RNA–Protein interactions for RNA: ENST00000582448.5

SS18-221, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 585 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-221ENST00000582448 KRTAP12-2P59991 146 aa4.69□□□□□ -1.66
SS18-221ENST00000582448 PMAIP1Q13794 54 aa4.68□□□□□ -1.66
SS18-221ENST00000582448 CRIPTQ9P021 101 aa4.68□□□□□ -1.66
SS18-221ENST00000582448 A0A0D9SG42 100 aa4.67□□□□□ -1.66
SS18-221ENST00000582448 KRTAP13-4Q3LI77 160 aa4.64□□□□□ -1.67
SS18-221ENST00000582448 KRTAP20-1Q3LI63 56 aa4.62□□□□□ -1.67
SS18-221ENST00000582448 LINC01554Q52M75 96 aa4.61□□□□□ -1.67
SS18-221ENST00000582448 NEBP20929 6669 aa4.61□□□□□ -1.67
SS18-221ENST00000582448 MUC12Q9UKN1 5478 aa4.58□□□□□ -1.68
SS18-221ENST00000582448 SPINT4Q6UDR6 99 aa4.58□□□□□ -1.68
SS18-221ENST00000582448 A6NN06 94 aa4.56□□□□□ -1.68
SS18-221ENST00000582448 LCE3AQ5TA76 89 aa4.54□□□□□ -1.68
SS18-221ENST00000582448 OBSCNQ5VST9 7968 aa4.54□□□□□ -1.68
SS18-221ENST00000582448 KRTAP12-1P59990 96 aa4.51□□□□□ -1.69
SS18-221ENST00000582448 KTN1-AS1Q86SY8 53 aa4.47□□□□□ -1.69
SS18-221ENST00000582448 SPRR2GQ9BYE4 73 aa4.46□□□□□ -1.7
SS18-221ENST00000582448 ROMO1P60602 79 aa4.45□□□□□ -1.7
SS18-221ENST00000582448 CAMK2N1Q7Z7J9 78 aa4.45□□□□□ -1.7
SS18-221ENST00000582448 MT1BP07438 61 aa4.44□□□□□ -1.7
SS18-221ENST00000582448 PLAC4Q8WY50 150 aa4.44□□□□□ -1.7
SS18-221ENST00000582448 KRTAP4-3Q9BYR4 195 aa4.43□□□□□ -1.7
SS18-221ENST00000582448 KRTAP2-3P0C7H8 128 aa4.41□□□□□ -1.7
SS18-221ENST00000582448 KRTAP2-4Q9BYR9 128 aa4.41□□□□□ -1.7
SS18-221ENST00000582448 MDN1Q9NU22 5596 aa4.4□□□□□ -1.71
SS18-221ENST00000582448 KMT2DO14686 5537 aa4.37□□□□□ -1.71
SS18-221ENST00000582448 KRTAP19-8Q3LI54 63 aa4.36□□□□□ -1.71
SS18-221ENST00000582448 SPRR2EP22531 72 aa4.32□□□□□ -1.72
SS18-221ENST00000582448 SPRR2BP35325 72 aa4.32□□□□□ -1.72
SS18-221ENST00000582448 SPRR2AP35326 72 aa4.32□□□□□ -1.72
SS18-221ENST00000582448 SPRR2FQ96RM1 72 aa4.3□□□□□ -1.72
SS18-221ENST00000582448 KRTAP2-1Q9BYU5 128 aa4.26□□□□□ -1.73
SS18-221ENST00000582448 KRTAP25-1Q3LHN0 102 aa4.25□□□□□ -1.73
SS18-221ENST00000582448 C10orf95Q9H7T3 257 aa4.25□□□□□ -1.73
SS18-221ENST00000582448 TNP1P09430 55 aa4.22□□□□□ -1.73
SS18-221ENST00000582448 KRTAP5-5Q701N2 237 aaPredicted RBP4.22□□□□□ -1.73
SS18-221ENST00000582448 PRO2289Q9P1D8 64 aa4.22□□□□□ -1.73
SS18-221ENST00000582448 KRTAP8-1Q8IUC2 63 aa4.18□□□□□ -1.74
SS18-221ENST00000582448 SPRR2DP22532 72 aa4.17□□□□□ -1.74
SS18-221ENST00000582448 PP632Q6XCG6 107 aa4.15□□□□□ -1.75
SS18-221ENST00000582448 MT1XP80297 61 aa4.11□□□□□ -1.75
SS18-221ENST00000582448 KRTAP5-2Q701N4 177 aa4.05□□□□□ -1.76
SS18-221ENST00000582448 GPR98Q8WXG9 6306 aa3.93□□□□□ -1.78
SS18-221ENST00000582448 LCE1CQ5T751 118 aa3.92□□□□□ -1.78
SS18-221ENST00000582448 LCE1BQ5T7P3 118 aa3.92□□□□□ -1.78
SS18-221ENST00000582448 LCE3DQ9BYE3 92 aa3.92□□□□□ -1.78
SS18-221ENST00000582448 DSTQ03001 7570 aaKnown RBP3.87□□□□□ -1.79
SS18-221ENST00000582448 KRTAP12-3P60328 96 aa3.83□□□□□ -1.8
SS18-221ENST00000582448 KRTAP19-5Q3LI72 72 aa3.76□□□□□ -1.81
SS18-221ENST00000582448 MT4P47944 62 aa3.7□□□□□ -1.82
SS18-221ENST00000582448 KRTAP19-3Q7Z4W3 81 aa3.68□□□□□ -1.82
SS18-221ENST00000582448 KRTAP19-7Q3SYF9 63 aa3.65□□□□□ -1.83
SS18-221ENST00000582448 MT1EP04732 61 aa3.64□□□□□ -1.83
SS18-221ENST00000582448 LUZP6Q538Z0 58 aa3.63□□□□□ -1.83
SS18-221ENST00000582448 KRTAP5-10Q6L8G5 202 aa3.59□□□□□ -1.83
SS18-221ENST00000582448 HMCN1Q96RW7 5635 aa3.58□□□□□ -1.84
SS18-221ENST00000582448 SPRR5A0A1B0GTR4 108 aa3.57□□□□□ -1.84
SS18-221ENST00000582448 AHNAK2Q8IVF2 5795 aa3.56□□□□□ -1.84
SS18-221ENST00000582448 MT1GP13640 62 aa3.55□□□□□ -1.84
SS18-221ENST00000582448 MT1LQ93083 61 aa3.55□□□□□ -1.84
SS18-221ENST00000582448 KRTAP5-7Q6L8G8 165 aa3.49□□□□□ -1.85
SS18-221ENST00000582448 MT1MQ8N339 61 aa3.49□□□□□ -1.85
SS18-221ENST00000582448 KRTAP20-2Q3LI61 65 aa3.33□□□□□ -1.88
SS18-221ENST00000582448 KRTAP5-8O75690 187 aa3.28□□□□□ -1.88
SS18-221ENST00000582448 KRTAP12-4P60329 112 aa3.25□□□□□ -1.89
SS18-221ENST00000582448 MUC19Q7Z5P9 8384 aa3.24□□□□□ -1.89
SS18-221ENST00000582448 SYNE1Q8NF91 8797 aaKnown RBP3.12□□□□□ -1.91
SS18-221ENST00000582448 MT1AP04731 61 aa3.04□□□□□ -1.92
SS18-221ENST00000582448 KRTAP6-1Q3LI64 71 aa2.97□□□□□ -1.93
SS18-221ENST00000582448 MUC5BQ9HC84 5762 aaPredicted RBP2.97□□□□□ -1.93
SS18-221ENST00000582448 AHNAKQ09666 5890 aaKnown RBP2.94□□□□□ -1.94
SS18-221ENST00000582448 MUC5ACP98088 5654 aa2.94□□□□□ -1.94
SS18-221ENST00000582448 INE1O15225 51 aa2.93□□□□□ -1.94
SS18-221ENST00000582448 KRTAP6-2Q3LI66 62 aa2.87□□□□□ -1.95
SS18-221ENST00000582448 KRTAP21-2Q3LI59 83 aa2.83□□□□□ -1.96
SS18-221ENST00000582448 PRM1P04553 51 aa2.28□□□□□ -2.04
SS18-221ENST00000582448 PHGR1C9JFL3 82 aa2.15□□□□□ -2.07
SS18-221ENST00000582448 KRTAP21-1Q3LI58 79 aa1.61□□□□□ -2.15
SS18-221ENST00000582448 MUC16Q8WXI7 14507 aa1.47□□□□□ -2.17
Retrieved 78 of 20,778 RNA–protein pairs in 101 ms