RNA–Protein interactions for RNA: ENST00000585370.1

LIG3-203, Transcript of DNA ligase 3, humanhuman

TSL 3

Gene LIG3, Length 235 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-203ENST00000585370 MDN1Q9NU22 5596 aa4.21□□□□□ -1.73
LIG3-203ENST00000585370 KRTAP5-9P26371 169 aa4.21□□□□□ -1.74
LIG3-203ENST00000585370 KRTAP20-1Q3LI63 56 aa4.21□□□□□ -1.74
LIG3-203ENST00000585370 KRTAP4-2Q9BYR5 136 aa4.18□□□□□ -1.74
LIG3-203ENST00000585370 KRTAP4-11Q9BYQ6 195 aa4.11□□□□□ -1.75
LIG3-203ENST00000585370 KRTAP10-12P60413 245 aa4.09□□□□□ -1.75
LIG3-203ENST00000585370 KRTAP2-3P0C7H8 128 aa4.07□□□□□ -1.76
LIG3-203ENST00000585370 KRTAP10-7P60409 375 aaPredicted RBP4.07□□□□□ -1.76
LIG3-203ENST00000585370 KRTAP19-4Q3LI73 84 aa4.07□□□□□ -1.76
LIG3-203ENST00000585370 KRTAP2-4Q9BYR9 128 aa4.07□□□□□ -1.76
LIG3-203ENST00000585370 LCE3AQ5TA76 89 aa4.06□□□□□ -1.76
LIG3-203ENST00000585370 KRTAP8-1Q8IUC2 63 aa4.05□□□□□ -1.76
LIG3-203ENST00000585370 SPRR2FQ96RM1 72 aa4.03□□□□□ -1.76
LIG3-203ENST00000585370 SPRR2EP22531 72 aa4.01□□□□□ -1.77
LIG3-203ENST00000585370 SPRR2BP35325 72 aa4.01□□□□□ -1.77
LIG3-203ENST00000585370 SPRR2AP35326 72 aa4.01□□□□□ -1.77
LIG3-203ENST00000585370 LCE5AQ5TCM9 118 aa4.01□□□□□ -1.77
LIG3-203ENST00000585370 H3BS24 57 aa3.96□□□□□ -1.78
LIG3-203ENST00000585370 LCE1AQ5T7P2 110 aa3.95□□□□□ -1.78
LIG3-203ENST00000585370 KRTAP12-3P60328 96 aa3.94□□□□□ -1.78
LIG3-203ENST00000585370 KRTAP2-2Q9BYT5 123 aa3.93□□□□□ -1.78
LIG3-203ENST00000585370 KRTAP2-1Q9BYU5 128 aa3.93□□□□□ -1.78
LIG3-203ENST00000585370 KRTAP15-1Q3LI76 137 aa3.91□□□□□ -1.78
LIG3-203ENST00000585370 SPRR2DP22532 72 aa3.87□□□□□ -1.79
LIG3-203ENST00000585370 KRTAP19-5Q3LI72 72 aa3.86□□□□□ -1.79
LIG3-203ENST00000585370 KRTAP19-7Q3SYF9 63 aa3.79□□□□□ -1.8
LIG3-203ENST00000585370 SPRR5A0A1B0GTR4 108 aa3.78□□□□□ -1.8
LIG3-203ENST00000585370 DSTQ03001 7570 aaKnown RBP3.75□□□□□ -1.81
LIG3-203ENST00000585370 LUZP6Q538Z0 58 aa3.74□□□□□ -1.81
LIG3-203ENST00000585370 KRTAP5-3Q6L8H2 238 aa3.74□□□□□ -1.81
LIG3-203ENST00000585370 MT1EP04732 61 aa3.73□□□□□ -1.81
LIG3-203ENST00000585370 LCE3CQ5T5A8 94 aa3.69□□□□□ -1.82
LIG3-203ENST00000585370 GPR98Q8WXG9 6306 aa3.69□□□□□ -1.82
LIG3-203ENST00000585370 MT1LQ93083 61 aa3.68□□□□□ -1.82
LIG3-203ENST00000585370 NDUFAF8A1L188 74 aa3.61□□□□□ -1.83
LIG3-203ENST00000585370 MT1GP13640 62 aa3.61□□□□□ -1.83
LIG3-203ENST00000585370 KRTAP19-3Q7Z4W3 81 aa3.6□□□□□ -1.83
LIG3-203ENST00000585370 MT1MQ8N339 61 aa3.52□□□□□ -1.85
LIG3-203ENST00000585370 HMCN1Q96RW7 5635 aa3.47□□□□□ -1.85
LIG3-203ENST00000585370 KRTAP9-6A8MVA2 160 aa3.41□□□□□ -1.86
LIG3-203ENST00000585370 MT4P47944 62 aa3.41□□□□□ -1.86
LIG3-203ENST00000585370 AHNAK2Q8IVF2 5795 aa3.38□□□□□ -1.87
LIG3-203ENST00000585370 KRTAP4-3Q9BYR4 195 aa3.37□□□□□ -1.87
LIG3-203ENST00000585370 KRTAP5-4Q6L8H1 288 aa3.34□□□□□ -1.87
LIG3-203ENST00000585370 KRTAP5-10Q6L8G5 202 aa3.32□□□□□ -1.88
LIG3-203ENST00000585370 A0A0A0MQY5 61 aa3.28□□□□□ -1.88
LIG3-203ENST00000585370 KRTAP5-7Q6L8G8 165 aa3.2□□□□□ -1.9
LIG3-203ENST00000585370 MT1AP04731 61 aa3.16□□□□□ -1.9
LIG3-203ENST00000585370 KRTAP5-5Q701N2 237 aaPredicted RBP3.16□□□□□ -1.9
LIG3-203ENST00000585370 KRTAP20-2Q3LI61 65 aa3.15□□□□□ -1.91
LIG3-203ENST00000585370 SYNE1Q8NF91 8797 aaKnown RBP3.14□□□□□ -1.91
LIG3-203ENST00000585370 INE1O15225 51 aa3.08□□□□□ -1.92
LIG3-203ENST00000585370 KRTAP12-4P60329 112 aa3.07□□□□□ -1.92
LIG3-203ENST00000585370 KRTAP6-1Q3LI64 71 aa3.07□□□□□ -1.92
LIG3-203ENST00000585370 KRTAP5-2Q701N4 177 aa2.9□□□□□ -1.95
LIG3-203ENST00000585370 MT3P25713 68 aa2.88□□□□□ -1.95
LIG3-203ENST00000585370 KRTAP5-8O75690 187 aa2.84□□□□□ -1.95
LIG3-203ENST00000585370 MUC5BQ9HC84 5762 aaPredicted RBP2.83□□□□□ -1.96
LIG3-203ENST00000585370 OBSCNQ5VST9 7968 aa2.82□□□□□ -1.96
LIG3-203ENST00000585370 KRTAP6-2Q3LI66 62 aa2.82□□□□□ -1.96
LIG3-203ENST00000585370 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.81□□□□□ -1.96
LIG3-203ENST00000585370 AHNAKQ09666 5890 aaKnown RBP2.81□□□□□ -1.96
LIG3-203ENST00000585370 LCE3DQ9BYE3 92 aa2.8□□□□□ -1.96
LIG3-203ENST00000585370 MUC5ACP98088 5654 aa2.8□□□□□ -1.96
LIG3-203ENST00000585370 KRTAP5-11Q6L8G4 156 aa2.78□□□□□ -1.96
LIG3-203ENST00000585370 LCE3EQ5T5B0 92 aa2.74□□□□□ -1.97
LIG3-203ENST00000585370 KRTAP5-1Q6L8H4 278 aa2.64□□□□□ -1.99
LIG3-203ENST00000585370 LCE1EQ5T753 118 aa2.62□□□□□ -1.99
LIG3-203ENST00000585370 PRM1P04553 51 aa2.37□□□□□ -2.03
LIG3-203ENST00000585370 KRTAP4-4Q9BYR3 166 aa2.34□□□□□ -2.03
LIG3-203ENST00000585370 LCE1BQ5T7P3 118 aa2.32□□□□□ -2.04
LIG3-203ENST00000585370 LCE1CQ5T751 118 aa2.31□□□□□ -2.04
LIG3-203ENST00000585370 LCE1FQ5T754 118 aa2.21□□□□□ -2.06
LIG3-203ENST00000585370 KRTAP21-2Q3LI59 83 aa2.02□□□□□ -2.09
LIG3-203ENST00000585370 PHGR1C9JFL3 82 aa1.93□□□□□ -2.1
LIG3-203ENST00000585370 MUC19Q7Z5P9 8384 aa1.76□□□□□ -2.13
LIG3-203ENST00000585370 KRTAP21-1Q3LI58 79 aa1.48□□□□□ -2.17
LIG3-203ENST00000585370 MUC16Q8WXI7 14507 aa1.24□□□□□ -2.21
Retrieved 78 of 20,778 RNA–protein pairs in 94.3 ms