RNA–Protein interactions for RNA: ENST00000570510.6

VPS53-207, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 570 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-207ENST00000570510 KRTAP19-3Q7Z4W3 81 aa4.2□□□□□ -1.74
VPS53-207ENST00000570510 A0A1B0GU69 56 aa4.18□□□□□ -1.74
VPS53-207ENST00000570510 CCDC179H3BU77 68 aa4.18□□□□□ -1.74
VPS53-207ENST00000570510 TMEM258P61165 79 aa4.17□□□□□ -1.74
VPS53-207ENST00000570510 SMIM26A0A096LP01 95 aa4.16□□□□□ -1.74
VPS53-207ENST00000570510 CAMK2N1Q7Z7J9 78 aa4.16□□□□□ -1.74
VPS53-207ENST00000570510 PRR15LQ9BU68 103 aa4.15□□□□□ -1.75
VPS53-207ENST00000570510 MT1EP04732 61 aa4.11□□□□□ -1.75
VPS53-207ENST00000570510 KRTAP5-3Q6L8H2 238 aa4.11□□□□□ -1.75
VPS53-207ENST00000570510 PP632Q6XCG6 107 aa4.1□□□□□ -1.75
VPS53-207ENST00000570510 LINC01558Q9Y6Z2 57 aa4.1□□□□□ -1.75
VPS53-207ENST00000570510 KRTAP19-7Q3SYF9 63 aa4.09□□□□□ -1.75
VPS53-207ENST00000570510 SPATA8Q6RVD6 105 aa4.09□□□□□ -1.75
VPS53-207ENST00000570510 A0A0D9SG42 100 aa4.07□□□□□ -1.76
VPS53-207ENST00000570510 MT1GP13640 62 aa4.07□□□□□ -1.76
VPS53-207ENST00000570510 KRTAP12-1P59990 96 aa4.07□□□□□ -1.76
VPS53-207ENST00000570510 SPINT4Q6UDR6 99 aa4.05□□□□□ -1.76
VPS53-207ENST00000570510 UQCR11O14957 56 aa4.01□□□□□ -1.77
VPS53-207ENST00000570510 KRTAP5-4Q6L8H1 288 aa4.01□□□□□ -1.77
VPS53-207ENST00000570510 V9GYY9 64 aa4□□□□□ -1.77
VPS53-207ENST00000570510 MT1MQ8N339 61 aa3.95□□□□□ -1.78
VPS53-207ENST00000570510 A8MU10 97 aa3.93□□□□□ -1.78
VPS53-207ENST00000570510 TNP1P09430 55 aa3.92□□□□□ -1.78
VPS53-207ENST00000570510 KRTAP19-5Q3LI72 72 aa3.92□□□□□ -1.78
VPS53-207ENST00000570510 Q1T7F1 81 aa3.91□□□□□ -1.78
VPS53-207ENST00000570510 KRTAP4-3Q9BYR4 195 aa3.88□□□□□ -1.79
VPS53-207ENST00000570510 K7ERS5 55 aa3.87□□□□□ -1.79
VPS53-207ENST00000570510 MIR22HGQ0VDD5 57 aa3.87□□□□□ -1.79
VPS53-207ENST00000570510 KRTAP20-2Q3LI61 65 aa3.87□□□□□ -1.79
VPS53-207ENST00000570510 RPS28P62857 69 aaKnown RBP3.85□□□□□ -1.79
VPS53-207ENST00000570510 MT1LQ93083 61 aa3.85□□□□□ -1.79
VPS53-207ENST00000570510 C10orf95Q9H7T3 257 aa3.85□□□□□ -1.79
VPS53-207ENST00000570510 KRTAP12-4P60329 112 aa3.79□□□□□ -1.8
VPS53-207ENST00000570510 KRTAP25-1Q3LHN0 102 aa3.79□□□□□ -1.8
VPS53-207ENST00000570510 PSPHP1O15172 72 aa3.77□□□□□ -1.81
VPS53-207ENST00000570510 LCE3AQ5TA76 89 aa3.75□□□□□ -1.81
VPS53-207ENST00000570510 AHNAKQ09666 5890 aaKnown RBP3.72□□□□□ -1.81
VPS53-207ENST00000570510 A6NED7 52 aa3.7□□□□□ -1.82
VPS53-207ENST00000570510 KRTAP12-3P60328 96 aa3.68□□□□□ -1.82
VPS53-207ENST00000570510 MUC5ACP98088 5654 aa3.66□□□□□ -1.82
VPS53-207ENST00000570510 KRTAP5-5Q701N2 237 aaPredicted RBP3.62□□□□□ -1.83
VPS53-207ENST00000570510 CDC42SE1Q9NRR8 79 aa3.62□□□□□ -1.83
VPS53-207ENST00000570510 PRAC1Q96KF2 57 aa3.61□□□□□ -1.83
VPS53-207ENST00000570510 MUC5BQ9HC84 5762 aaPredicted RBP3.61□□□□□ -1.83
VPS53-207ENST00000570510 SYNE1Q8NF91 8797 aaKnown RBP3.58□□□□□ -1.84
VPS53-207ENST00000570510 KRTAP5-8O75690 187 aa3.56□□□□□ -1.84
VPS53-207ENST00000570510 ROMO1P60602 79 aa3.55□□□□□ -1.84
VPS53-207ENST00000570510 MT3P25713 68 aa3.49□□□□□ -1.85
VPS53-207ENST00000570510 OBSCNQ5VST9 7968 aa3.45□□□□□ -1.86
VPS53-207ENST00000570510 NDUFAF8A1L188 74 aa3.41□□□□□ -1.86
VPS53-207ENST00000570510 KRTAP5-2Q701N4 177 aa3.41□□□□□ -1.86
VPS53-207ENST00000570510 LCE3CQ5T5A8 94 aa3.4□□□□□ -1.87
VPS53-207ENST00000570510 KRTAP6-1Q3LI64 71 aa3.28□□□□□ -1.88
VPS53-207ENST00000570510 MT1AP04731 61 aa3.27□□□□□ -1.89
VPS53-207ENST00000570510 KRTAP6-2Q3LI66 62 aa3.26□□□□□ -1.89
VPS53-207ENST00000570510 BRK1Q8WUW1 75 aa3.25□□□□□ -1.89
VPS53-207ENST00000570510 KRTAP5-1Q6L8H4 278 aa3.17□□□□□ -1.9
VPS53-207ENST00000570510 LCE1FQ5T754 118 aa3.14□□□□□ -1.91
VPS53-207ENST00000570510 KRTAP9-6A8MVA2 160 aa3.11□□□□□ -1.91
VPS53-207ENST00000570510 PMAIP1Q13794 54 aa3.11□□□□□ -1.91
VPS53-207ENST00000570510 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.1□□□□□ -1.91
VPS53-207ENST00000570510 KRTAP5-11Q6L8G4 156 aa3.06□□□□□ -1.92
VPS53-207ENST00000570510 PRO0628Q9UI54 55 aa2.99□□□□□ -1.93
VPS53-207ENST00000570510 LCE1EQ5T753 118 aa2.9□□□□□ -1.95
VPS53-207ENST00000570510 LCE1BQ5T7P3 118 aa2.84□□□□□ -1.95
VPS53-207ENST00000570510 KTN1-AS1Q86SY8 53 aa2.83□□□□□ -1.96
VPS53-207ENST00000570510 LCE1CQ5T751 118 aa2.68□□□□□ -1.98
VPS53-207ENST00000570510 LCE3EQ5T5B0 92 aa2.65□□□□□ -1.99
VPS53-207ENST00000570510 PHGR1C9JFL3 82 aa2.59□□□□□ -1.99
VPS53-207ENST00000570510 LUZP6Q538Z0 58 aa2.58□□□□□ -2
VPS53-207ENST00000570510 KRTAP4-4Q9BYR3 166 aa2.57□□□□□ -2
VPS53-207ENST00000570510 LCE3DQ9BYE3 92 aa2.49□□□□□ -2.01
VPS53-207ENST00000570510 MUC19Q7Z5P9 8384 aa2.17□□□□□ -2.06
VPS53-207ENST00000570510 KRTAP21-2Q3LI59 83 aa2.14□□□□□ -2.07
VPS53-207ENST00000570510 KRTAP21-1Q3LI58 79 aa1.97□□□□□ -2.09
VPS53-207ENST00000570510 INE1O15225 51 aa1.79□□□□□ -2.12
VPS53-207ENST00000570510 PRM1P04553 51 aa1.75□□□□□ -2.13
VPS53-207ENST00000570510 MUC16Q8WXI7 14507 aa1.49□□□□□ -2.17
Retrieved 78 of 20,778 RNA–protein pairs in 53.4 ms