RNA–Protein interactions for RNA: ENST00000574933.1

CCDC40-213, Transcript of coiled-coil domain containing 40, humanhuman

TSL 3

Gene CCDC40, Length 326 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-213ENST00000574933 KRTAP19-3Q7Z4W3 81 aa6.57□□□□□ -1.36
CCDC40-213ENST00000574933 LCE5AQ5TCM9 118 aa6.54□□□□□ -1.36
CCDC40-213ENST00000574933 PP632Q6XCG6 107 aa6.51□□□□□ -1.37
CCDC40-213ENST00000574933 MT1LQ93083 61 aa6.51□□□□□ -1.37
CCDC40-213ENST00000574933 SPRR2DP22532 72 aa6.5□□□□□ -1.37
CCDC40-213ENST00000574933 MT1GP13640 62 aa6.49□□□□□ -1.37
CCDC40-213ENST00000574933 KRTAP2-3P0C7H8 128 aa6.42□□□□□ -1.38
CCDC40-213ENST00000574933 KRTAP2-4Q9BYR9 128 aa6.42□□□□□ -1.38
CCDC40-213ENST00000574933 PMAIP1Q13794 54 aa6.39□□□□□ -1.39
CCDC40-213ENST00000574933 MT1MQ8N339 61 aa6.37□□□□□ -1.39
CCDC40-213ENST00000574933 PRO0628Q9UI54 55 aa6.37□□□□□ -1.39
CCDC40-213ENST00000574933 KRTAP19-4Q3LI73 84 aa6.32□□□□□ -1.4
CCDC40-213ENST00000574933 KRTAP15-1Q3LI76 137 aa6.31□□□□□ -1.4
CCDC40-213ENST00000574933 LCE3BQ5TA77 95 aa6.3□□□□□ -1.4
CCDC40-213ENST00000574933 KRTAP2-2Q9BYT5 123 aa6.25□□□□□ -1.41
CCDC40-213ENST00000574933 KRTAP2-1Q9BYU5 128 aa6.25□□□□□ -1.41
CCDC40-213ENST00000574933 KRTAP4-7Q9BYR0 210 aa6.17□□□□□ -1.42
CCDC40-213ENST00000574933 KRTAP4-3Q9BYR4 195 aa6.16□□□□□ -1.42
CCDC40-213ENST00000574933 GPR98Q8WXG9 6306 aa6.11□□□□□ -1.43
CCDC40-213ENST00000574933 DSTQ03001 7570 aaKnown RBP6.11□□□□□ -1.43
CCDC40-213ENST00000574933 LCE3CQ5T5A8 94 aa6.1□□□□□ -1.43
CCDC40-213ENST00000574933 PRAC1Q96KF2 57 aa6.03□□□□□ -1.44
CCDC40-213ENST00000574933 KTN1-AS1Q86SY8 53 aa5.96□□□□□ -1.46
CCDC40-213ENST00000574933 KRTAP5-4Q6L8H1 288 aa5.84□□□□□ -1.47
CCDC40-213ENST00000574933 LCE4AQ5TA78 99 aa5.83□□□□□ -1.48
CCDC40-213ENST00000574933 LOC100996750A0A140TA64 210 aa5.82□□□□□ -1.48
CCDC40-213ENST00000574933 KRTAP5-5Q701N2 237 aaPredicted RBP5.82□□□□□ -1.48
CCDC40-213ENST00000574933 KRTAP9-6A8MVA2 160 aa5.76□□□□□ -1.49
CCDC40-213ENST00000574933 KRTAP4-9Q9BYQ8 210 aa5.7□□□□□ -1.5
CCDC40-213ENST00000574933 LCE1DQ5T752 114 aa5.66□□□□□ -1.5
CCDC40-213ENST00000574933 MT4P47944 62 aa5.62□□□□□ -1.51
CCDC40-213ENST00000574933 SPRR5A0A1B0GTR4 108 aa5.57□□□□□ -1.52
CCDC40-213ENST00000574933 SVIPQ8NHG7 77 aa5.57□□□□□ -1.52
CCDC40-213ENST00000574933 MT1AP04731 61 aa5.56□□□□□ -1.52
CCDC40-213ENST00000574933 KRTAP4-6Q9BYQ5 205 aa5.55□□□□□ -1.52
CCDC40-213ENST00000574933 KRTAP12-4P60329 112 aa5.51□□□□□ -1.53
CCDC40-213ENST00000574933 HMCN1Q96RW7 5635 aa5.47□□□□□ -1.53
CCDC40-213ENST00000574933 KRTAP6-1Q3LI64 71 aa5.47□□□□□ -1.53
CCDC40-213ENST00000574933 KRTAP20-2Q3LI61 65 aa5.44□□□□□ -1.54
CCDC40-213ENST00000574933 SYNE1Q8NF91 8797 aaKnown RBP5.44□□□□□ -1.54
CCDC40-213ENST00000574933 AHNAK2Q8IVF2 5795 aa5.33□□□□□ -1.56
CCDC40-213ENST00000574933 KRTAP5-10Q6L8G5 202 aa5.32□□□□□ -1.56
CCDC40-213ENST00000574933 KRTAP9-4Q9BYQ2 154 aa5.32□□□□□ -1.56
CCDC40-213ENST00000574933 KRTAP5-3Q6L8H2 238 aa5.29□□□□□ -1.56
CCDC40-213ENST00000574933 KRTAP5-7Q6L8G8 165 aa5.21□□□□□ -1.58
CCDC40-213ENST00000574933 KRTAP5-2Q701N4 177 aa5.2□□□□□ -1.58
CCDC40-213ENST00000574933 KRTAP6-2Q3LI66 62 aa5.12□□□□□ -1.59
CCDC40-213ENST00000574933 MT3P25713 68 aa5.05□□□□□ -1.6
CCDC40-213ENST00000574933 LUZP6Q538Z0 58 aa5.02□□□□□ -1.61
CCDC40-213ENST00000574933 KRTAP4-11Q9BYQ6 195 aa4.85□□□□□ -1.63
CCDC40-213ENST00000574933 KRTAP5-8O75690 187 aa4.69□□□□□ -1.66
CCDC40-213ENST00000574933 OBSCNQ5VST9 7968 aa4.63□□□□□ -1.67
CCDC40-213ENST00000574933 AHNAKQ09666 5890 aaKnown RBP4.62□□□□□ -1.67
CCDC40-213ENST00000574933 LCE1EQ5T753 118 aa4.56□□□□□ -1.68
CCDC40-213ENST00000574933 KRTAP5-1Q6L8H4 278 aa4.56□□□□□ -1.68
CCDC40-213ENST00000574933 MUC5ACP98088 5654 aa4.55□□□□□ -1.68
CCDC40-213ENST00000574933 LCE3DQ9BYE3 92 aa4.48□□□□□ -1.69
CCDC40-213ENST00000574933 NDUFAF8A1L188 74 aa4.47□□□□□ -1.69
CCDC40-213ENST00000574933 MUC5BQ9HC84 5762 aaPredicted RBP4.46□□□□□ -1.7
CCDC40-213ENST00000574933 KRTAP9-9Q9BYP9 154 aa4.33□□□□□ -1.72
CCDC40-213ENST00000574933 LCE3EQ5T5B0 92 aa4.31□□□□□ -1.72
CCDC40-213ENST00000574933 KRTAP4-2Q9BYR5 136 aa4.25□□□□□ -1.73
CCDC40-213ENST00000574933 LCE1CQ5T751 118 aa4.22□□□□□ -1.73
CCDC40-213ENST00000574933 LCE1BQ5T7P3 118 aa4.22□□□□□ -1.73
CCDC40-213ENST00000574933 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.94□□□□□ -1.78
CCDC40-213ENST00000574933 A0A0A0MQY5 61 aa3.79□□□□□ -1.8
CCDC40-213ENST00000574933 KRTAP5-11Q6L8G4 156 aa3.79□□□□□ -1.8
CCDC40-213ENST00000574933 INE1O15225 51 aa3.73□□□□□ -1.81
CCDC40-213ENST00000574933 KRTAP21-2Q3LI59 83 aa3.62□□□□□ -1.83
CCDC40-213ENST00000574933 KRTAP4-12Q9BQ66 201 aa3.61□□□□□ -1.83
CCDC40-213ENST00000574933 LCE1FQ5T754 118 aa3.58□□□□□ -1.84
CCDC40-213ENST00000574933 PRM1P04553 51 aa3.47□□□□□ -1.85
CCDC40-213ENST00000574933 PHGR1C9JFL3 82 aa3.24□□□□□ -1.89
CCDC40-213ENST00000574933 KRTAP4-4Q9BYR3 166 aa3.18□□□□□ -1.9
CCDC40-213ENST00000574933 H3BS24 57 aa2.89□□□□□ -1.95
CCDC40-213ENST00000574933 MUC19Q7Z5P9 8384 aa2.84□□□□□ -1.96
CCDC40-213ENST00000574933 KRTAP21-1Q3LI58 79 aa2.39□□□□□ -2.03
CCDC40-213ENST00000574933 MUC16Q8WXI7 14507 aa2.1□□□□□ -2.07
Retrieved 78 of 20,778 RNA–protein pairs in 64 ms