RNA–Protein interactions for RNA: ENST00000589219.1

VPS25-202, Transcript of vacuolar protein sorting 25 homolog, humanhuman

TSL 2

Gene VPS25, Length 914 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS25-202ENST00000589219 SYNE2Q8WXH0 6885 aaKnown RBP4.09□□□□□ -1.76
VPS25-202ENST00000589219 KRTAP10-5P60370 271 aa4.04□□□□□ -1.76
VPS25-202ENST00000589219 MT1XP80297 61 aa4.04□□□□□ -1.76
VPS25-202ENST00000589219 PRO2289Q9P1D8 64 aa4.03□□□□□ -1.76
VPS25-202ENST00000589219 LCE3AQ5TA76 89 aa4□□□□□ -1.77
VPS25-202ENST00000589219 KRTAP10-12P60413 245 aa3.96□□□□□ -1.78
VPS25-202ENST00000589219 KRTAP8-1Q8IUC2 63 aa3.95□□□□□ -1.78
VPS25-202ENST00000589219 NDUFAF8A1L188 74 aa3.93□□□□□ -1.78
VPS25-202ENST00000589219 MUC12Q9UKN1 5478 aa3.91□□□□□ -1.78
VPS25-202ENST00000589219 LUZP6Q538Z0 58 aa3.9□□□□□ -1.79
VPS25-202ENST00000589219 SPRR5A0A1B0GTR4 108 aa3.89□□□□□ -1.79
VPS25-202ENST00000589219 KRTAP5-9P26371 169 aa3.89□□□□□ -1.79
VPS25-202ENST00000589219 KRTAP20-1Q3LI63 56 aa3.88□□□□□ -1.79
VPS25-202ENST00000589219 KRTAP10-7P60409 375 aaPredicted RBP3.87□□□□□ -1.79
VPS25-202ENST00000589219 KRTAP12-3P60328 96 aa3.84□□□□□ -1.79
VPS25-202ENST00000589219 NEBP20929 6669 aa3.83□□□□□ -1.8
VPS25-202ENST00000589219 KMT2DO14686 5537 aa3.82□□□□□ -1.8
VPS25-202ENST00000589219 MDN1Q9NU22 5596 aa3.8□□□□□ -1.8
VPS25-202ENST00000589219 LCE1AQ5T7P2 110 aa3.78□□□□□ -1.8
VPS25-202ENST00000589219 KRTAP2-3P0C7H8 128 aa3.76□□□□□ -1.81
VPS25-202ENST00000589219 SPRR2FQ96RM1 72 aa3.76□□□□□ -1.81
VPS25-202ENST00000589219 KRTAP2-4Q9BYR9 128 aa3.76□□□□□ -1.81
VPS25-202ENST00000589219 SPRR2EP22531 72 aa3.73□□□□□ -1.81
VPS25-202ENST00000589219 SPRR2BP35325 72 aa3.73□□□□□ -1.81
VPS25-202ENST00000589219 SPRR2AP35326 72 aa3.73□□□□□ -1.81
VPS25-202ENST00000589219 KRTAP19-5Q3LI72 72 aa3.71□□□□□ -1.82
VPS25-202ENST00000589219 KRTAP2-2Q9BYT5 123 aa3.64□□□□□ -1.83
VPS25-202ENST00000589219 KRTAP2-1Q9BYU5 128 aa3.64□□□□□ -1.83
VPS25-202ENST00000589219 SPRR2DP22532 72 aa3.61□□□□□ -1.83
VPS25-202ENST00000589219 KRTAP19-7Q3SYF9 63 aa3.6□□□□□ -1.83
VPS25-202ENST00000589219 LCE3CQ5T5A8 94 aa3.59□□□□□ -1.83
VPS25-202ENST00000589219 A0A0A0MQY5 61 aa3.58□□□□□ -1.84
VPS25-202ENST00000589219 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.56□□□□□ -1.84
VPS25-202ENST00000589219 MT1EP04732 61 aa3.54□□□□□ -1.84
VPS25-202ENST00000589219 MT1LQ93083 61 aa3.51□□□□□ -1.85
VPS25-202ENST00000589219 KRTAP5-11Q6L8G4 156 aa3.5□□□□□ -1.85
VPS25-202ENST00000589219 KRTAP9-6A8MVA2 160 aa3.37□□□□□ -1.87
VPS25-202ENST00000589219 KRTAP19-3Q7Z4W3 81 aa3.36□□□□□ -1.87
VPS25-202ENST00000589219 MT1GP13640 62 aa3.34□□□□□ -1.87
VPS25-202ENST00000589219 LCE1EQ5T753 118 aa3.34□□□□□ -1.87
VPS25-202ENST00000589219 INE1O15225 51 aa3.32□□□□□ -1.88
VPS25-202ENST00000589219 MT1MQ8N339 61 aa3.32□□□□□ -1.88
VPS25-202ENST00000589219 DSTQ03001 7570 aaKnown RBP3.27□□□□□ -1.89
VPS25-202ENST00000589219 GPR98Q8WXG9 6306 aa3.21□□□□□ -1.9
VPS25-202ENST00000589219 KRTAP4-3Q9BYR4 195 aa3.2□□□□□ -1.9
VPS25-202ENST00000589219 MT4P47944 62 aa3.15□□□□□ -1.91
VPS25-202ENST00000589219 MT3P25713 68 aa3.12□□□□□ -1.91
VPS25-202ENST00000589219 HMCN1Q96RW7 5635 aa3.12□□□□□ -1.91
VPS25-202ENST00000589219 KRTAP5-4Q6L8H1 288 aa3.09□□□□□ -1.91
VPS25-202ENST00000589219 KRTAP5-1Q6L8H4 278 aa3.04□□□□□ -1.92
VPS25-202ENST00000589219 KRTAP5-10Q6L8G5 202 aa3.02□□□□□ -1.93
VPS25-202ENST00000589219 AHNAK2Q8IVF2 5795 aa3.01□□□□□ -1.93
VPS25-202ENST00000589219 MT1AP04731 61 aa3□□□□□ -1.93
VPS25-202ENST00000589219 KRTAP5-5Q701N2 237 aaPredicted RBP2.97□□□□□ -1.93
VPS25-202ENST00000589219 KRTAP5-7Q6L8G8 165 aa2.94□□□□□ -1.94
VPS25-202ENST00000589219 KRTAP6-1Q3LI64 71 aa2.93□□□□□ -1.94
VPS25-202ENST00000589219 KRTAP12-4P60329 112 aa2.92□□□□□ -1.94
VPS25-202ENST00000589219 KRTAP20-2Q3LI61 65 aa2.92□□□□□ -1.94
VPS25-202ENST00000589219 KRTAP4-4Q9BYR3 166 aa2.92□□□□□ -1.94
VPS25-202ENST00000589219 LCE1FQ5T754 118 aa2.87□□□□□ -1.95
VPS25-202ENST00000589219 SYNE1Q8NF91 8797 aaKnown RBP2.74□□□□□ -1.97
VPS25-202ENST00000589219 LCE3DQ9BYE3 92 aa2.74□□□□□ -1.97
VPS25-202ENST00000589219 LCE3EQ5T5B0 92 aa2.7□□□□□ -1.98
VPS25-202ENST00000589219 KRTAP5-2Q701N4 177 aa2.69□□□□□ -1.98
VPS25-202ENST00000589219 KRTAP6-2Q3LI66 62 aa2.65□□□□□ -1.99
VPS25-202ENST00000589219 OBSCNQ5VST9 7968 aa2.63□□□□□ -1.99
VPS25-202ENST00000589219 KRTAP5-8O75690 187 aa2.6□□□□□ -1.99
VPS25-202ENST00000589219 MUC5ACP98088 5654 aa2.51□□□□□ -2.01
VPS25-202ENST00000589219 MUC5BQ9HC84 5762 aaPredicted RBP2.51□□□□□ -2.01
VPS25-202ENST00000589219 AHNAKQ09666 5890 aaKnown RBP2.47□□□□□ -2.01
VPS25-202ENST00000589219 PRM1P04553 51 aa2.46□□□□□ -2.02
VPS25-202ENST00000589219 LCE1CQ5T751 118 aa2.18□□□□□ -2.06
VPS25-202ENST00000589219 LCE1BQ5T7P3 118 aa2.18□□□□□ -2.06
VPS25-202ENST00000589219 KRTAP21-2Q3LI59 83 aa1.91□□□□□ -2.1
VPS25-202ENST00000589219 MUC19Q7Z5P9 8384 aa1.8□□□□□ -2.12
VPS25-202ENST00000589219 PHGR1C9JFL3 82 aa1.78□□□□□ -2.12
VPS25-202ENST00000589219 KRTAP21-1Q3LI58 79 aa1.56□□□□□ -2.16
VPS25-202ENST00000589219 MUC16Q8WXI7 14507 aa1.1□□□□□ -2.23
Retrieved 78 of 20,778 RNA–protein pairs in 88.5 ms