RNA–Protein interactions for RNA: ENST00000594806.5

TRIM28-204, Transcript of tripartite motif containing 28, humanhuman

TSL 5

Gene TRIM28, Length 861 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-204ENST00000594806 KRTAP2-2Q9BYT5 123 aa9.32□□□□□ -0.92
TRIM28-204ENST00000594806 KRTAP2-1Q9BYU5 128 aa9.32□□□□□ -0.92
TRIM28-204ENST00000594806 CDC42SE1Q9NRR8 79 aa9.3□□□□□ -0.92
TRIM28-204ENST00000594806 MT1GP13640 62 aa9.28□□□□□ -0.92
TRIM28-204ENST00000594806 LCE3BQ5TA77 95 aa9.28□□□□□ -0.92
TRIM28-204ENST00000594806 PP632Q6XCG6 107 aa9.22□□□□□ -0.93
TRIM28-204ENST00000594806 MT1LQ93083 61 aa9.2□□□□□ -0.94
TRIM28-204ENST00000594806 KRTAP12-3P60328 96 aa9.17□□□□□ -0.94
TRIM28-204ENST00000594806 KRTAP23-1A1A580 65 aa9.16□□□□□ -0.94
TRIM28-204ENST00000594806 ROMO1P60602 79 aa9.08□□□□□ -0.96
TRIM28-204ENST00000594806 MT1MQ8N339 61 aa9.06□□□□□ -0.96
TRIM28-204ENST00000594806 DSTQ03001 7570 aaKnown RBP8.92□□□□□ -0.98
TRIM28-204ENST00000594806 KRTAP19-4Q3LI73 84 aa8.85□□□□□ -0.99
TRIM28-204ENST00000594806 KRTAP4-3Q9BYR4 195 aa8.75□□□□□ -1.01
TRIM28-204ENST00000594806 KRTAP15-1Q3LI76 137 aa8.73□□□□□ -1.01
TRIM28-204ENST00000594806 BRK1Q8WUW1 75 aa8.69□□□□□ -1.02
TRIM28-204ENST00000594806 KRTAP4-7Q9BYR0 210 aa8.68□□□□□ -1.02
TRIM28-204ENST00000594806 LCE4AQ5TA78 99 aa8.54□□□□□ -1.04
TRIM28-204ENST00000594806 LCE3CQ5T5A8 94 aa8.49□□□□□ -1.05
TRIM28-204ENST00000594806 KRTAP4-9Q9BYQ8 210 aa8.45□□□□□ -1.06
TRIM28-204ENST00000594806 KRTAP5-4Q6L8H1 288 aa8.43□□□□□ -1.06
TRIM28-204ENST00000594806 LCE1DQ5T752 114 aa8.35□□□□□ -1.07
TRIM28-204ENST00000594806 MT4P47944 62 aa8.29□□□□□ -1.08
TRIM28-204ENST00000594806 KRTAP5-5Q701N2 237 aaPredicted RBP8.27□□□□□ -1.09
TRIM28-204ENST00000594806 PMAIP1Q13794 54 aa8.23□□□□□ -1.09
TRIM28-204ENST00000594806 LOC100996750A0A140TA64 210 aa8.21□□□□□ -1.1
TRIM28-204ENST00000594806 KRTAP4-6Q9BYQ5 205 aa8.1□□□□□ -1.11
TRIM28-204ENST00000594806 HMCN1Q96RW7 5635 aa8.09□□□□□ -1.11
TRIM28-204ENST00000594806 KRTAP12-4P60329 112 aa8.02□□□□□ -1.13
TRIM28-204ENST00000594806 SPRR5A0A1B0GTR4 108 aa7.98□□□□□ -1.13
TRIM28-204ENST00000594806 PRO0628Q9UI54 55 aa7.95□□□□□ -1.14
TRIM28-204ENST00000594806 KRTAP9-6A8MVA2 160 aa7.92□□□□□ -1.14
TRIM28-204ENST00000594806 KRTAP20-2Q3LI61 65 aa7.9□□□□□ -1.14
TRIM28-204ENST00000594806 MT1AP04731 61 aa7.86□□□□□ -1.15
TRIM28-204ENST00000594806 SYNE1Q8NF91 8797 aaKnown RBP7.82□□□□□ -1.16
TRIM28-204ENST00000594806 GPR98Q8WXG9 6306 aa7.81□□□□□ -1.16
TRIM28-204ENST00000594806 PRAC1Q96KF2 57 aa7.74□□□□□ -1.17
TRIM28-204ENST00000594806 KRTAP6-1Q3LI64 71 aa7.73□□□□□ -1.17
TRIM28-204ENST00000594806 KRTAP5-3Q6L8H2 238 aa7.66□□□□□ -1.18
TRIM28-204ENST00000594806 AHNAK2Q8IVF2 5795 aa7.65□□□□□ -1.18
TRIM28-204ENST00000594806 KRTAP5-10Q6L8G5 202 aa7.57□□□□□ -1.2
TRIM28-204ENST00000594806 KRTAP9-4Q9BYQ2 154 aa7.55□□□□□ -1.2
TRIM28-204ENST00000594806 KTN1-AS1Q86SY8 53 aa7.52□□□□□ -1.21
TRIM28-204ENST00000594806 KRTAP5-2Q701N4 177 aa7.46□□□□□ -1.22
TRIM28-204ENST00000594806 KRTAP6-2Q3LI66 62 aa7.31□□□□□ -1.24
TRIM28-204ENST00000594806 KRTAP5-7Q6L8G8 165 aa7.24□□□□□ -1.25
TRIM28-204ENST00000594806 MT3P25713 68 aa7.19□□□□□ -1.26
TRIM28-204ENST00000594806 KRTAP4-11Q9BYQ6 195 aa7.13□□□□□ -1.27
TRIM28-204ENST00000594806 SVIPQ8NHG7 77 aa7.11□□□□□ -1.27
TRIM28-204ENST00000594806 KRTAP5-8O75690 187 aa6.87□□□□□ -1.31
TRIM28-204ENST00000594806 OBSCNQ5VST9 7968 aa6.75□□□□□ -1.33
TRIM28-204ENST00000594806 LUZP6Q538Z0 58 aa6.62□□□□□ -1.35
TRIM28-204ENST00000594806 KRTAP5-1Q6L8H4 278 aa6.59□□□□□ -1.35
TRIM28-204ENST00000594806 LCE1EQ5T753 118 aa6.54□□□□□ -1.36
TRIM28-204ENST00000594806 KRTAP9-9Q9BYP9 154 aa6.48□□□□□ -1.37
TRIM28-204ENST00000594806 MUC5ACP98088 5654 aa6.34□□□□□ -1.39
TRIM28-204ENST00000594806 MUC5BQ9HC84 5762 aaPredicted RBP6.22□□□□□ -1.41
TRIM28-204ENST00000594806 LCE3DQ9BYE3 92 aa6.21□□□□□ -1.42
TRIM28-204ENST00000594806 AHNAKQ09666 5890 aaKnown RBP6.14□□□□□ -1.43
TRIM28-204ENST00000594806 KRTAP4-2Q9BYR5 136 aa6.06□□□□□ -1.44
TRIM28-204ENST00000594806 LCE1CQ5T751 118 aa6.05□□□□□ -1.44
TRIM28-204ENST00000594806 LCE1BQ5T7P3 118 aa6.05□□□□□ -1.44
TRIM28-204ENST00000594806 LCE3EQ5T5B0 92 aa5.92□□□□□ -1.46
TRIM28-204ENST00000594806 NDUFAF8A1L188 74 aa5.57□□□□□ -1.52
TRIM28-204ENST00000594806 KRTAP5-6Q6L8G9 129 aaPredicted RBP5.57□□□□□ -1.52
TRIM28-204ENST00000594806 KRTAP5-11Q6L8G4 156 aa5.43□□□□□ -1.54
TRIM28-204ENST00000594806 KRTAP4-12Q9BQ66 201 aa5.28□□□□□ -1.56
TRIM28-204ENST00000594806 LCE1FQ5T754 118 aa5.24□□□□□ -1.57
TRIM28-204ENST00000594806 KRTAP21-2Q3LI59 83 aa5.11□□□□□ -1.59
TRIM28-204ENST00000594806 A0A0A0MQY5 61 aa4.68□□□□□ -1.66
TRIM28-204ENST00000594806 PHGR1C9JFL3 82 aa4.66□□□□□ -1.66
TRIM28-204ENST00000594806 INE1O15225 51 aa4.65□□□□□ -1.67
TRIM28-204ENST00000594806 PRM1P04553 51 aa4.63□□□□□ -1.67
TRIM28-204ENST00000594806 KRTAP4-4Q9BYR3 166 aa4.54□□□□□ -1.68
TRIM28-204ENST00000594806 MUC19Q7Z5P9 8384 aa4.15□□□□□ -1.75
TRIM28-204ENST00000594806 KRTAP21-1Q3LI58 79 aa3.36□□□□□ -1.87
TRIM28-204ENST00000594806 MUC16Q8WXI7 14507 aa3.04□□□□□ -1.92
TRIM28-204ENST00000594806 H3BS24 57 aa2.91□□□□□ -1.94
Retrieved 78 of 20,778 RNA–protein pairs in 10.3 ms