RNA–Protein interactions for RNA: ENST00000589266.5

CIRBP-223, Transcript of cold inducible RNA binding protein, human

TSL 3

Gene CIRBP, Length 616 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CIRBP-223	ENST00000589266	KRTAP4-8	Q9BYQ9	185 aa		9.68	□□□□□ -0.86
CIRBP-223	ENST00000589266	PRO0628	Q9UI54	55 aa		9.6	□□□□□ -0.87
CIRBP-223	ENST00000589266	PMAIP1	Q13794	54 aa		9.51	□□□□□ -0.89
CIRBP-223	ENST00000589266	KRTAP23-1	A1A580	65 aa		9.5	□□□□□ -0.89
CIRBP-223	ENST00000589266	LCE3A	Q5TA76	89 aa		9.49	□□□□□ -0.89
CIRBP-223	ENST00000589266	DST	Q03001	7570 aa	Known RBP	9.36	□□□□□ -0.91
CIRBP-223	ENST00000589266	PP632	Q6XCG6	107 aa		9.34	□□□□□ -0.91
CIRBP-223	ENST00000589266	KRTAP19-7	Q3SYF9	63 aa		9.32	□□□□□ -0.92
CIRBP-223	ENST00000589266	KRTAP19-5	Q3LI72	72 aa		9.29	□□□□□ -0.92
CIRBP-223	ENST00000589266	KRTAP4-9	Q9BYQ8	210 aa		9.26	□□□□□ -0.93
CIRBP-223	ENST00000589266	MT1E	P04732	61 aa		9.21	□□□□□ -0.94
CIRBP-223	ENST00000589266	KRTAP12-3	P60328	96 aa		9.17	□□□□□ -0.94
CIRBP-223	ENST00000589266	KRTAP19-3	Q7Z4W3	81 aa		8.97	□□□□□ -0.97
CIRBP-223	ENST00000589266	KTN1-AS1	Q86SY8	53 aa		8.96	□□□□□ -0.98
CIRBP-223	ENST00000589266	LCE1D	Q5T752	114 aa		8.94	□□□□□ -0.98
CIRBP-223	ENST00000589266	MT1L	Q93083	61 aa		8.94	□□□□□ -0.98
CIRBP-223	ENST00000589266	LCE5A	Q5TCM9	118 aa		8.93	□□□□□ -0.98
CIRBP-223	ENST00000589266	MT1G	P13640	62 aa		8.89	□□□□□ -0.99
CIRBP-223	ENST00000589266	PRAC1	Q96KF2	57 aa		8.88	□□□□□ -0.99
CIRBP-223	ENST00000589266	KRTAP19-4	Q3LI73	84 aa		8.86	□□□□□ -0.99
CIRBP-223	ENST00000589266	KRTAP15-1	Q3LI76	137 aa		8.86	□□□□□ -0.99
CIRBP-223	ENST00000589266	HMCN1	Q96RW7	5635 aa		8.84	□□□□□ -0.99
CIRBP-223	ENST00000589266	AHNAK2	Q8IVF2	5795 aa		8.77	□□□□□ -1.01
CIRBP-223	ENST00000589266	MT4	P47944	62 aa		8.75	□□□□□ -1.01
CIRBP-223	ENST00000589266	LCE4A	Q5TA78	99 aa		8.72	□□□□□ -1.01
CIRBP-223	ENST00000589266	KRTAP5-10	Q6L8G5	202 aa		8.7	□□□□□ -1.02
CIRBP-223	ENST00000589266	MT1M	Q8N339	61 aa		8.7	□□□□□ -1.02
CIRBP-223	ENST00000589266	LCE3C	Q5T5A8	94 aa		8.53	□□□□□ -1.04
CIRBP-223	ENST00000589266	KRTAP5-7	Q6L8G8	165 aa		8.47	□□□□□ -1.05
CIRBP-223	ENST00000589266	KRTAP4-7	Q9BYR0	210 aa		8.47	□□□□□ -1.05
CIRBP-223	ENST00000589266	KRTAP4-6	Q9BYQ5	205 aa		8.41	□□□□□ -1.06
CIRBP-223	ENST00000589266	KRTAP5-4	Q6L8H1	288 aa		8.4	□□□□□ -1.06
CIRBP-223	ENST00000589266	SVIP	Q8NHG7	77 aa		8.4	□□□□□ -1.06
CIRBP-223	ENST00000589266	KRTAP4-3	Q9BYR4	195 aa		8.39	□□□□□ -1.07
CIRBP-223	ENST00000589266	KRTAP5-3	Q6L8H2	238 aa		8.32	□□□□□ -1.08
CIRBP-223	ENST00000589266	SPRR5	A0A1B0GTR4	108 aa		8.16	□□□□□ -1.1
CIRBP-223	ENST00000589266	KRTAP20-2	Q3LI61	65 aa		7.99	□□□□□ -1.13
CIRBP-223	ENST00000589266	LOC100996750	A0A140TA64	210 aa		7.98	□□□□□ -1.13
CIRBP-223	ENST00000589266	KRTAP9-6	A8MVA2	160 aa		7.98	□□□□□ -1.13
CIRBP-223	ENST00000589266	KRTAP5-5	Q701N2	237 aa	Predicted RBP	7.92	□□□□□ -1.14
CIRBP-223	ENST00000589266	KRTAP12-4	P60329	112 aa		7.76	□□□□□ -1.17
CIRBP-223	ENST00000589266	MT1A	P04731	61 aa		7.64	□□□□□ -1.19
CIRBP-223	ENST00000589266	SYNE1	Q8NF91	8797 aa	Known RBP	7.58	□□□□□ -1.2
CIRBP-223	ENST00000589266	KRTAP6-1	Q3LI64	71 aa		7.5	□□□□□ -1.21
CIRBP-223	ENST00000589266	KRTAP4-11	Q9BYQ6	195 aa		7.5	□□□□□ -1.21
CIRBP-223	ENST00000589266	LUZP6	Q538Z0	58 aa		7.46	□□□□□ -1.22
CIRBP-223	ENST00000589266	AHNAK	Q09666	5890 aa	Known RBP	7.46	□□□□□ -1.22
CIRBP-223	ENST00000589266	MUC5AC	P98088	5654 aa		7.38	□□□□□ -1.23
CIRBP-223	ENST00000589266	MUC5B	Q9HC84	5762 aa	Predicted RBP	7.34	□□□□□ -1.23
CIRBP-223	ENST00000589266	KRTAP9-4	Q9BYQ2	154 aa		7.3	□□□□□ -1.24
CIRBP-223	ENST00000589266	KRTAP5-8	O75690	187 aa		7.27	□□□□□ -1.25
CIRBP-223	ENST00000589266	KRTAP5-2	Q701N4	177 aa		7.22	□□□□□ -1.25
CIRBP-223	ENST00000589266	KRTAP9-9	Q9BYP9	154 aa		7.05	□□□□□ -1.28
CIRBP-223	ENST00000589266	KRTAP6-2	Q3LI66	62 aa		7	□□□□□ -1.29
CIRBP-223	ENST00000589266	OBSCN	Q5VST9	7968 aa		6.96	□□□□□ -1.29
CIRBP-223	ENST00000589266	MT3	P25713	68 aa		6.96	□□□□□ -1.3
CIRBP-223	ENST00000589266	NDUFAF8	A1L188	74 aa		6.78	□□□□□ -1.32
CIRBP-223	ENST00000589266	KRTAP5-1	Q6L8H4	278 aa		6.63	□□□□□ -1.35
CIRBP-223	ENST00000589266	LCE3D	Q9BYE3	92 aa		6.32	□□□□□ -1.4
CIRBP-223	ENST00000589266	LCE1E	Q5T753	118 aa		6.23	□□□□□ -1.41
CIRBP-223	ENST00000589266	LCE3E	Q5T5B0	92 aa		6.1	□□□□□ -1.43
CIRBP-223	ENST00000589266		A0A0A0MQY5	61 aa		5.9	□□□□□ -1.46
CIRBP-223	ENST00000589266	KRTAP4-2	Q9BYR5	136 aa		5.8	□□□□□ -1.48
CIRBP-223	ENST00000589266	LCE1B	Q5T7P3	118 aa		5.79	□□□□□ -1.48
CIRBP-223	ENST00000589266	LCE1C	Q5T751	118 aa		5.76	□□□□□ -1.49
CIRBP-223	ENST00000589266	INE1	O15225	51 aa		5.71	□□□□□ -1.5
CIRBP-223	ENST00000589266	KRTAP4-12	Q9BQ66	201 aa		5.56	□□□□□ -1.52
CIRBP-223	ENST00000589266	KRTAP5-6	Q6L8G9	129 aa	Predicted RBP	5.38	□□□□□ -1.55
CIRBP-223	ENST00000589266	KRTAP5-11	Q6L8G4	156 aa		5.28	□□□□□ -1.56
CIRBP-223	ENST00000589266	LCE1F	Q5T754	118 aa		5.23	□□□□□ -1.57
CIRBP-223	ENST00000589266	PHGR1	C9JFL3	82 aa		5.11	□□□□□ -1.59
CIRBP-223	ENST00000589266	PRM1	P04553	51 aa		5.01	□□□□□ -1.61
CIRBP-223	ENST00000589266	KRTAP21-2	Q3LI59	83 aa		4.95	□□□□□ -1.62
CIRBP-223	ENST00000589266		H3BS24	57 aa		4.91	□□□□□ -1.62
CIRBP-223	ENST00000589266	MUC19	Q7Z5P9	8384 aa		4.37	□□□□□ -1.71
CIRBP-223	ENST00000589266	KRTAP4-4	Q9BYR3	166 aa		4.34	□□□□□ -1.71
CIRBP-223	ENST00000589266	KRTAP21-1	Q3LI58	79 aa		3.9	□□□□□ -1.79
CIRBP-223	ENST00000589266	MUC16	Q8WXI7	14507 aa		3.05	□□□□□ -1.92

Retrieved 78 of 20,778 RNA–protein pairs in 179 ms