RNA–Protein interactions for RNA: ENST00000599223.5

IRF3-223, Transcript of interferon regulatory factor 3, human

TSL 1 (best) BASIC

Gene IRF3, Length 1,055 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
IRF3-223	ENST00000599223	KTN1-AS1	Q86SY8	53 aa		5.65	□□□□□ -1.5
IRF3-223	ENST00000599223	KRTAP19-7	Q3SYF9	63 aa		5.55	□□□□□ -1.52
IRF3-223	ENST00000599223	LCE5A	Q5TCM9	118 aa		5.55	□□□□□ -1.52
IRF3-223	ENST00000599223	KRTAP4-9	Q9BYQ8	210 aa		5.54	□□□□□ -1.52
IRF3-223	ENST00000599223	MT1E	P04732	61 aa		5.51	□□□□□ -1.53
IRF3-223	ENST00000599223	C10orf95	Q9H7T3	257 aa		5.5	□□□□□ -1.53
IRF3-223	ENST00000599223	KRTAP19-3	Q7Z4W3	81 aa		5.49	□□□□□ -1.53
IRF3-223	ENST00000599223	KRTAP25-1	Q3LHN0	102 aa		5.48	□□□□□ -1.53
IRF3-223	ENST00000599223	SVIP	Q8NHG7	77 aa		5.48	□□□□□ -1.53
IRF3-223	ENST00000599223	TNP1	P09430	55 aa		5.47	□□□□□ -1.53
IRF3-223	ENST00000599223	PRAC1	Q96KF2	57 aa		5.44	□□□□□ -1.54
IRF3-223	ENST00000599223	LCE1D	Q5T752	114 aa		5.38	□□□□□ -1.55
IRF3-223	ENST00000599223	HMCN1	Q96RW7	5635 aa		5.34	□□□□□ -1.56
IRF3-223	ENST00000599223	KRTAP19-5	Q3LI72	72 aa		5.33	□□□□□ -1.56
IRF3-223	ENST00000599223	PP632	Q6XCG6	107 aa		5.33	□□□□□ -1.56
IRF3-223	ENST00000599223	MT1G	P13640	62 aa		5.29	□□□□□ -1.56
IRF3-223	ENST00000599223	KRTAP23-1	A1A580	65 aa		5.28	□□□□□ -1.56
IRF3-223	ENST00000599223	MT4	P47944	62 aa		5.28	□□□□□ -1.56
IRF3-223	ENST00000599223	AHNAK2	Q8IVF2	5795 aa		5.27	□□□□□ -1.57
IRF3-223	ENST00000599223	MT1M	Q8N339	61 aa		5.26	□□□□□ -1.57
IRF3-223	ENST00000599223	LCE4A	Q5TA78	99 aa		5.24	□□□□□ -1.57
IRF3-223	ENST00000599223	MT1L	Q93083	61 aa		5.21	□□□□□ -1.58
IRF3-223	ENST00000599223	KRTAP4-3	Q9BYR4	195 aa		5.2	□□□□□ -1.58
IRF3-223	ENST00000599223	KRTAP5-4	Q6L8H1	288 aa		5.16	□□□□□ -1.58
IRF3-223	ENST00000599223	LCE3A	Q5TA76	89 aa		5.13	□□□□□ -1.59
IRF3-223	ENST00000599223	KRTAP5-10	Q6L8G5	202 aa		5.13	□□□□□ -1.59
IRF3-223	ENST00000599223	KRTAP4-6	Q9BYQ5	205 aa		5.12	□□□□□ -1.59
IRF3-223	ENST00000599223	KRTAP4-7	Q9BYR0	210 aa		4.99	□□□□□ -1.61
IRF3-223	ENST00000599223	KRTAP12-3	P60328	96 aa		4.97	□□□□□ -1.61
IRF3-223	ENST00000599223	KRTAP5-7	Q6L8G8	165 aa		4.94	□□□□□ -1.62
IRF3-223	ENST00000599223	KRTAP5-3	Q6L8H2	238 aa		4.94	□□□□□ -1.62
IRF3-223	ENST00000599223	KRTAP20-2	Q3LI61	65 aa		4.89	□□□□□ -1.63
IRF3-223	ENST00000599223	KRTAP15-1	Q3LI76	137 aa		4.87	□□□□□ -1.63
IRF3-223	ENST00000599223	KRTAP5-5	Q701N2	237 aa	Predicted RBP	4.87	□□□□□ -1.63
IRF3-223	ENST00000599223	SPRR5	A0A1B0GTR4	108 aa		4.79	□□□□□ -1.64
IRF3-223	ENST00000599223	KRTAP19-4	Q3LI73	84 aa		4.75	□□□□□ -1.65
IRF3-223	ENST00000599223	LOC100996750	A0A140TA64	210 aa		4.74	□□□□□ -1.65
IRF3-223	ENST00000599223	SYNE1	Q8NF91	8797 aa	Known RBP	4.74	□□□□□ -1.65
IRF3-223	ENST00000599223	KRTAP12-4	P60329	112 aa		4.7	□□□□□ -1.66
IRF3-223	ENST00000599223	LCE3C	Q5T5A8	94 aa		4.63	□□□□□ -1.67
IRF3-223	ENST00000599223	LUZP6	Q538Z0	58 aa		4.62	□□□□□ -1.67
IRF3-223	ENST00000599223	KRTAP4-11	Q9BYQ6	195 aa		4.5	□□□□□ -1.69
IRF3-223	ENST00000599223	KRTAP5-2	Q701N4	177 aa		4.49	□□□□□ -1.69
IRF3-223	ENST00000599223	KRTAP6-1	Q3LI64	71 aa		4.44	□□□□□ -1.7
IRF3-223	ENST00000599223	MT1A	P04731	61 aa		4.42	□□□□□ -1.7
IRF3-223	ENST00000599223	KRTAP5-8	O75690	187 aa		4.39	□□□□□ -1.71
IRF3-223	ENST00000599223	AHNAK	Q09666	5890 aa	Known RBP	4.38	□□□□□ -1.71
IRF3-223	ENST00000599223	NDUFAF8	A1L188	74 aa		4.37	□□□□□ -1.71
IRF3-223	ENST00000599223	MUC5AC	P98088	5654 aa		4.37	□□□□□ -1.71
IRF3-223	ENST00000599223	MUC5B	Q9HC84	5762 aa	Predicted RBP	4.33	□□□□□ -1.72
IRF3-223	ENST00000599223	KRTAP9-6	A8MVA2	160 aa		4.29	□□□□□ -1.72
IRF3-223	ENST00000599223	KRTAP6-2	Q3LI66	62 aa		4.28	□□□□□ -1.72
IRF3-223	ENST00000599223	OBSCN	Q5VST9	7968 aa		4.27	□□□□□ -1.73
IRF3-223	ENST00000599223	KRTAP9-4	Q9BYQ2	154 aa		4.27	□□□□□ -1.73
IRF3-223	ENST00000599223	KRTAP9-9	Q9BYP9	154 aa		4.14	□□□□□ -1.75
IRF3-223	ENST00000599223	KRTAP5-1	Q6L8H4	278 aa		4.07	□□□□□ -1.76
IRF3-223	ENST00000599223	MT3	P25713	68 aa		4	□□□□□ -1.77
IRF3-223	ENST00000599223		A0A0A0MQY5	61 aa		3.96	□□□□□ -1.78
IRF3-223	ENST00000599223		H3BS24	57 aa		3.81	□□□□□ -1.8
IRF3-223	ENST00000599223	LCE1E	Q5T753	118 aa		3.74	□□□□□ -1.81
IRF3-223	ENST00000599223	INE1	O15225	51 aa		3.68	□□□□□ -1.82
IRF3-223	ENST00000599223	KRTAP4-2	Q9BYR5	136 aa		3.64	□□□□□ -1.83
IRF3-223	ENST00000599223	LCE1B	Q5T7P3	118 aa		3.58	□□□□□ -1.84
IRF3-223	ENST00000599223	LCE3D	Q9BYE3	92 aa		3.5	□□□□□ -1.85
IRF3-223	ENST00000599223	LCE1C	Q5T751	118 aa		3.49	□□□□□ -1.85
IRF3-223	ENST00000599223	LCE3E	Q5T5B0	92 aa		3.4	□□□□□ -1.87
IRF3-223	ENST00000599223	KRTAP4-12	Q9BQ66	201 aa		3.38	□□□□□ -1.87
IRF3-223	ENST00000599223	KRTAP5-11	Q6L8G4	156 aa		3.21	□□□□□ -1.9
IRF3-223	ENST00000599223	KRTAP5-6	Q6L8G9	129 aa	Predicted RBP	3.16	□□□□□ -1.9
IRF3-223	ENST00000599223	LCE1F	Q5T754	118 aa		3.12	□□□□□ -1.91
IRF3-223	ENST00000599223	PHGR1	C9JFL3	82 aa		2.98	□□□□□ -1.93
IRF3-223	ENST00000599223	PRM1	P04553	51 aa		2.93	□□□□□ -1.94
IRF3-223	ENST00000599223	KRTAP21-2	Q3LI59	83 aa		2.93	□□□□□ -1.94
IRF3-223	ENST00000599223	KRTAP4-4	Q9BYR3	166 aa		2.74	□□□□□ -1.97
IRF3-223	ENST00000599223	MUC19	Q7Z5P9	8384 aa		2.67	□□□□□ -1.98
IRF3-223	ENST00000599223	KRTAP21-1	Q3LI58	79 aa		2.23	□□□□□ -2.05
IRF3-223	ENST00000599223	MUC16	Q8WXI7	14507 aa		1.9	□□□□□ -2.11

Retrieved 77 of 20,778 RNA–protein pairs in 11.9 ms