RNA–Protein interactions for RNA: ENST00000618700.4

UPF3A-211, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 1,210 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-211ENST00000618700 MUC12Q9UKN1 5478 aa7.75□□□□□ -1.17
UPF3A-211ENST00000618700 C10orf95Q9H7T3 257 aa7.74□□□□□ -1.17
UPF3A-211ENST00000618700 K7ERS5 55 aa7.72□□□□□ -1.17
UPF3A-211ENST00000618700 KRTAP20-1Q3LI63 56 aa7.7□□□□□ -1.18
UPF3A-211ENST00000618700 CDC42SE1Q9NRR8 79 aa7.69□□□□□ -1.18
UPF3A-211ENST00000618700 KRTAP8-1Q8IUC2 63 aa7.68□□□□□ -1.18
UPF3A-211ENST00000618700 TNP1P09430 55 aa7.58□□□□□ -1.2
UPF3A-211ENST00000618700 MDN1Q9NU22 5596 aa7.56□□□□□ -1.2
UPF3A-211ENST00000618700 SPRR2FQ96RM1 72 aa7.54□□□□□ -1.2
UPF3A-211ENST00000618700 KRTAP25-1Q3LHN0 102 aa7.43□□□□□ -1.22
UPF3A-211ENST00000618700 SPRR2EP22531 72 aa7.41□□□□□ -1.22
UPF3A-211ENST00000618700 SPRR2BP35325 72 aa7.41□□□□□ -1.22
UPF3A-211ENST00000618700 SPRR2AP35326 72 aa7.41□□□□□ -1.22
UPF3A-211ENST00000618700 LCE3AQ5TA76 89 aa7.41□□□□□ -1.22
UPF3A-211ENST00000618700 KRTAP19-7Q3SYF9 63 aa7.4□□□□□ -1.22
UPF3A-211ENST00000618700 MT3P25713 68 aa7.39□□□□□ -1.23
UPF3A-211ENST00000618700 BRK1Q8WUW1 75 aa7.35□□□□□ -1.23
UPF3A-211ENST00000618700 ROMO1P60602 79 aa7.34□□□□□ -1.23
UPF3A-211ENST00000618700 KRTAP19-5Q3LI72 72 aa7.31□□□□□ -1.24
UPF3A-211ENST00000618700 MT1EP04732 61 aa7.3□□□□□ -1.24
UPF3A-211ENST00000618700 KRTAP2-3P0C7H8 128 aa7.26□□□□□ -1.25
UPF3A-211ENST00000618700 KRTAP2-4Q9BYR9 128 aa7.26□□□□□ -1.25
UPF3A-211ENST00000618700 SPRR2DP22532 72 aa7.16□□□□□ -1.26
UPF3A-211ENST00000618700 GPR98Q8WXG9 6306 aa7.14□□□□□ -1.27
UPF3A-211ENST00000618700 KRTAP19-3Q7Z4W3 81 aa7.13□□□□□ -1.27
UPF3A-211ENST00000618700 KRTAP12-3P60328 96 aa7.12□□□□□ -1.27
UPF3A-211ENST00000618700 KRTAP5-11Q6L8G4 156 aa7.08□□□□□ -1.28
UPF3A-211ENST00000618700 MT1LQ93083 61 aa7.06□□□□□ -1.28
UPF3A-211ENST00000618700 LCE1EQ5T753 118 aa7.02□□□□□ -1.29
UPF3A-211ENST00000618700 PP632Q6XCG6 107 aa7.02□□□□□ -1.29
UPF3A-211ENST00000618700 KRTAP2-1Q9BYU5 128 aa7.02□□□□□ -1.29
UPF3A-211ENST00000618700 MT1GP13640 62 aa6.99□□□□□ -1.29
UPF3A-211ENST00000618700 PMAIP1Q13794 54 aa6.92□□□□□ -1.3
UPF3A-211ENST00000618700 MT1MQ8N339 61 aa6.91□□□□□ -1.3
UPF3A-211ENST00000618700 PRO0628Q9UI54 55 aa6.89□□□□□ -1.31
UPF3A-211ENST00000618700 KRTAP5-6Q6L8G9 129 aaPredicted RBP6.86□□□□□ -1.31
UPF3A-211ENST00000618700 LCE1FQ5T754 118 aa6.78□□□□□ -1.32
UPF3A-211ENST00000618700 DSTQ03001 7570 aaKnown RBP6.73□□□□□ -1.33
UPF3A-211ENST00000618700 KRTAP4-3Q9BYR4 195 aa6.71□□□□□ -1.34
UPF3A-211ENST00000618700 LCE3CQ5T5A8 94 aa6.61□□□□□ -1.35
UPF3A-211ENST00000618700 PRAC1Q96KF2 57 aa6.58□□□□□ -1.36
UPF3A-211ENST00000618700 KTN1-AS1Q86SY8 53 aa6.47□□□□□ -1.37
UPF3A-211ENST00000618700 NDUFAF8A1L188 74 aa6.42□□□□□ -1.38
UPF3A-211ENST00000618700 KRTAP9-6A8MVA2 160 aa6.32□□□□□ -1.4
UPF3A-211ENST00000618700 KRTAP5-5Q701N2 237 aaPredicted RBP6.32□□□□□ -1.4
UPF3A-211ENST00000618700 KRTAP5-4Q6L8H1 288 aa6.31□□□□□ -1.4
UPF3A-211ENST00000618700 HMCN1Q96RW7 5635 aa6.26□□□□□ -1.41
UPF3A-211ENST00000618700 MT4P47944 62 aa6.23□□□□□ -1.41
UPF3A-211ENST00000618700 AHNAK2Q8IVF2 5795 aa6.21□□□□□ -1.42
UPF3A-211ENST00000618700 KRTAP5-10Q6L8G5 202 aa6.08□□□□□ -1.44
UPF3A-211ENST00000618700 SPRR5A0A1B0GTR4 108 aa6.02□□□□□ -1.45
UPF3A-211ENST00000618700 KRTAP5-1Q6L8H4 278 aa6.02□□□□□ -1.45
UPF3A-211ENST00000618700 MT1AP04731 61 aa6.01□□□□□ -1.45
UPF3A-211ENST00000618700 SYNE1Q8NF91 8797 aaKnown RBP5.97□□□□□ -1.45
UPF3A-211ENST00000618700 KRTAP12-4P60329 112 aa5.96□□□□□ -1.46
UPF3A-211ENST00000618700 KRTAP6-1Q3LI64 71 aa5.94□□□□□ -1.46
UPF3A-211ENST00000618700 KRTAP5-7Q6L8G8 165 aa5.93□□□□□ -1.46
UPF3A-211ENST00000618700 KRTAP20-2Q3LI61 65 aa5.9□□□□□ -1.46
UPF3A-211ENST00000618700 LCE3EQ5T5B0 92 aa5.83□□□□□ -1.48
UPF3A-211ENST00000618700 KRTAP4-4Q9BYR3 166 aa5.73□□□□□ -1.49
UPF3A-211ENST00000618700 KRTAP5-2Q701N4 177 aa5.62□□□□□ -1.51
UPF3A-211ENST00000618700 KRTAP6-2Q3LI66 62 aa5.56□□□□□ -1.52
UPF3A-211ENST00000618700 AHNAKQ09666 5890 aaKnown RBP5.45□□□□□ -1.54
UPF3A-211ENST00000618700 LUZP6Q538Z0 58 aa5.42□□□□□ -1.54
UPF3A-211ENST00000618700 OBSCNQ5VST9 7968 aa5.32□□□□□ -1.56
UPF3A-211ENST00000618700 MUC5ACP98088 5654 aa5.32□□□□□ -1.56
UPF3A-211ENST00000618700 MUC5BQ9HC84 5762 aaPredicted RBP5.28□□□□□ -1.56
UPF3A-211ENST00000618700 KRTAP5-8O75690 187 aa5.17□□□□□ -1.58
UPF3A-211ENST00000618700 LCE3DQ9BYE3 92 aa4.85□□□□□ -1.63
UPF3A-211ENST00000618700 LCE1CQ5T751 118 aa4.64□□□□□ -1.67
UPF3A-211ENST00000618700 LCE1BQ5T7P3 118 aa4.64□□□□□ -1.67
UPF3A-211ENST00000618700 INE1O15225 51 aa4.01□□□□□ -1.77
UPF3A-211ENST00000618700 KRTAP21-2Q3LI59 83 aa3.91□□□□□ -1.78
UPF3A-211ENST00000618700 MUC19Q7Z5P9 8384 aa3.79□□□□□ -1.8
UPF3A-211ENST00000618700 PRM1P04553 51 aa3.78□□□□□ -1.8
UPF3A-211ENST00000618700 PHGR1C9JFL3 82 aa3.58□□□□□ -1.84
UPF3A-211ENST00000618700 KRTAP21-1Q3LI58 79 aa2.7□□□□□ -1.98
UPF3A-211ENST00000618700 MUC16Q8WXI7 14507 aa2.3□□□□□ -2.04
Retrieved 78 of 20,778 RNA–protein pairs in 6.2 ms