RNA–Protein interactions for RNA: ENST00000599322.5

LIG1-218, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 620 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-218ENST00000599322 KRTAP19-3Q7Z4W3 81 aa5.22□□□□□ -1.57
LIG1-218ENST00000599322 GPR98Q8WXG9 6306 aa5.21□□□□□ -1.57
LIG1-218ENST00000599322 DSTQ03001 7570 aaKnown RBP5.21□□□□□ -1.58
LIG1-218ENST00000599322 KRTAP19-5Q3LI72 72 aa5.19□□□□□ -1.58
LIG1-218ENST00000599322 LCE5AQ5TCM9 118 aa5.18□□□□□ -1.58
LIG1-218ENST00000599322 C10orf95Q9H7T3 257 aa5.18□□□□□ -1.58
LIG1-218ENST00000599322 K7ERS5 55 aa5.17□□□□□ -1.58
LIG1-218ENST00000599322 PP632Q6XCG6 107 aa5.17□□□□□ -1.58
LIG1-218ENST00000599322 PMAIP1Q13794 54 aa5.15□□□□□ -1.59
LIG1-218ENST00000599322 MT1GP13640 62 aa5.14□□□□□ -1.59
LIG1-218ENST00000599322 KRTAP4-9Q9BYQ8 210 aa5.14□□□□□ -1.59
LIG1-218ENST00000599322 LCE3AQ5TA76 89 aa5.11□□□□□ -1.59
LIG1-218ENST00000599322 KTN1-AS1Q86SY8 53 aa5.03□□□□□ -1.6
LIG1-218ENST00000599322 MT1LQ93083 61 aa5.02□□□□□ -1.61
LIG1-218ENST00000599322 KRTAP25-1Q3LHN0 102 aa5□□□□□ -1.61
LIG1-218ENST00000599322 MT1MQ8N339 61 aa4.99□□□□□ -1.61
LIG1-218ENST00000599322 LCE1DQ5T752 114 aa4.98□□□□□ -1.61
LIG1-218ENST00000599322 KRTAP12-3P60328 96 aa4.96□□□□□ -1.62
LIG1-218ENST00000599322 HMCN1Q96RW7 5635 aa4.89□□□□□ -1.63
LIG1-218ENST00000599322 MT4P47944 62 aa4.88□□□□□ -1.63
LIG1-218ENST00000599322 LCE4AQ5TA78 99 aa4.88□□□□□ -1.63
LIG1-218ENST00000599322 AHNAK2Q8IVF2 5795 aa4.84□□□□□ -1.63
LIG1-218ENST00000599322 ROMO1P60602 79 aa4.82□□□□□ -1.64
LIG1-218ENST00000599322 KRTAP4-3Q9BYR4 195 aa4.81□□□□□ -1.64
LIG1-218ENST00000599322 KRTAP23-1A1A580 65 aa4.8□□□□□ -1.64
LIG1-218ENST00000599322 KRTAP5-4Q6L8H1 288 aa4.78□□□□□ -1.64
LIG1-218ENST00000599322 KRTAP19-4Q3LI73 84 aa4.77□□□□□ -1.65
LIG1-218ENST00000599322 KRTAP5-10Q6L8G5 202 aa4.76□□□□□ -1.65
LIG1-218ENST00000599322 KRTAP4-6Q9BYQ5 205 aa4.74□□□□□ -1.65
LIG1-218ENST00000599322 KRTAP4-7Q9BYR0 210 aa4.73□□□□□ -1.65
LIG1-218ENST00000599322 PRAC1Q96KF2 57 aa4.72□□□□□ -1.65
LIG1-218ENST00000599322 KRTAP15-1Q3LI76 137 aa4.67□□□□□ -1.66
LIG1-218ENST00000599322 KRTAP5-7Q6L8G8 165 aa4.6□□□□□ -1.67
LIG1-218ENST00000599322 KRTAP5-3Q6L8H2 238 aa4.59□□□□□ -1.67
LIG1-218ENST00000599322 LCE3CQ5T5A8 94 aa4.56□□□□□ -1.68
LIG1-218ENST00000599322 KRTAP12-4P60329 112 aa4.54□□□□□ -1.68
LIG1-218ENST00000599322 KRTAP20-2Q3LI61 65 aa4.52□□□□□ -1.69
LIG1-218ENST00000599322 KRTAP5-5Q701N2 237 aaPredicted RBP4.51□□□□□ -1.69
LIG1-218ENST00000599322 LOC100996750A0A140TA64 210 aa4.48□□□□□ -1.69
LIG1-218ENST00000599322 SPRR5A0A1B0GTR4 108 aa4.47□□□□□ -1.69
LIG1-218ENST00000599322 SYNE1Q8NF91 8797 aaKnown RBP4.38□□□□□ -1.71
LIG1-218ENST00000599322 MT1AP04731 61 aa4.3□□□□□ -1.72
LIG1-218ENST00000599322 KRTAP6-1Q3LI64 71 aa4.22□□□□□ -1.73
LIG1-218ENST00000599322 KRTAP9-6A8MVA2 160 aa4.18□□□□□ -1.74
LIG1-218ENST00000599322 KRTAP4-11Q9BYQ6 195 aa4.17□□□□□ -1.74
LIG1-218ENST00000599322 KRTAP5-2Q701N4 177 aa4.15□□□□□ -1.75
LIG1-218ENST00000599322 KRTAP9-4Q9BYQ2 154 aa4.15□□□□□ -1.75
LIG1-218ENST00000599322 KRTAP5-8O75690 187 aa4.06□□□□□ -1.76
LIG1-218ENST00000599322 KRTAP6-2Q3LI66 62 aa4.05□□□□□ -1.76
LIG1-218ENST00000599322 MUC5ACP98088 5654 aa4□□□□□ -1.77
LIG1-218ENST00000599322 AHNAKQ09666 5890 aaKnown RBP4□□□□□ -1.77
LIG1-218ENST00000599322 MT3P25713 68 aa3.98□□□□□ -1.77
LIG1-218ENST00000599322 MUC5BQ9HC84 5762 aaPredicted RBP3.96□□□□□ -1.78
LIG1-218ENST00000599322 OBSCNQ5VST9 7968 aa3.95□□□□□ -1.78
LIG1-218ENST00000599322 LUZP6Q538Z0 58 aa3.91□□□□□ -1.78
LIG1-218ENST00000599322 NDUFAF8A1L188 74 aa3.86□□□□□ -1.79
LIG1-218ENST00000599322 KRTAP9-9Q9BYP9 154 aa3.86□□□□□ -1.79
LIG1-218ENST00000599322 KRTAP5-1Q6L8H4 278 aa3.77□□□□□ -1.81
LIG1-218ENST00000599322 H3BS24 57 aa3.62□□□□□ -1.83
LIG1-218ENST00000599322 LCE1EQ5T753 118 aa3.61□□□□□ -1.83
LIG1-218ENST00000599322 A0A0A0MQY5 61 aa3.5□□□□□ -1.85
LIG1-218ENST00000599322 LCE1BQ5T7P3 118 aa3.42□□□□□ -1.86
LIG1-218ENST00000599322 KRTAP4-2Q9BYR5 136 aa3.35□□□□□ -1.87
LIG1-218ENST00000599322 LCE3DQ9BYE3 92 aa3.34□□□□□ -1.87
LIG1-218ENST00000599322 LCE1CQ5T751 118 aa3.33□□□□□ -1.88
LIG1-218ENST00000599322 INE1O15225 51 aa3.32□□□□□ -1.88
LIG1-218ENST00000599322 LCE3EQ5T5B0 92 aa3.16□□□□□ -1.9
LIG1-218ENST00000599322 KRTAP4-12Q9BQ66 201 aa3.12□□□□□ -1.91
LIG1-218ENST00000599322 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.01□□□□□ -1.93
LIG1-218ENST00000599322 KRTAP5-11Q6L8G4 156 aa3□□□□□ -1.93
LIG1-218ENST00000599322 LCE1FQ5T754 118 aa2.96□□□□□ -1.94
LIG1-218ENST00000599322 PHGR1C9JFL3 82 aa2.77□□□□□ -1.97
LIG1-218ENST00000599322 KRTAP21-2Q3LI59 83 aa2.76□□□□□ -1.97
LIG1-218ENST00000599322 KRTAP4-4Q9BYR3 166 aa2.54□□□□□ -2
LIG1-218ENST00000599322 PRM1P04553 51 aa2.48□□□□□ -2.01
LIG1-218ENST00000599322 MUC19Q7Z5P9 8384 aa2.46□□□□□ -2.02
LIG1-218ENST00000599322 KRTAP21-1Q3LI58 79 aa2.09□□□□□ -2.07
LIG1-218ENST00000599322 MUC16Q8WXI7 14507 aa1.74□□□□□ -2.13
Retrieved 78 of 20,778 RNA–protein pairs in 13.2 ms