RNA–Protein interactions for RNA: ENST00000601849.1

VRK3-224, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 653 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-224ENST00000601849 Q1T7F1 81 aa3.6□□□□□ -1.83
VRK3-224ENST00000601849 KRTAP19-3Q7Z4W3 81 aa3.59□□□□□ -1.83
VRK3-224ENST00000601849 PSPHP1O15172 72 aa3.56□□□□□ -1.84
VRK3-224ENST00000601849 KRTAP19-7Q3SYF9 63 aa3.56□□□□□ -1.84
VRK3-224ENST00000601849 MT1EP04732 61 aa3.55□□□□□ -1.84
VRK3-224ENST00000601849 PP632Q6XCG6 107 aa3.55□□□□□ -1.84
VRK3-224ENST00000601849 KRTAP13-4Q3LI77 160 aa3.54□□□□□ -1.84
VRK3-224ENST00000601849 HMCN1Q96RW7 5635 aa3.53□□□□□ -1.84
VRK3-224ENST00000601849 A0A1B0GU33 70 aa3.53□□□□□ -1.84
VRK3-224ENST00000601849 MT1GP13640 62 aa3.52□□□□□ -1.85
VRK3-224ENST00000601849 PRAC1Q96KF2 57 aa3.52□□□□□ -1.85
VRK3-224ENST00000601849 A0A0D9SG42 100 aa3.51□□□□□ -1.85
VRK3-224ENST00000601849 UQCR11O14957 56 aa3.49□□□□□ -1.85
VRK3-224ENST00000601849 A6NED7 52 aa3.48□□□□□ -1.85
VRK3-224ENST00000601849 MT4P47944 62 aa3.47□□□□□ -1.85
VRK3-224ENST00000601849 SPINT4Q6UDR6 99 aa3.47□□□□□ -1.85
VRK3-224ENST00000601849 SPATA8Q6RVD6 105 aa3.46□□□□□ -1.86
VRK3-224ENST00000601849 KRTAP19-5Q3LI72 72 aa3.45□□□□□ -1.86
VRK3-224ENST00000601849 AHNAK2Q8IVF2 5795 aa3.44□□□□□ -1.86
VRK3-224ENST00000601849 MIR22HGQ0VDD5 57 aa3.44□□□□□ -1.86
VRK3-224ENST00000601849 MT1MQ8N339 61 aa3.4□□□□□ -1.87
VRK3-224ENST00000601849 A8MU10 97 aa3.39□□□□□ -1.87
VRK3-224ENST00000601849 KRTAP12-1P59990 96 aa3.38□□□□□ -1.87
VRK3-224ENST00000601849 CDC42SE1Q9NRR8 79 aa3.37□□□□□ -1.87
VRK3-224ENST00000601849 K7ERS5 55 aa3.36□□□□□ -1.87
VRK3-224ENST00000601849 BRK1Q8WUW1 75 aa3.36□□□□□ -1.87
VRK3-224ENST00000601849 MT1LQ93083 61 aa3.36□□□□□ -1.87
VRK3-224ENST00000601849 TNP1P09430 55 aa3.34□□□□□ -1.87
VRK3-224ENST00000601849 KRTAP5-10Q6L8G5 202 aa3.34□□□□□ -1.87
VRK3-224ENST00000601849 KRTAP5-4Q6L8H1 288 aa3.34□□□□□ -1.87
VRK3-224ENST00000601849 KRTAP5-3Q6L8H2 238 aa3.33□□□□□ -1.88
VRK3-224ENST00000601849 C10orf95Q9H7T3 257 aa3.31□□□□□ -1.88
VRK3-224ENST00000601849 KRTAP15-1Q3LI76 137 aa3.29□□□□□ -1.88
VRK3-224ENST00000601849 KRTAP4-3Q9BYR4 195 aa3.29□□□□□ -1.88
VRK3-224ENST00000601849 PRO0628Q9UI54 55 aa3.29□□□□□ -1.88
VRK3-224ENST00000601849 LCE3AQ5TA76 89 aa3.28□□□□□ -1.88
VRK3-224ENST00000601849 KRTAP5-7Q6L8G8 165 aa3.25□□□□□ -1.89
VRK3-224ENST00000601849 KRTAP12-3P60328 96 aa3.2□□□□□ -1.9
VRK3-224ENST00000601849 KRTAP12-4P60329 112 aa3.2□□□□□ -1.9
VRK3-224ENST00000601849 SPRR5A0A1B0GTR4 108 aa3.19□□□□□ -1.9
VRK3-224ENST00000601849 KRTAP20-2Q3LI61 65 aa3.18□□□□□ -1.9
VRK3-224ENST00000601849 PMAIP1Q13794 54 aa3.17□□□□□ -1.9
VRK3-224ENST00000601849 NDUFAF8A1L188 74 aa3.15□□□□□ -1.91
VRK3-224ENST00000601849 ROMO1P60602 79 aa3.15□□□□□ -1.91
VRK3-224ENST00000601849 KRTAP5-5Q701N2 237 aaPredicted RBP3.11□□□□□ -1.91
VRK3-224ENST00000601849 SYNE1Q8NF91 8797 aaKnown RBP3.11□□□□□ -1.91
VRK3-224ENST00000601849 KRTAP25-1Q3LHN0 102 aa3.09□□□□□ -1.91
VRK3-224ENST00000601849 LUZP6Q538Z0 58 aa3□□□□□ -1.93
VRK3-224ENST00000601849 KTN1-AS1Q86SY8 53 aa3□□□□□ -1.93
VRK3-224ENST00000601849 OBSCNQ5VST9 7968 aa2.97□□□□□ -1.93
VRK3-224ENST00000601849 LCE3CQ5T5A8 94 aa2.92□□□□□ -1.94
VRK3-224ENST00000601849 AHNAKQ09666 5890 aaKnown RBP2.92□□□□□ -1.94
VRK3-224ENST00000601849 MUC5BQ9HC84 5762 aaPredicted RBP2.9□□□□□ -1.94
VRK3-224ENST00000601849 KRTAP5-2Q701N4 177 aa2.88□□□□□ -1.95
VRK3-224ENST00000601849 MUC5ACP98088 5654 aa2.87□□□□□ -1.95
VRK3-224ENST00000601849 MT1AP04731 61 aa2.87□□□□□ -1.95
VRK3-224ENST00000601849 KRTAP5-8O75690 187 aa2.84□□□□□ -1.95
VRK3-224ENST00000601849 KRTAP6-1Q3LI64 71 aa2.84□□□□□ -1.95
VRK3-224ENST00000601849 KRTAP6-2Q3LI66 62 aa2.78□□□□□ -1.96
VRK3-224ENST00000601849 MT3P25713 68 aa2.71□□□□□ -1.98
VRK3-224ENST00000601849 KRTAP9-6A8MVA2 160 aa2.66□□□□□ -1.98
VRK3-224ENST00000601849 KRTAP5-1Q6L8H4 278 aa2.62□□□□□ -1.99
VRK3-224ENST00000601849 LCE1EQ5T753 118 aa2.51□□□□□ -2.01
VRK3-224ENST00000601849 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.5□□□□□ -2.01
VRK3-224ENST00000601849 KRTAP5-11Q6L8G4 156 aa2.49□□□□□ -2.01
VRK3-224ENST00000601849 LCE1FQ5T754 118 aa2.43□□□□□ -2.02
VRK3-224ENST00000601849 LCE1BQ5T7P3 118 aa2.37□□□□□ -2.03
VRK3-224ENST00000601849 LCE1CQ5T751 118 aa2.31□□□□□ -2.04
VRK3-224ENST00000601849 INE1O15225 51 aa2.13□□□□□ -2.07
VRK3-224ENST00000601849 LCE3DQ9BYE3 92 aa2.1□□□□□ -2.07
VRK3-224ENST00000601849 KRTAP4-4Q9BYR3 166 aa2.09□□□□□ -2.07
VRK3-224ENST00000601849 LCE3EQ5T5B0 92 aa2.06□□□□□ -2.08
VRK3-224ENST00000601849 PHGR1C9JFL3 82 aa2□□□□□ -2.09
VRK3-224ENST00000601849 KRTAP21-2Q3LI59 83 aa1.87□□□□□ -2.11
VRK3-224ENST00000601849 MUC19Q7Z5P9 8384 aa1.81□□□□□ -2.12
VRK3-224ENST00000601849 PRM1P04553 51 aa1.62□□□□□ -2.15
VRK3-224ENST00000601849 KRTAP21-1Q3LI58 79 aa1.53□□□□□ -2.16
VRK3-224ENST00000601849 MUC16Q8WXI7 14507 aa1.21□□□□□ -2.22
Retrieved 78 of 20,778 RNA–protein pairs in 59.9 ms