RNA–Protein interactions for RNA: ENST00000585466.1

CLIP3-202, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

TSL 2

Gene CLIP3, Length 368 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-202ENST00000585466 MIR22HGQ0VDD5 57 aa5.45□□□□□ -1.54
CLIP3-202ENST00000585466 LCE3AQ5TA76 89 aa5.43□□□□□ -1.54
CLIP3-202ENST00000585466 BRK1Q8WUW1 75 aa5.43□□□□□ -1.54
CLIP3-202ENST00000585466 CDC42SE1Q9NRR8 79 aa5.43□□□□□ -1.54
CLIP3-202ENST00000585466 MT1LQ93083 61 aa5.42□□□□□ -1.54
CLIP3-202ENST00000585466 KRTAP4-9Q9BYQ8 210 aa5.4□□□□□ -1.54
CLIP3-202ENST00000585466 MT1MQ8N339 61 aa5.39□□□□□ -1.55
CLIP3-202ENST00000585466 TNP1P09430 55 aa5.38□□□□□ -1.55
CLIP3-202ENST00000585466 PP632Q6XCG6 107 aa5.33□□□□□ -1.56
CLIP3-202ENST00000585466 GPR98Q8WXG9 6306 aa5.33□□□□□ -1.56
CLIP3-202ENST00000585466 PRO0628Q9UI54 55 aa5.3□□□□□ -1.56
CLIP3-202ENST00000585466 KRTAP4-3Q9BYR4 195 aa5.29□□□□□ -1.56
CLIP3-202ENST00000585466 LCE1DQ5T752 114 aa5.24□□□□□ -1.57
CLIP3-202ENST00000585466 KRTAP12-3P60328 96 aa5.2□□□□□ -1.58
CLIP3-202ENST00000585466 K7ERS5 55 aa5.19□□□□□ -1.58
CLIP3-202ENST00000585466 LCE4AQ5TA78 99 aa5.19□□□□□ -1.58
CLIP3-202ENST00000585466 HMCN1Q96RW7 5635 aa5.17□□□□□ -1.58
CLIP3-202ENST00000585466 MT4P47944 62 aa5.17□□□□□ -1.58
CLIP3-202ENST00000585466 KRTAP5-4Q6L8H1 288 aa5.17□□□□□ -1.58
CLIP3-202ENST00000585466 KRTAP4-7Q9BYR0 210 aa5.17□□□□□ -1.58
CLIP3-202ENST00000585466 PMAIP1Q13794 54 aa5.13□□□□□ -1.59
CLIP3-202ENST00000585466 KRTAP25-1Q3LHN0 102 aa5.1□□□□□ -1.59
CLIP3-202ENST00000585466 AHNAK2Q8IVF2 5795 aa5.04□□□□□ -1.6
CLIP3-202ENST00000585466 KRTAP4-6Q9BYQ5 205 aa5.04□□□□□ -1.6
CLIP3-202ENST00000585466 ROMO1P60602 79 aa5□□□□□ -1.61
CLIP3-202ENST00000585466 KRTAP5-5Q701N2 237 aaPredicted RBP4.99□□□□□ -1.61
CLIP3-202ENST00000585466 KRTAP23-1A1A580 65 aa4.93□□□□□ -1.62
CLIP3-202ENST00000585466 KRTAP5-10Q6L8G5 202 aa4.93□□□□□ -1.62
CLIP3-202ENST00000585466 KTN1-AS1Q86SY8 53 aa4.91□□□□□ -1.62
CLIP3-202ENST00000585466 LOC100996750A0A140TA64 210 aa4.9□□□□□ -1.63
CLIP3-202ENST00000585466 KRTAP19-4Q3LI73 84 aa4.87□□□□□ -1.63
CLIP3-202ENST00000585466 KRTAP20-2Q3LI61 65 aa4.85□□□□□ -1.63
CLIP3-202ENST00000585466 KRTAP15-1Q3LI76 137 aa4.85□□□□□ -1.63
CLIP3-202ENST00000585466 SYNE1Q8NF91 8797 aaKnown RBP4.84□□□□□ -1.63
CLIP3-202ENST00000585466 PRAC1Q96KF2 57 aa4.84□□□□□ -1.63
CLIP3-202ENST00000585466 SPRR5A0A1B0GTR4 108 aa4.81□□□□□ -1.64
CLIP3-202ENST00000585466 LCE3CQ5T5A8 94 aa4.8□□□□□ -1.64
CLIP3-202ENST00000585466 KRTAP5-3Q6L8H2 238 aa4.79□□□□□ -1.64
CLIP3-202ENST00000585466 SVIPQ8NHG7 77 aa4.74□□□□□ -1.65
CLIP3-202ENST00000585466 KRTAP12-4P60329 112 aa4.73□□□□□ -1.65
CLIP3-202ENST00000585466 KRTAP5-7Q6L8G8 165 aa4.73□□□□□ -1.65
CLIP3-202ENST00000585466 KRTAP9-6A8MVA2 160 aa4.62□□□□□ -1.67
CLIP3-202ENST00000585466 MT1AP04731 61 aa4.6□□□□□ -1.67
CLIP3-202ENST00000585466 KRTAP6-1Q3LI64 71 aa4.59□□□□□ -1.67
CLIP3-202ENST00000585466 KRTAP5-2Q701N4 177 aa4.55□□□□□ -1.68
CLIP3-202ENST00000585466 KRTAP9-4Q9BYQ2 154 aa4.44□□□□□ -1.7
CLIP3-202ENST00000585466 KRTAP4-11Q9BYQ6 195 aa4.41□□□□□ -1.7
CLIP3-202ENST00000585466 KRTAP6-2Q3LI66 62 aa4.36□□□□□ -1.71
CLIP3-202ENST00000585466 KRTAP5-8O75690 187 aa4.3□□□□□ -1.72
CLIP3-202ENST00000585466 OBSCNQ5VST9 7968 aa4.21□□□□□ -1.73
CLIP3-202ENST00000585466 MT3P25713 68 aa4.16□□□□□ -1.74
CLIP3-202ENST00000585466 AHNAKQ09666 5890 aaKnown RBP4.14□□□□□ -1.75
CLIP3-202ENST00000585466 MUC5BQ9HC84 5762 aaPredicted RBP4.12□□□□□ -1.75
CLIP3-202ENST00000585466 MUC5ACP98088 5654 aa4.1□□□□□ -1.75
CLIP3-202ENST00000585466 KRTAP5-1Q6L8H4 278 aa4.07□□□□□ -1.76
CLIP3-202ENST00000585466 KRTAP9-9Q9BYP9 154 aa4.02□□□□□ -1.77
CLIP3-202ENST00000585466 LUZP6Q538Z0 58 aa3.91□□□□□ -1.78
CLIP3-202ENST00000585466 LCE1EQ5T753 118 aa3.85□□□□□ -1.79
CLIP3-202ENST00000585466 NDUFAF8A1L188 74 aa3.81□□□□□ -1.8
CLIP3-202ENST00000585466 KRTAP4-2Q9BYR5 136 aa3.69□□□□□ -1.82
CLIP3-202ENST00000585466 LCE1CQ5T751 118 aa3.58□□□□□ -1.84
CLIP3-202ENST00000585466 LCE1BQ5T7P3 118 aa3.58□□□□□ -1.84
CLIP3-202ENST00000585466 LCE3DQ9BYE3 92 aa3.43□□□□□ -1.86
CLIP3-202ENST00000585466 A0A0A0MQY5 61 aa3.32□□□□□ -1.88
CLIP3-202ENST00000585466 KRTAP4-12Q9BQ66 201 aa3.32□□□□□ -1.88
CLIP3-202ENST00000585466 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.3□□□□□ -1.88
CLIP3-202ENST00000585466 KRTAP5-11Q6L8G4 156 aa3.26□□□□□ -1.89
CLIP3-202ENST00000585466 H3BS24 57 aa3.24□□□□□ -1.89
CLIP3-202ENST00000585466 LCE3EQ5T5B0 92 aa3.22□□□□□ -1.89
CLIP3-202ENST00000585466 INE1O15225 51 aa3.14□□□□□ -1.91
CLIP3-202ENST00000585466 LCE1FQ5T754 118 aa3.13□□□□□ -1.91
CLIP3-202ENST00000585466 KRTAP21-2Q3LI59 83 aa3.05□□□□□ -1.92
CLIP3-202ENST00000585466 PHGR1C9JFL3 82 aa2.86□□□□□ -1.95
CLIP3-202ENST00000585466 KRTAP4-4Q9BYR3 166 aa2.75□□□□□ -1.97
CLIP3-202ENST00000585466 MUC19Q7Z5P9 8384 aa2.63□□□□□ -1.99
CLIP3-202ENST00000585466 PRM1P04553 51 aa2.6□□□□□ -1.99
CLIP3-202ENST00000585466 KRTAP21-1Q3LI58 79 aa2.13□□□□□ -2.07
CLIP3-202ENST00000585466 MUC16Q8WXI7 14507 aa1.89□□□□□ -2.11
Retrieved 78 of 20,778 RNA–protein pairs in 50.7 ms