RNA–Protein interactions for RNA: ENST00000584897.5

SMCHD1-211, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 2

Gene SMCHD1, Length 4,143 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-211ENST00000584897 CSAG1Q6PB30 78 aa0.91□□□□□ -2.26
SMCHD1-211ENST00000584897 FSIP2Q5CZC0 6907 aa0.91□□□□□ -2.26
SMCHD1-211ENST00000584897 KRTAP19-2Q3LHN2 52 aa0.91□□□□□ -2.26
SMCHD1-211ENST00000584897 PRR15LQ9BU68 103 aa0.91□□□□□ -2.26
SMCHD1-211ENST00000584897 SPINK7P58062 85 aa0.9□□□□□ -2.26
SMCHD1-211ENST00000584897 SERP2Q8N6R1 65 aa0.9□□□□□ -2.26
SMCHD1-211ENST00000584897 H0Y9P7 68 aa0.9□□□□□ -2.27
SMCHD1-211ENST00000584897 ETDBQ3ZM63 59 aa0.9□□□□□ -2.27
SMCHD1-211ENST00000584897 PCOTHQ58A44 107 aa0.9□□□□□ -2.27
SMCHD1-211ENST00000584897 AHNAK2Q8IVF2 5795 aa0.9□□□□□ -2.27
SMCHD1-211ENST00000584897 INE1O15225 51 aa0.89□□□□□ -2.27
SMCHD1-211ENST00000584897 CYP4F30PQ9H0H9 118 aa0.89□□□□□ -2.27
SMCHD1-211ENST00000584897 S4R3F8 94 aa0.89□□□□□ -2.27
SMCHD1-211ENST00000584897 SYNE2Q8WXH0 6885 aaKnown RBP0.89□□□□□ -2.27
SMCHD1-211ENST00000584897 M0QZ58 72 aa0.89□□□□□ -2.27
SMCHD1-211ENST00000584897 KRTAP5-10Q6L8G5 202 aa0.89□□□□□ -2.27
SMCHD1-211ENST00000584897 FLG2Q5D862 2391 aaPredicted RBP0.89□□□□□ -2.27
SMCHD1-211ENST00000584897 KLKP1Q107X0 134 aa0.89□□□□□ -2.27
SMCHD1-211ENST00000584897 Q5VV11 94 aa0.89□□□□□ -2.27
SMCHD1-211ENST00000584897 KRTAP10-10P60014 251 aa0.88□□□□□ -2.27
SMCHD1-211ENST00000584897 KMT2DO14686 5537 aa0.88□□□□□ -2.27
SMCHD1-211ENST00000584897 CHKB-CPT1BH3BT56 60 aa0.88□□□□□ -2.27
SMCHD1-211ENST00000584897 C9orf92A6NGG3 77 aa0.87□□□□□ -2.27
SMCHD1-211ENST00000584897 KRTAP5-8O75690 187 aa0.87□□□□□ -2.27
SMCHD1-211ENST00000584897 M0R2T5 61 aa0.87□□□□□ -2.27
SMCHD1-211ENST00000584897 KRTAP13-4Q3LI77 160 aa0.86□□□□□ -2.27
SMCHD1-211ENST00000584897 LINC00208Q96KT6 92 aa0.86□□□□□ -2.27
SMCHD1-211ENST00000584897 KRTAP12-1P59990 96 aa0.85□□□□□ -2.27
SMCHD1-211ENST00000584897 PLAC4Q8WY50 150 aa0.84□□□□□ -2.28
SMCHD1-211ENST00000584897 KRTAP4-1Q9BYQ7 146 aa0.84□□□□□ -2.28
SMCHD1-211ENST00000584897 LCE3DQ9BYE3 92 aa0.83□□□□□ -2.28
SMCHD1-211ENST00000584897 KRTAP19-8Q3LI54 63 aa0.83□□□□□ -2.28
SMCHD1-211ENST00000584897 SPRR2GQ9BYE4 73 aa0.83□□□□□ -2.28
SMCHD1-211ENST00000584897 C10orf95Q9H7T3 257 aa0.83□□□□□ -2.28
SMCHD1-211ENST00000584897 LINC01558Q9Y6Z2 57 aa0.82□□□□□ -2.28
SMCHD1-211ENST00000584897 MUC12Q9UKN1 5478 aa0.82□□□□□ -2.28
SMCHD1-211ENST00000584897 A0A1B0GU69 56 aa0.81□□□□□ -2.28
SMCHD1-211ENST00000584897 UQCR11O14957 56 aa0.81□□□□□ -2.28
SMCHD1-211ENST00000584897 MT-ATP8P03928 68 aa0.81□□□□□ -2.28
SMCHD1-211ENST00000584897 KRTAP12-3P60328 96 aa0.8□□□□□ -2.28
SMCHD1-211ENST00000584897 H7BZZ5 65 aa0.8□□□□□ -2.28
SMCHD1-211ENST00000584897 MT2AP02795 61 aa0.79□□□□□ -2.28
SMCHD1-211ENST00000584897 A0A087WVE0 104 aa0.79□□□□□ -2.28
SMCHD1-211ENST00000584897 MDN1Q9NU22 5596 aa0.78□□□□□ -2.28
SMCHD1-211ENST00000584897 TNP1P09430 55 aa0.78□□□□□ -2.28
SMCHD1-211ENST00000584897 SPRR2EP22531 72 aa0.78□□□□□ -2.29
SMCHD1-211ENST00000584897 SPRR2BP35325 72 aa0.78□□□□□ -2.29
SMCHD1-211ENST00000584897 SPRR2AP35326 72 aa0.78□□□□□ -2.29
SMCHD1-211ENST00000584897 SPRR2DP22532 72 aa0.77□□□□□ -2.29
SMCHD1-211ENST00000584897 SPATA8Q6RVD6 105 aa0.76□□□□□ -2.29
SMCHD1-211ENST00000584897 MT1FP04733 61 aa0.75□□□□□ -2.29
SMCHD1-211ENST00000584897 MUC5ACP98088 5654 aa0.74□□□□□ -2.29
SMCHD1-211ENST00000584897 MT1BP07438 61 aa0.72□□□□□ -2.29
SMCHD1-211ENST00000584897 KRTAP12-4P60329 112 aa0.72□□□□□ -2.29
SMCHD1-211ENST00000584897 MUC19Q7Z5P9 8384 aa0.71□□□□□ -2.3
SMCHD1-211ENST00000584897 KRTAP8-1Q8IUC2 63 aa0.7□□□□□ -2.3
SMCHD1-211ENST00000584897 SPRR2FQ96RM1 72 aa0.69□□□□□ -2.3
SMCHD1-211ENST00000584897 MT1GP13640 62 aa0.69□□□□□ -2.3
SMCHD1-211ENST00000584897 MT1XP80297 61 aa0.68□□□□□ -2.3
SMCHD1-211ENST00000584897 A0A0D9SG42 100 aa0.66□□□□□ -2.3
SMCHD1-211ENST00000584897 MT1EP04732 61 aa0.66□□□□□ -2.3
SMCHD1-211ENST00000584897 KRTAP21-2Q3LI59 83 aa0.66□□□□□ -2.3
SMCHD1-211ENST00000584897 KRTAP19-3Q7Z4W3 81 aa0.65□□□□□ -2.31
SMCHD1-211ENST00000584897 MT1MQ8N339 61 aa0.64□□□□□ -2.31
SMCHD1-211ENST00000584897 MT1LQ93083 61 aa0.64□□□□□ -2.31
SMCHD1-211ENST00000584897 KRTAP20-2Q3LI61 65 aa0.62□□□□□ -2.31
SMCHD1-211ENST00000584897 MT4P47944 62 aa0.62□□□□□ -2.31
SMCHD1-211ENST00000584897 KRTAP19-7Q3SYF9 63 aa0.6□□□□□ -2.31
SMCHD1-211ENST00000584897 KRTAP19-5Q3LI72 72 aa0.6□□□□□ -2.31
SMCHD1-211ENST00000584897 MT1AP04731 61 aa0.58□□□□□ -2.32
SMCHD1-211ENST00000584897 DSTQ03001 7570 aaKnown RBP0.57□□□□□ -2.32
SMCHD1-211ENST00000584897 MUC16Q8WXI7 14507 aa0.52□□□□□ -2.33
SMCHD1-211ENST00000584897 PHGR1C9JFL3 82 aa0.47□□□□□ -2.33
SMCHD1-211ENST00000584897 KRTAP6-1Q3LI64 71 aa0.46□□□□□ -2.34
SMCHD1-211ENST00000584897 KRTAP6-2Q3LI66 62 aa0.44□□□□□ -2.34
SMCHD1-211ENST00000584897 KRTAP21-1Q3LI58 79 aa0.42□□□□□ -2.34
SMCHD1-211ENST00000584897 SYNE1Q8NF91 8797 aaKnown RBP0.35□□□□□ -2.35
SMCHD1-211ENST00000584897 PRM1P04553 51 aa0.29□□□□□ -2.36
Retrieved 78 of 20,778 RNA–protein pairs in 13.3 ms