RNA–Protein interactions for RNA: ENST00000575513.1

CIITA-210, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 2

Gene CIITA, Length 516 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-210ENST00000575513 KRTAP19-5Q3LI72 72 aa4.98□□□□□ -1.61
CIITA-210ENST00000575513 LCE3BQ5TA77 95 aa4.98□□□□□ -1.61
CIITA-210ENST00000575513 CDC42SE1Q9NRR8 79 aa4.96□□□□□ -1.62
CIITA-210ENST00000575513 KRTAP25-1Q3LHN0 102 aa4.94□□□□□ -1.62
CIITA-210ENST00000575513 LCE3AQ5TA76 89 aa4.94□□□□□ -1.62
CIITA-210ENST00000575513 MT1GP13640 62 aa4.91□□□□□ -1.62
CIITA-210ENST00000575513 PP632Q6XCG6 107 aa4.87□□□□□ -1.63
CIITA-210ENST00000575513 MT1LQ93083 61 aa4.84□□□□□ -1.63
CIITA-210ENST00000575513 DSTQ03001 7570 aaKnown RBP4.81□□□□□ -1.64
CIITA-210ENST00000575513 KRTAP23-1A1A580 65 aa4.8□□□□□ -1.64
CIITA-210ENST00000575513 ROMO1P60602 79 aa4.8□□□□□ -1.64
CIITA-210ENST00000575513 MT1MQ8N339 61 aa4.79□□□□□ -1.64
CIITA-210ENST00000575513 KRTAP12-3P60328 96 aa4.77□□□□□ -1.65
CIITA-210ENST00000575513 PRO0628Q9UI54 55 aa4.75□□□□□ -1.65
CIITA-210ENST00000575513 BRK1Q8WUW1 75 aa4.65□□□□□ -1.67
CIITA-210ENST00000575513 KRTAP19-4Q3LI73 84 aa4.64□□□□□ -1.67
CIITA-210ENST00000575513 KRTAP4-3Q9BYR4 195 aa4.62□□□□□ -1.67
CIITA-210ENST00000575513 LCE4AQ5TA78 99 aa4.59□□□□□ -1.67
CIITA-210ENST00000575513 KRTAP4-9Q9BYQ8 210 aa4.57□□□□□ -1.68
CIITA-210ENST00000575513 KRTAP15-1Q3LI76 137 aa4.56□□□□□ -1.68
CIITA-210ENST00000575513 KRTAP4-7Q9BYR0 210 aa4.56□□□□□ -1.68
CIITA-210ENST00000575513 KRTAP5-4Q6L8H1 288 aa4.52□□□□□ -1.69
CIITA-210ENST00000575513 LCE1DQ5T752 114 aa4.5□□□□□ -1.69
CIITA-210ENST00000575513 PMAIP1Q13794 54 aa4.46□□□□□ -1.7
CIITA-210ENST00000575513 MT4P47944 62 aa4.45□□□□□ -1.7
CIITA-210ENST00000575513 HMCN1Q96RW7 5635 aa4.44□□□□□ -1.7
CIITA-210ENST00000575513 LCE3CQ5T5A8 94 aa4.42□□□□□ -1.7
CIITA-210ENST00000575513 GPR98Q8WXG9 6306 aa4.41□□□□□ -1.7
CIITA-210ENST00000575513 KRTAP5-5Q701N2 237 aaPredicted RBP4.4□□□□□ -1.71
CIITA-210ENST00000575513 LOC100996750A0A140TA64 210 aa4.39□□□□□ -1.71
CIITA-210ENST00000575513 KRTAP4-6Q9BYQ5 205 aa4.39□□□□□ -1.71
CIITA-210ENST00000575513 H3BS24 57 aa4.35□□□□□ -1.71
CIITA-210ENST00000575513 KTN1-AS1Q86SY8 53 aa4.34□□□□□ -1.71
CIITA-210ENST00000575513 SPRR5A0A1B0GTR4 108 aa4.28□□□□□ -1.72
CIITA-210ENST00000575513 KRTAP12-4P60329 112 aa4.27□□□□□ -1.73
CIITA-210ENST00000575513 KRTAP20-2Q3LI61 65 aa4.24□□□□□ -1.73
CIITA-210ENST00000575513 AHNAK2Q8IVF2 5795 aa4.21□□□□□ -1.74
CIITA-210ENST00000575513 SYNE1Q8NF91 8797 aaKnown RBP4.19□□□□□ -1.74
CIITA-210ENST00000575513 PRAC1Q96KF2 57 aa4.17□□□□□ -1.74
CIITA-210ENST00000575513 KRTAP9-6A8MVA2 160 aa4.15□□□□□ -1.75
CIITA-210ENST00000575513 KRTAP5-10Q6L8G5 202 aa4.14□□□□□ -1.75
CIITA-210ENST00000575513 MT1AP04731 61 aa4.13□□□□□ -1.75
CIITA-210ENST00000575513 KRTAP5-3Q6L8H2 238 aa4.12□□□□□ -1.75
CIITA-210ENST00000575513 KRTAP6-1Q3LI64 71 aa4.07□□□□□ -1.76
CIITA-210ENST00000575513 KRTAP4-12Q9BQ66 201 aa4.02□□□□□ -1.77
CIITA-210ENST00000575513 KRTAP5-2Q701N4 177 aa3.99□□□□□ -1.77
CIITA-210ENST00000575513 KRTAP9-4Q9BYQ2 154 aa3.99□□□□□ -1.77
CIITA-210ENST00000575513 KRTAP5-7Q6L8G8 165 aa3.98□□□□□ -1.77
CIITA-210ENST00000575513 KRTAP6-2Q3LI66 62 aa3.87□□□□□ -1.79
CIITA-210ENST00000575513 KRTAP4-11Q9BYQ6 195 aa3.85□□□□□ -1.79
CIITA-210ENST00000575513 KRTAP9-9Q9BYP9 154 aa3.83□□□□□ -1.8
CIITA-210ENST00000575513 MT3P25713 68 aa3.79□□□□□ -1.8
CIITA-210ENST00000575513 KRTAP5-8O75690 187 aa3.71□□□□□ -1.82
CIITA-210ENST00000575513 OBSCNQ5VST9 7968 aa3.63□□□□□ -1.83
CIITA-210ENST00000575513 KRTAP5-1Q6L8H4 278 aa3.54□□□□□ -1.84
CIITA-210ENST00000575513 LUZP6Q538Z0 58 aa3.5□□□□□ -1.85
CIITA-210ENST00000575513 LCE1EQ5T753 118 aa3.48□□□□□ -1.85
CIITA-210ENST00000575513 MUC5BQ9HC84 5762 aaPredicted RBP3.48□□□□□ -1.85
CIITA-210ENST00000575513 MUC5ACP98088 5654 aa3.47□□□□□ -1.85
CIITA-210ENST00000575513 AHNAKQ09666 5890 aaKnown RBP3.43□□□□□ -1.86
CIITA-210ENST00000575513 KRTAP4-2Q9BYR5 136 aa3.43□□□□□ -1.86
CIITA-210ENST00000575513 NDUFAF8A1L188 74 aa3.41□□□□□ -1.86
CIITA-210ENST00000575513 A0A0A0MQY5 61 aa3.28□□□□□ -1.88
CIITA-210ENST00000575513 LCE3DQ9BYE3 92 aa3.24□□□□□ -1.89
CIITA-210ENST00000575513 LCE1CQ5T751 118 aa3.22□□□□□ -1.89
CIITA-210ENST00000575513 LCE1BQ5T7P3 118 aa3.22□□□□□ -1.89
CIITA-210ENST00000575513 LCE3EQ5T5B0 92 aa3.1□□□□□ -1.91
CIITA-210ENST00000575513 INE1O15225 51 aa2.97□□□□□ -1.93
CIITA-210ENST00000575513 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.96□□□□□ -1.94
CIITA-210ENST00000575513 KRTAP5-11Q6L8G4 156 aa2.9□□□□□ -1.95
CIITA-210ENST00000575513 LCE1FQ5T754 118 aa2.82□□□□□ -1.96
CIITA-210ENST00000575513 KRTAP21-2Q3LI59 83 aa2.7□□□□□ -1.98
CIITA-210ENST00000575513 PHGR1C9JFL3 82 aa2.49□□□□□ -2.01
CIITA-210ENST00000575513 PRM1P04553 51 aa2.45□□□□□ -2.02
CIITA-210ENST00000575513 KRTAP4-4Q9BYR3 166 aa2.39□□□□□ -2.03
CIITA-210ENST00000575513 MUC19Q7Z5P9 8384 aa2.25□□□□□ -2.05
CIITA-210ENST00000575513 KRTAP21-1Q3LI58 79 aa1.84□□□□□ -2.11
CIITA-210ENST00000575513 MUC16Q8WXI7 14507 aa1.63□□□□□ -2.15
Retrieved 78 of 20,778 RNA–protein pairs in 93.8 ms