RNA–Protein interactions for RNA: ENST00000600840.1

TRIM28-214, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 338 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-214ENST00000600840 PP632Q6XCG6 107 aa3.55□□□□□ -1.84
TRIM28-214ENST00000600840 PRO2289Q9P1D8 64 aa3.54□□□□□ -1.84
TRIM28-214ENST00000600840 CAMK2N1Q7Z7J9 78 aa3.53□□□□□ -1.84
TRIM28-214ENST00000600840 KRTAP23-1A1A580 65 aa3.5□□□□□ -1.85
TRIM28-214ENST00000600840 KRTAP4-9Q9BYQ8 210 aa3.5□□□□□ -1.85
TRIM28-214ENST00000600840 KRTAP10-7P60409 375 aaPredicted RBP3.49□□□□□ -1.85
TRIM28-214ENST00000600840 KRTAP10-12P60413 245 aa3.47□□□□□ -1.85
TRIM28-214ENST00000600840 C10orf95Q9H7T3 257 aa3.47□□□□□ -1.85
TRIM28-214ENST00000600840 TNP1P09430 55 aa3.44□□□□□ -1.86
TRIM28-214ENST00000600840 DSTQ03001 7570 aaKnown RBP3.41□□□□□ -1.86
TRIM28-214ENST00000600840 KRTAP15-1Q3LI76 137 aa3.37□□□□□ -1.87
TRIM28-214ENST00000600840 LCE1DQ5T752 114 aa3.35□□□□□ -1.87
TRIM28-214ENST00000600840 KRTAP5-10Q6L8G5 202 aa3.3□□□□□ -1.88
TRIM28-214ENST00000600840 KRTAP19-7Q3SYF9 63 aa3.29□□□□□ -1.88
TRIM28-214ENST00000600840 MT4P47944 62 aa3.27□□□□□ -1.89
TRIM28-214ENST00000600840 LCE3AQ5TA76 89 aa3.25□□□□□ -1.89
TRIM28-214ENST00000600840 AHNAK2Q8IVF2 5795 aa3.25□□□□□ -1.89
TRIM28-214ENST00000600840 LUZP6Q538Z0 58 aa3.24□□□□□ -1.89
TRIM28-214ENST00000600840 LCE5AQ5TCM9 118 aa3.24□□□□□ -1.89
TRIM28-214ENST00000600840 HMCN1Q96RW7 5635 aa3.23□□□□□ -1.89
TRIM28-214ENST00000600840 MT1EP04732 61 aa3.22□□□□□ -1.89
TRIM28-214ENST00000600840 KRTAP5-7Q6L8G8 165 aa3.22□□□□□ -1.89
TRIM28-214ENST00000600840 KRTAP19-5Q3LI72 72 aa3.21□□□□□ -1.9
TRIM28-214ENST00000600840 NDUFAF8A1L188 74 aa3.2□□□□□ -1.9
TRIM28-214ENST00000600840 H3BS24 57 aa3.2□□□□□ -1.9
TRIM28-214ENST00000600840 KRTAP19-3Q7Z4W3 81 aa3.2□□□□□ -1.9
TRIM28-214ENST00000600840 SPRR5A0A1B0GTR4 108 aa3.17□□□□□ -1.9
TRIM28-214ENST00000600840 LCE4AQ5TA78 99 aa3.17□□□□□ -1.9
TRIM28-214ENST00000600840 KRTAP5-3Q6L8H2 238 aa3.14□□□□□ -1.91
TRIM28-214ENST00000600840 KRTAP4-6Q9BYQ5 205 aa3.13□□□□□ -1.91
TRIM28-214ENST00000600840 KRTAP12-3P60328 96 aa3.12□□□□□ -1.91
TRIM28-214ENST00000600840 MT1LQ93083 61 aa3.11□□□□□ -1.91
TRIM28-214ENST00000600840 MT1GP13640 62 aa3.1□□□□□ -1.91
TRIM28-214ENST00000600840 MT1MQ8N339 61 aa3.08□□□□□ -1.92
TRIM28-214ENST00000600840 KRTAP4-3Q9BYR4 195 aa3.07□□□□□ -1.92
TRIM28-214ENST00000600840 KRTAP5-4Q6L8H1 288 aa3.06□□□□□ -1.92
TRIM28-214ENST00000600840 KRTAP19-4Q3LI73 84 aa3.05□□□□□ -1.92
TRIM28-214ENST00000600840 A0A0A0MQY5 61 aa3.01□□□□□ -1.93
TRIM28-214ENST00000600840 KRTAP4-7Q9BYR0 210 aa2.99□□□□□ -1.93
TRIM28-214ENST00000600840 KRTAP20-2Q3LI61 65 aa2.93□□□□□ -1.94
TRIM28-214ENST00000600840 LCE3CQ5T5A8 94 aa2.92□□□□□ -1.94
TRIM28-214ENST00000600840 KRTAP5-5Q701N2 237 aaPredicted RBP2.84□□□□□ -1.95
TRIM28-214ENST00000600840 LOC100996750A0A140TA64 210 aa2.81□□□□□ -1.96
TRIM28-214ENST00000600840 KRTAP9-6A8MVA2 160 aa2.81□□□□□ -1.96
TRIM28-214ENST00000600840 INE1O15225 51 aa2.79□□□□□ -1.96
TRIM28-214ENST00000600840 SYNE1Q8NF91 8797 aaKnown RBP2.77□□□□□ -1.97
TRIM28-214ENST00000600840 MUC5ACP98088 5654 aa2.77□□□□□ -1.97
TRIM28-214ENST00000600840 KRTAP4-11Q9BYQ6 195 aa2.77□□□□□ -1.97
TRIM28-214ENST00000600840 AHNAKQ09666 5890 aaKnown RBP2.75□□□□□ -1.97
TRIM28-214ENST00000600840 KRTAP5-8O75690 187 aa2.74□□□□□ -1.97
TRIM28-214ENST00000600840 KRTAP12-4P60329 112 aa2.74□□□□□ -1.97
TRIM28-214ENST00000600840 MUC5BQ9HC84 5762 aaPredicted RBP2.66□□□□□ -1.98
TRIM28-214ENST00000600840 MT1AP04731 61 aa2.65□□□□□ -1.99
TRIM28-214ENST00000600840 KRTAP6-1Q3LI64 71 aa2.62□□□□□ -1.99
TRIM28-214ENST00000600840 KRTAP5-2Q701N4 177 aa2.61□□□□□ -1.99
TRIM28-214ENST00000600840 KRTAP9-9Q9BYP9 154 aa2.61□□□□□ -1.99
TRIM28-214ENST00000600840 KRTAP9-4Q9BYQ2 154 aa2.54□□□□□ -2
TRIM28-214ENST00000600840 KRTAP6-2Q3LI66 62 aa2.51□□□□□ -2.01
TRIM28-214ENST00000600840 OBSCNQ5VST9 7968 aa2.5□□□□□ -2.01
TRIM28-214ENST00000600840 KRTAP5-1Q6L8H4 278 aa2.43□□□□□ -2.02
TRIM28-214ENST00000600840 MT3P25713 68 aa2.39□□□□□ -2.03
TRIM28-214ENST00000600840 LCE3DQ9BYE3 92 aa2.21□□□□□ -2.06
TRIM28-214ENST00000600840 LCE3EQ5T5B0 92 aa2.19□□□□□ -2.06
TRIM28-214ENST00000600840 LCE1EQ5T753 118 aa2.18□□□□□ -2.06
TRIM28-214ENST00000600840 KRTAP4-2Q9BYR5 136 aa2.12□□□□□ -2.07
TRIM28-214ENST00000600840 LCE1BQ5T7P3 118 aa2.1□□□□□ -2.07
TRIM28-214ENST00000600840 KRTAP4-12Q9BQ66 201 aa2.1□□□□□ -2.07
TRIM28-214ENST00000600840 LCE1CQ5T751 118 aa2.03□□□□□ -2.08
TRIM28-214ENST00000600840 PHGR1C9JFL3 82 aa1.95□□□□□ -2.1
TRIM28-214ENST00000600840 PRM1P04553 51 aa1.95□□□□□ -2.1
TRIM28-214ENST00000600840 KRTAP5-11Q6L8G4 156 aa1.93□□□□□ -2.1
TRIM28-214ENST00000600840 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.88□□□□□ -2.11
TRIM28-214ENST00000600840 LCE1FQ5T754 118 aa1.85□□□□□ -2.11
TRIM28-214ENST00000600840 KRTAP21-2Q3LI59 83 aa1.75□□□□□ -2.13
TRIM28-214ENST00000600840 KRTAP4-4Q9BYR3 166 aa1.62□□□□□ -2.15
TRIM28-214ENST00000600840 MUC19Q7Z5P9 8384 aa1.55□□□□□ -2.16
TRIM28-214ENST00000600840 KRTAP21-1Q3LI58 79 aa1.45□□□□□ -2.18
TRIM28-214ENST00000600840 MUC16Q8WXI7 14507 aa1.14□□□□□ -2.23
Retrieved 78 of 20,778 RNA–protein pairs in 79.9 ms