RNA–Protein interactions for RNA: ENST00000598938.1

LIG1-216, Transcript of DNA ligase 1, humanhuman

TSL 3

Gene LIG1, Length 377 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-216ENST00000598938 MT1EP04732 61 aa6.73□□□□□ -1.33
LIG1-216ENST00000598938 KRTAP25-1Q3LHN0 102 aa6.73□□□□□ -1.33
LIG1-216ENST00000598938 KRTAP19-5Q3LI72 72 aa6.73□□□□□ -1.33
LIG1-216ENST00000598938 DSTQ03001 7570 aaKnown RBP6.73□□□□□ -1.33
LIG1-216ENST00000598938 ROMO1P60602 79 aa6.59□□□□□ -1.35
LIG1-216ENST00000598938 KRTAP19-3Q7Z4W3 81 aa6.59□□□□□ -1.35
LIG1-216ENST00000598938 KRTAP4-9Q9BYQ8 210 aa6.59□□□□□ -1.35
LIG1-216ENST00000598938 LCE5AQ5TCM9 118 aa6.56□□□□□ -1.36
LIG1-216ENST00000598938 KRTAP23-1A1A580 65 aa6.52□□□□□ -1.37
LIG1-216ENST00000598938 KRTAP12-3P60328 96 aa6.51□□□□□ -1.37
LIG1-216ENST00000598938 MT1LQ93083 61 aa6.5□□□□□ -1.37
LIG1-216ENST00000598938 MT1GP13640 62 aa6.48□□□□□ -1.37
LIG1-216ENST00000598938 BRK1Q8WUW1 75 aa6.47□□□□□ -1.37
LIG1-216ENST00000598938 LCE1DQ5T752 114 aa6.43□□□□□ -1.38
LIG1-216ENST00000598938 PP632Q6XCG6 107 aa6.4□□□□□ -1.38
LIG1-216ENST00000598938 MT1MQ8N339 61 aa6.38□□□□□ -1.39
LIG1-216ENST00000598938 LCE4AQ5TA78 99 aa6.34□□□□□ -1.39
LIG1-216ENST00000598938 HMCN1Q96RW7 5635 aa6.33□□□□□ -1.4
LIG1-216ENST00000598938 AHNAK2Q8IVF2 5795 aa6.27□□□□□ -1.41
LIG1-216ENST00000598938 MT4P47944 62 aa6.25□□□□□ -1.41
LIG1-216ENST00000598938 KRTAP5-10Q6L8G5 202 aa6.25□□□□□ -1.41
LIG1-216ENST00000598938 KRTAP15-1Q3LI76 137 aa6.22□□□□□ -1.41
LIG1-216ENST00000598938 KRTAP4-3Q9BYR4 195 aa6.2□□□□□ -1.42
LIG1-216ENST00000598938 KRTAP4-7Q9BYR0 210 aa6.19□□□□□ -1.42
LIG1-216ENST00000598938 KRTAP19-4Q3LI73 84 aa6.18□□□□□ -1.42
LIG1-216ENST00000598938 KRTAP5-4Q6L8H1 288 aa6.13□□□□□ -1.43
LIG1-216ENST00000598938 PMAIP1Q13794 54 aa6.1□□□□□ -1.43
LIG1-216ENST00000598938 KRTAP5-7Q6L8G8 165 aa6.1□□□□□ -1.43
LIG1-216ENST00000598938 LCE3CQ5T5A8 94 aa6.04□□□□□ -1.44
LIG1-216ENST00000598938 KRTAP4-6Q9BYQ5 205 aa6.03□□□□□ -1.44
LIG1-216ENST00000598938 PRO0628Q9UI54 55 aa6□□□□□ -1.45
LIG1-216ENST00000598938 KRTAP5-3Q6L8H2 238 aa5.99□□□□□ -1.45
LIG1-216ENST00000598938 SPRR5A0A1B0GTR4 108 aa5.87□□□□□ -1.47
LIG1-216ENST00000598938 LOC100996750A0A140TA64 210 aa5.84□□□□□ -1.47
LIG1-216ENST00000598938 KRTAP5-5Q701N2 237 aaPredicted RBP5.83□□□□□ -1.48
LIG1-216ENST00000598938 PRAC1Q96KF2 57 aa5.8□□□□□ -1.48
LIG1-216ENST00000598938 KRTAP20-2Q3LI61 65 aa5.79□□□□□ -1.48
LIG1-216ENST00000598938 KRTAP9-6A8MVA2 160 aa5.7□□□□□ -1.5
LIG1-216ENST00000598938 KTN1-AS1Q86SY8 53 aa5.65□□□□□ -1.5
LIG1-216ENST00000598938 KRTAP12-4P60329 112 aa5.63□□□□□ -1.51
LIG1-216ENST00000598938 SYNE1Q8NF91 8797 aaKnown RBP5.61□□□□□ -1.51
LIG1-216ENST00000598938 MT1AP04731 61 aa5.53□□□□□ -1.52
LIG1-216ENST00000598938 KRTAP6-1Q3LI64 71 aa5.47□□□□□ -1.53
LIG1-216ENST00000598938 AHNAKQ09666 5890 aaKnown RBP5.44□□□□□ -1.54
LIG1-216ENST00000598938 KRTAP4-11Q9BYQ6 195 aa5.41□□□□□ -1.54
LIG1-216ENST00000598938 SVIPQ8NHG7 77 aa5.33□□□□□ -1.56
LIG1-216ENST00000598938 MUC5ACP98088 5654 aa5.32□□□□□ -1.56
LIG1-216ENST00000598938 KRTAP9-4Q9BYQ2 154 aa5.3□□□□□ -1.56
LIG1-216ENST00000598938 MUC5BQ9HC84 5762 aaPredicted RBP5.29□□□□□ -1.56
LIG1-216ENST00000598938 KRTAP5-2Q701N4 177 aa5.28□□□□□ -1.56
LIG1-216ENST00000598938 KRTAP5-8O75690 187 aa5.24□□□□□ -1.57
LIG1-216ENST00000598938 KRTAP6-2Q3LI66 62 aa5.15□□□□□ -1.59
LIG1-216ENST00000598938 KRTAP9-9Q9BYP9 154 aa5.07□□□□□ -1.6
LIG1-216ENST00000598938 MT3P25713 68 aa5.04□□□□□ -1.6
LIG1-216ENST00000598938 OBSCNQ5VST9 7968 aa5.03□□□□□ -1.6
LIG1-216ENST00000598938 KRTAP5-1Q6L8H4 278 aa4.81□□□□□ -1.64
LIG1-216ENST00000598938 LUZP6Q538Z0 58 aa4.8□□□□□ -1.64
LIG1-216ENST00000598938 LCE1EQ5T753 118 aa4.54□□□□□ -1.68
LIG1-216ENST00000598938 LCE3DQ9BYE3 92 aa4.42□□□□□ -1.7
LIG1-216ENST00000598938 KRTAP4-2Q9BYR5 136 aa4.26□□□□□ -1.73
LIG1-216ENST00000598938 NDUFAF8A1L188 74 aa4.24□□□□□ -1.73
LIG1-216ENST00000598938 LCE3EQ5T5B0 92 aa4.22□□□□□ -1.73
LIG1-216ENST00000598938 LCE1CQ5T751 118 aa4.22□□□□□ -1.73
LIG1-216ENST00000598938 LCE1BQ5T7P3 118 aa4.22□□□□□ -1.73
LIG1-216ENST00000598938 KRTAP4-12Q9BQ66 201 aa3.93□□□□□ -1.78
LIG1-216ENST00000598938 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.9□□□□□ -1.79
LIG1-216ENST00000598938 KRTAP5-11Q6L8G4 156 aa3.85□□□□□ -1.79
LIG1-216ENST00000598938 LCE1FQ5T754 118 aa3.84□□□□□ -1.79
LIG1-216ENST00000598938 PHGR1C9JFL3 82 aa3.65□□□□□ -1.83
LIG1-216ENST00000598938 KRTAP21-2Q3LI59 83 aa3.61□□□□□ -1.83
LIG1-216ENST00000598938 A0A0A0MQY5 61 aa3.53□□□□□ -1.84
LIG1-216ENST00000598938 INE1O15225 51 aa3.48□□□□□ -1.85
LIG1-216ENST00000598938 PRM1P04553 51 aa3.39□□□□□ -1.87
LIG1-216ENST00000598938 KRTAP4-4Q9BYR3 166 aa3.22□□□□□ -1.89
LIG1-216ENST00000598938 MUC19Q7Z5P9 8384 aa3.11□□□□□ -1.91
LIG1-216ENST00000598938 KRTAP21-1Q3LI58 79 aa2.82□□□□□ -1.96
LIG1-216ENST00000598938 H3BS24 57 aa2.52□□□□□ -2.01
LIG1-216ENST00000598938 MUC16Q8WXI7 14507 aa2.18□□□□□ -2.06
Retrieved 78 of 20,778 RNA–protein pairs in 11.7 ms