RNA–Protein interactions for RNA: ENST00000600628.2

SSBP4-208, Transcript of single stranded DNA binding protein 4, humanhuman

TSL 3

Gene SSBP4, Length 550 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP4-208ENST00000600628 ROMO1P60602 79 aa3.33□□□□□ -1.88
SSBP4-208ENST00000600628 SPINT4Q6UDR6 99 aa3.31□□□□□ -1.88
SSBP4-208ENST00000600628 MT1EP04732 61 aa3.29□□□□□ -1.88
SSBP4-208ENST00000600628 KRTAP25-1Q3LHN0 102 aa3.29□□□□□ -1.88
SSBP4-208ENST00000600628 LCE3BQ5TA77 95 aa3.28□□□□□ -1.88
SSBP4-208ENST00000600628 LCE5AQ5TCM9 118 aa3.28□□□□□ -1.88
SSBP4-208ENST00000600628 C10orf95Q9H7T3 257 aa3.25□□□□□ -1.89
SSBP4-208ENST00000600628 DSTQ03001 7570 aaKnown RBP3.23□□□□□ -1.89
SSBP4-208ENST00000600628 KRTAP19-3Q7Z4W3 81 aa3.23□□□□□ -1.89
SSBP4-208ENST00000600628 KRTAP19-5Q3LI72 72 aa3.21□□□□□ -1.9
SSBP4-208ENST00000600628 MT1GP13640 62 aa3.17□□□□□ -1.9
SSBP4-208ENST00000600628 LCE3AQ5TA76 89 aa3.16□□□□□ -1.9
SSBP4-208ENST00000600628 TNP1P09430 55 aa3.15□□□□□ -1.91
SSBP4-208ENST00000600628 MT1LQ93083 61 aa3.15□□□□□ -1.91
SSBP4-208ENST00000600628 MT1MQ8N339 61 aa3.12□□□□□ -1.91
SSBP4-208ENST00000600628 PP632Q6XCG6 107 aa3.11□□□□□ -1.91
SSBP4-208ENST00000600628 KRTAP4-9Q9BYQ8 210 aa3.05□□□□□ -1.92
SSBP4-208ENST00000600628 GPR98Q8WXG9 6306 aa3.04□□□□□ -1.92
SSBP4-208ENST00000600628 KRTAP12-3P60328 96 aa3.04□□□□□ -1.92
SSBP4-208ENST00000600628 KRTAP4-3Q9BYR4 195 aa3.02□□□□□ -1.93
SSBP4-208ENST00000600628 KRTAP23-1A1A580 65 aa3□□□□□ -1.93
SSBP4-208ENST00000600628 KRTAP5-4Q6L8H1 288 aa3□□□□□ -1.93
SSBP4-208ENST00000600628 LCE4AQ5TA78 99 aa2.99□□□□□ -1.93
SSBP4-208ENST00000600628 HMCN1Q96RW7 5635 aa2.98□□□□□ -1.93
SSBP4-208ENST00000600628 LCE1DQ5T752 114 aa2.97□□□□□ -1.93
SSBP4-208ENST00000600628 KRTAP4-7Q9BYR0 210 aa2.96□□□□□ -1.94
SSBP4-208ENST00000600628 KRTAP19-4Q3LI73 84 aa2.95□□□□□ -1.94
SSBP4-208ENST00000600628 MT4P47944 62 aa2.94□□□□□ -1.94
SSBP4-208ENST00000600628 KRTAP15-1Q3LI76 137 aa2.94□□□□□ -1.94
SSBP4-208ENST00000600628 KRTAP5-5Q701N2 237 aaPredicted RBP2.92□□□□□ -1.94
SSBP4-208ENST00000600628 KRTAP4-6Q9BYQ5 205 aa2.87□□□□□ -1.95
SSBP4-208ENST00000600628 AHNAK2Q8IVF2 5795 aa2.85□□□□□ -1.95
SSBP4-208ENST00000600628 SYNE1Q8NF91 8797 aaKnown RBP2.83□□□□□ -1.96
SSBP4-208ENST00000600628 H3BS24 57 aa2.83□□□□□ -1.96
SSBP4-208ENST00000600628 LUZP6Q538Z0 58 aa2.82□□□□□ -1.96
SSBP4-208ENST00000600628 LCE3CQ5T5A8 94 aa2.82□□□□□ -1.96
SSBP4-208ENST00000600628 LOC100996750A0A140TA64 210 aa2.81□□□□□ -1.96
SSBP4-208ENST00000600628 NDUFAF8A1L188 74 aa2.81□□□□□ -1.96
SSBP4-208ENST00000600628 SPRR5A0A1B0GTR4 108 aa2.79□□□□□ -1.96
SSBP4-208ENST00000600628 KRTAP20-2Q3LI61 65 aa2.78□□□□□ -1.96
SSBP4-208ENST00000600628 KRTAP5-10Q6L8G5 202 aa2.76□□□□□ -1.97
SSBP4-208ENST00000600628 KRTAP12-4P60329 112 aa2.75□□□□□ -1.97
SSBP4-208ENST00000600628 KRTAP5-3Q6L8H2 238 aa2.74□□□□□ -1.97
SSBP4-208ENST00000600628 KRTAP9-6A8MVA2 160 aa2.72□□□□□ -1.97
SSBP4-208ENST00000600628 MT1AP04731 61 aa2.68□□□□□ -1.98
SSBP4-208ENST00000600628 KRTAP6-1Q3LI64 71 aa2.66□□□□□ -1.98
SSBP4-208ENST00000600628 KRTAP5-7Q6L8G8 165 aa2.66□□□□□ -1.98
SSBP4-208ENST00000600628 KRTAP5-2Q701N4 177 aa2.65□□□□□ -1.99
SSBP4-208ENST00000600628 A0A0A0MQY5 61 aa2.62□□□□□ -1.99
SSBP4-208ENST00000600628 KRTAP9-4Q9BYQ2 154 aa2.57□□□□□ -2
SSBP4-208ENST00000600628 KRTAP4-11Q9BYQ6 195 aa2.53□□□□□ -2
SSBP4-208ENST00000600628 KRTAP6-2Q3LI66 62 aa2.51□□□□□ -2.01
SSBP4-208ENST00000600628 OBSCNQ5VST9 7968 aa2.5□□□□□ -2.01
SSBP4-208ENST00000600628 KRTAP5-8O75690 187 aa2.46□□□□□ -2.02
SSBP4-208ENST00000600628 MT3P25713 68 aa2.42□□□□□ -2.02
SSBP4-208ENST00000600628 INE1O15225 51 aa2.41□□□□□ -2.02
SSBP4-208ENST00000600628 KRTAP5-1Q6L8H4 278 aa2.35□□□□□ -2.03
SSBP4-208ENST00000600628 MUC5ACP98088 5654 aa2.34□□□□□ -2.03
SSBP4-208ENST00000600628 MUC5BQ9HC84 5762 aaPredicted RBP2.34□□□□□ -2.04
SSBP4-208ENST00000600628 AHNAKQ09666 5890 aaKnown RBP2.31□□□□□ -2.04
SSBP4-208ENST00000600628 KRTAP9-9Q9BYP9 154 aa2.31□□□□□ -2.04
SSBP4-208ENST00000600628 LCE1EQ5T753 118 aa2.26□□□□□ -2.05
SSBP4-208ENST00000600628 KRTAP4-2Q9BYR5 136 aa2.14□□□□□ -2.07
SSBP4-208ENST00000600628 LCE1CQ5T751 118 aa2.1□□□□□ -2.07
SSBP4-208ENST00000600628 LCE1BQ5T7P3 118 aa2.1□□□□□ -2.07
SSBP4-208ENST00000600628 LCE3DQ9BYE3 92 aa2.02□□□□□ -2.09
SSBP4-208ENST00000600628 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.96□□□□□ -2.1
SSBP4-208ENST00000600628 LCE3EQ5T5B0 92 aa1.91□□□□□ -2.1
SSBP4-208ENST00000600628 KRTAP5-11Q6L8G4 156 aa1.91□□□□□ -2.1
SSBP4-208ENST00000600628 KRTAP4-12Q9BQ66 201 aa1.88□□□□□ -2.11
SSBP4-208ENST00000600628 LCE1FQ5T754 118 aa1.84□□□□□ -2.11
SSBP4-208ENST00000600628 KRTAP21-2Q3LI59 83 aa1.79□□□□□ -2.12
SSBP4-208ENST00000600628 PRM1P04553 51 aa1.72□□□□□ -2.13
SSBP4-208ENST00000600628 PHGR1C9JFL3 82 aa1.64□□□□□ -2.15
SSBP4-208ENST00000600628 KRTAP4-4Q9BYR3 166 aa1.57□□□□□ -2.16
SSBP4-208ENST00000600628 MUC19Q7Z5P9 8384 aa1.56□□□□□ -2.16
SSBP4-208ENST00000600628 KRTAP21-1Q3LI58 79 aa1.22□□□□□ -2.21
SSBP4-208ENST00000600628 MUC16Q8WXI7 14507 aa1.15□□□□□ -2.23
Retrieved 78 of 20,778 RNA–protein pairs in 14.4 ms