQ5T753 118 aa3.78□□□□□ -1.8
LINC00643-206ENST00000623985 SVIPQ8NHG7 77 aa3.54□□□□□ -1.84
LINC00643-206ENST00000623985 LCE1BQ5T7P3 118 aa3.53□□□□□ -1.84
LINC00643-206ENST00000623985 LCE1CQ5T751 118 aa3.52□□□□□ -1.85
LINC00643-206ENST00000623985 LUZP6Q538Z0 58 aa3.39□□□□□ -1.87
LINC00643-206ENST00000623985 A0A0A0MQY5 61 aa3.38□□□□□ -1.87
LINC00643-206ENST00000623985 LCE3DQ9BYE3 92 aa3.38□□□□□ -1.87
LINC00643-206ENST00000623985 LCE1FQ5T754 118 aa3.34□□□□□ -1.87
LINC00643-206ENST00000623985 KRTAP4-4Q9BYR3 166 aa3.22□□□□□ -1.89
LINC00643-206ENST00000623985 LCE3EQ5T5B0 92 aa3.19□□□□□ -1.9
LINC00643-206ENST00000623985 KRTAP21-2Q3LI59 83 aa2.93□□□□□ -1.94
LINC00643-206ENST00000623985 NDUFAF8A1L188 74 aa2.89□□□□□ -1.95
LINC00643-206ENST00000623985 PHGR1C9JFL3 82 aa2.76□□□□□ -1.97
LINC00643-206ENST00000623985 MUC19Q7Z5P9 8384 aa2.51□□□□□ -2.01
LINC00643-206ENST00000623985 PRM1P04553 51 aa2.41□□□□□ -2.02
LINC00643-206ENST00000623985 INE1O15225 51 aa2.34□□□□□ -2.03
LINC00643-206ENST00000623985 KRTAP21-1Q3LI58 79 aa2.1□□□□□ -2.07
LINC00643-206ENST00000623985 MUC16Q8WXI7 14507 aa1.83□□□□□ -2.12
Retrieved 78 of 20,778 RNA–protein pairs in 43.9 ms