RNA–Protein interactions for RNA: ENST00000590559.2

CLIP3-204, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

TSL 4

Gene CLIP3, Length 549 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-204ENST00000590559 KRTAP5-10Q6L8G5 202 aa4.15□□□□□ -1.75
CLIP3-204ENST00000590559 KRTAP12-1P59990 96 aa4.11□□□□□ -1.75
CLIP3-204ENST00000590559 SPATA8Q6RVD6 105 aa4.1□□□□□ -1.75
CLIP3-204ENST00000590559 COA5Q86WW8 74 aa4.1□□□□□ -1.75
CLIP3-204ENST00000590559 BRK1Q8WUW1 75 aa4.1□□□□□ -1.75
CLIP3-204ENST00000590559 KRTAP4-6Q9BYQ5 205 aa4.1□□□□□ -1.75
CLIP3-204ENST00000590559 KRTAP4-3Q9BYR4 195 aa4.1□□□□□ -1.75
CLIP3-204ENST00000590559 LINC01558Q9Y6Z2 57 aa4.08□□□□□ -1.76
CLIP3-204ENST00000590559 SPINT4Q6UDR6 99 aa4.07□□□□□ -1.76
CLIP3-204ENST00000590559 PSPHP1O15172 72 aa4.04□□□□□ -1.76
CLIP3-204ENST00000590559 A0A1B0GU33 70 aa4.03□□□□□ -1.76
CLIP3-204ENST00000590559 C10orf95Q9H7T3 257 aa4.03□□□□□ -1.76
CLIP3-204ENST00000590559 LCE3AQ5TA76 89 aa4.02□□□□□ -1.77
CLIP3-204ENST00000590559 PRR15LQ9BU68 103 aa4.02□□□□□ -1.77
CLIP3-204ENST00000590559 KRTAP5-7Q6L8G8 165 aa4.01□□□□□ -1.77
CLIP3-204ENST00000590559 CDC42SE1Q9NRR8 79 aa3.99□□□□□ -1.77
CLIP3-204ENST00000590559 KRTAP5-3Q6L8H2 238 aa3.98□□□□□ -1.77
CLIP3-204ENST00000590559 A6NED7 52 aa3.96□□□□□ -1.78
CLIP3-204ENST00000590559 KRTAP4-7Q9BYR0 210 aa3.95□□□□□ -1.78
CLIP3-204ENST00000590559 PMAIP1Q13794 54 aa3.94□□□□□ -1.78
CLIP3-204ENST00000590559 KRTAP20-2Q3LI61 65 aa3.93□□□□□ -1.78
CLIP3-204ENST00000590559 TNP1P09430 55 aa3.92□□□□□ -1.78
CLIP3-204ENST00000590559 KRTAP5-5Q701N2 237 aaPredicted RBP3.92□□□□□ -1.78
CLIP3-204ENST00000590559 A8MU10 97 aa3.91□□□□□ -1.78
CLIP3-204ENST00000590559 SPRR5A0A1B0GTR4 108 aa3.89□□□□□ -1.79
CLIP3-204ENST00000590559 A0A1B0GU69 56 aa3.89□□□□□ -1.79
CLIP3-204ENST00000590559 UQCR11O14957 56 aa3.86□□□□□ -1.79
CLIP3-204ENST00000590559 KRTAP12-3P60328 96 aa3.86□□□□□ -1.79
CLIP3-204ENST00000590559 KTN1-AS1Q86SY8 53 aa3.86□□□□□ -1.79
CLIP3-204ENST00000590559 SYNE1Q8NF91 8797 aaKnown RBP3.83□□□□□ -1.8
CLIP3-204ENST00000590559 MIR22HGQ0VDD5 57 aa3.81□□□□□ -1.8
CLIP3-204ENST00000590559 KRTAP12-4P60329 112 aa3.78□□□□□ -1.8
CLIP3-204ENST00000590559 LOC100996750A0A140TA64 210 aa3.75□□□□□ -1.81
CLIP3-204ENST00000590559 H3BS24 57 aa3.7□□□□□ -1.82
CLIP3-204ENST00000590559 KRTAP19-4Q3LI73 84 aa3.67□□□□□ -1.82
CLIP3-204ENST00000590559 K7ERS5 55 aa3.64□□□□□ -1.83
CLIP3-204ENST00000590559 KRTAP5-2Q701N4 177 aa3.63□□□□□ -1.83
CLIP3-204ENST00000590559 KRTAP4-11Q9BYQ6 195 aa3.63□□□□□ -1.83
CLIP3-204ENST00000590559 KRTAP25-1Q3LHN0 102 aa3.61□□□□□ -1.83
CLIP3-204ENST00000590559 PRAC1Q96KF2 57 aa3.55□□□□□ -1.84
CLIP3-204ENST00000590559 KRTAP5-8O75690 187 aa3.54□□□□□ -1.84
CLIP3-204ENST00000590559 MT1AP04731 61 aa3.54□□□□□ -1.84
CLIP3-204ENST00000590559 KRTAP6-1Q3LI64 71 aa3.54□□□□□ -1.84
CLIP3-204ENST00000590559 LCE3CQ5T5A8 94 aa3.54□□□□□ -1.84
CLIP3-204ENST00000590559 KRTAP15-1Q3LI76 137 aa3.53□□□□□ -1.84
CLIP3-204ENST00000590559 A0A0A0MQY5 61 aa3.52□□□□□ -1.85
CLIP3-204ENST00000590559 MUC5BQ9HC84 5762 aaPredicted RBP3.51□□□□□ -1.85
CLIP3-204ENST00000590559 KRTAP23-1A1A580 65 aa3.5□□□□□ -1.85
CLIP3-204ENST00000590559 ROMO1P60602 79 aa3.5□□□□□ -1.85
CLIP3-204ENST00000590559 MUC5ACP98088 5654 aa3.49□□□□□ -1.85
CLIP3-204ENST00000590559 AHNAKQ09666 5890 aaKnown RBP3.47□□□□□ -1.85
CLIP3-204ENST00000590559 KRTAP9-4Q9BYQ2 154 aa3.45□□□□□ -1.86
CLIP3-204ENST00000590559 OBSCNQ5VST9 7968 aa3.43□□□□□ -1.86
CLIP3-204ENST00000590559 KRTAP6-2Q3LI66 62 aa3.41□□□□□ -1.86
CLIP3-204ENST00000590559 KRTAP9-6A8MVA2 160 aa3.4□□□□□ -1.87
CLIP3-204ENST00000590559 KRTAP9-9Q9BYP9 154 aa3.33□□□□□ -1.88
CLIP3-204ENST00000590559 KRTAP5-1Q6L8H4 278 aa3.29□□□□□ -1.88
CLIP3-204ENST00000590559 MT3P25713 68 aa3.22□□□□□ -1.89
CLIP3-204ENST00000590559 LCE1EQ5T753 118 aa3.05□□□□□ -1.92
CLIP3-204ENST00000590559 LUZP6Q538Z0 58 aa3.01□□□□□ -1.93
CLIP3-204ENST00000590559 NDUFAF8A1L188 74 aa3□□□□□ -1.93
CLIP3-204ENST00000590559 KRTAP4-2Q9BYR5 136 aa2.92□□□□□ -1.94
CLIP3-204ENST00000590559 LCE1CQ5T751 118 aa2.84□□□□□ -1.95
CLIP3-204ENST00000590559 LCE1BQ5T7P3 118 aa2.84□□□□□ -1.95
CLIP3-204ENST00000590559 KRTAP4-12Q9BQ66 201 aa2.67□□□□□ -1.98
CLIP3-204ENST00000590559 INE1O15225 51 aa2.61□□□□□ -1.99
CLIP3-204ENST00000590559 KRTAP5-11Q6L8G4 156 aa2.6□□□□□ -1.99
CLIP3-204ENST00000590559 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.58□□□□□ -2
CLIP3-204ENST00000590559 LCE1FQ5T754 118 aa2.57□□□□□ -2
CLIP3-204ENST00000590559 LCE3DQ9BYE3 92 aa2.49□□□□□ -2.01
CLIP3-204ENST00000590559 PHGR1C9JFL3 82 aa2.38□□□□□ -2.03
CLIP3-204ENST00000590559 KRTAP21-2Q3LI59 83 aa2.37□□□□□ -2.03
CLIP3-204ENST00000590559 LCE3EQ5T5B0 92 aa2.3□□□□□ -2.04
CLIP3-204ENST00000590559 KRTAP4-4Q9BYR3 166 aa2.14□□□□□ -2.07
CLIP3-204ENST00000590559 MUC19Q7Z5P9 8384 aa2.13□□□□□ -2.07
CLIP3-204ENST00000590559 KRTAP21-1Q3LI58 79 aa1.81□□□□□ -2.12
CLIP3-204ENST00000590559 PRM1P04553 51 aa1.79□□□□□ -2.12
CLIP3-204ENST00000590559 MUC16Q8WXI7 14507 aa1.51□□□□□ -2.17
Retrieved 78 of 20,778 RNA–protein pairs in 55.7 ms