RNA–Protein interactions for RNA: ENST00000569916.1

CNOT1-220, Transcript of CCR4-NOT transcription complex subunit 1, humanhuman

TSL 3

Gene CNOT1, Length 599 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CNOT1-220ENST00000569916 PRR15LQ9BU68 103 aa4.99□□□□□ -1.61
CNOT1-220ENST00000569916 LCE5AQ5TCM9 118 aa4.96□□□□□ -1.62
CNOT1-220ENST00000569916 LCE1DQ5T752 114 aa4.93□□□□□ -1.62
CNOT1-220ENST00000569916 KRTAP2-2Q9BYT5 123 aa4.92□□□□□ -1.62
CNOT1-220ENST00000569916 KRTAP2-1Q9BYU5 128 aa4.92□□□□□ -1.62
CNOT1-220ENST00000569916 A8MU10 97 aa4.91□□□□□ -1.62
CNOT1-220ENST00000569916 KRTAP19-7Q3SYF9 63 aa4.91□□□□□ -1.62
CNOT1-220ENST00000569916 A6NED7 52 aa4.88□□□□□ -1.63
CNOT1-220ENST00000569916 CDC42SE1Q9NRR8 79 aa4.88□□□□□ -1.63
CNOT1-220ENST00000569916 MT1EP04732 61 aa4.86□□□□□ -1.63
CNOT1-220ENST00000569916 KRTAP19-3Q7Z4W3 81 aa4.8□□□□□ -1.64
CNOT1-220ENST00000569916 KRTAP19-5Q3LI72 72 aa4.79□□□□□ -1.64
CNOT1-220ENST00000569916 C10orf95Q9H7T3 257 aa4.77□□□□□ -1.65
CNOT1-220ENST00000569916 UQCR11O14957 56 aa4.75□□□□□ -1.65
CNOT1-220ENST00000569916 TNP1P09430 55 aa4.72□□□□□ -1.65
CNOT1-220ENST00000569916 PMAIP1Q13794 54 aa4.72□□□□□ -1.65
CNOT1-220ENST00000569916 DSTQ03001 7570 aaKnown RBP4.71□□□□□ -1.65
CNOT1-220ENST00000569916 LCE3AQ5TA76 89 aa4.71□□□□□ -1.66
CNOT1-220ENST00000569916 MIR22HGQ0VDD5 57 aa4.7□□□□□ -1.66
CNOT1-220ENST00000569916 KRTAP4-9Q9BYQ8 210 aa4.69□□□□□ -1.66
CNOT1-220ENST00000569916 MT1GP13640 62 aa4.68□□□□□ -1.66
CNOT1-220ENST00000569916 KRTAP4-7Q9BYR0 210 aa4.68□□□□□ -1.66
CNOT1-220ENST00000569916 PRAC1Q96KF2 57 aa4.66□□□□□ -1.66
CNOT1-220ENST00000569916 KTN1-AS1Q86SY8 53 aa4.65□□□□□ -1.67
CNOT1-220ENST00000569916 MT1LQ93083 61 aa4.65□□□□□ -1.67
CNOT1-220ENST00000569916 PP632Q6XCG6 107 aa4.63□□□□□ -1.67
CNOT1-220ENST00000569916 MT1MQ8N339 61 aa4.62□□□□□ -1.67
CNOT1-220ENST00000569916 KRTAP4-11Q9BYQ6 195 aa4.6□□□□□ -1.67
CNOT1-220ENST00000569916 KRTAP12-3P60328 96 aa4.52□□□□□ -1.69
CNOT1-220ENST00000569916 KRTAP4-3Q9BYR4 195 aa4.51□□□□□ -1.69
CNOT1-220ENST00000569916 KRTAP25-1Q3LHN0 102 aa4.49□□□□□ -1.69
CNOT1-220ENST00000569916 K7ERS5 55 aa4.48□□□□□ -1.69
CNOT1-220ENST00000569916 NDUFAF8A1L188 74 aa4.43□□□□□ -1.7
CNOT1-220ENST00000569916 KRTAP4-2Q9BYR5 136 aa4.42□□□□□ -1.7
CNOT1-220ENST00000569916 KRTAP5-4Q6L8H1 288 aa4.38□□□□□ -1.71
CNOT1-220ENST00000569916 MT4P47944 62 aa4.37□□□□□ -1.71
CNOT1-220ENST00000569916 HMCN1Q96RW7 5635 aa4.36□□□□□ -1.71
CNOT1-220ENST00000569916 GPR98Q8WXG9 6306 aa4.36□□□□□ -1.71
CNOT1-220ENST00000569916 MT3P25713 68 aa4.34□□□□□ -1.71
CNOT1-220ENST00000569916 ROMO1P60602 79 aa4.32□□□□□ -1.72
CNOT1-220ENST00000569916 KRTAP5-5Q701N2 237 aaPredicted RBP4.25□□□□□ -1.73
CNOT1-220ENST00000569916 AHNAK2Q8IVF2 5795 aa4.21□□□□□ -1.74
CNOT1-220ENST00000569916 LCE3CQ5T5A8 94 aa4.16□□□□□ -1.74
CNOT1-220ENST00000569916 KRTAP20-2Q3LI61 65 aa4.13□□□□□ -1.75
CNOT1-220ENST00000569916 SPRR5A0A1B0GTR4 108 aa4.1□□□□□ -1.75
CNOT1-220ENST00000569916 KRTAP5-10Q6L8G5 202 aa4.09□□□□□ -1.75
CNOT1-220ENST00000569916 SYNE1Q8NF91 8797 aaKnown RBP4.09□□□□□ -1.76
CNOT1-220ENST00000569916 KRTAP12-4P60329 112 aa4.08□□□□□ -1.76
CNOT1-220ENST00000569916 KRTAP5-3Q6L8H2 238 aa4.03□□□□□ -1.76
CNOT1-220ENST00000569916 KRTAP9-6A8MVA2 160 aa3.96□□□□□ -1.78
CNOT1-220ENST00000569916 MT1AP04731 61 aa3.96□□□□□ -1.78
CNOT1-220ENST00000569916 KRTAP6-1Q3LI64 71 aa3.94□□□□□ -1.78
CNOT1-220ENST00000569916 KRTAP5-7Q6L8G8 165 aa3.92□□□□□ -1.78
CNOT1-220ENST00000569916 KRTAP5-2Q701N4 177 aa3.86□□□□□ -1.79
CNOT1-220ENST00000569916 LCE1FQ5T754 118 aa3.75□□□□□ -1.81
CNOT1-220ENST00000569916 KRTAP6-2Q3LI66 62 aa3.74□□□□□ -1.81
CNOT1-220ENST00000569916 KRTAP5-8O75690 187 aa3.63□□□□□ -1.83
CNOT1-220ENST00000569916 OBSCNQ5VST9 7968 aa3.59□□□□□ -1.84
CNOT1-220ENST00000569916 LUZP6Q538Z0 58 aa3.54□□□□□ -1.84
CNOT1-220ENST00000569916 AHNAKQ09666 5890 aaKnown RBP3.45□□□□□ -1.86
CNOT1-220ENST00000569916 MUC5ACP98088 5654 aa3.45□□□□□ -1.86
CNOT1-220ENST00000569916 KRTAP5-1Q6L8H4 278 aa3.44□□□□□ -1.86
CNOT1-220ENST00000569916 MUC5BQ9HC84 5762 aaPredicted RBP3.43□□□□□ -1.86
CNOT1-220ENST00000569916 LCE1EQ5T753 118 aa3.4□□□□□ -1.87
CNOT1-220ENST00000569916 LCE3EQ5T5B0 92 aa3.2□□□□□ -1.9
CNOT1-220ENST00000569916 LCE1BQ5T7P3 118 aa3.09□□□□□ -1.91
CNOT1-220ENST00000569916 LCE1CQ5T751 118 aa3.07□□□□□ -1.92
CNOT1-220ENST00000569916 KRTAP5-11Q6L8G4 156 aa3.06□□□□□ -1.92
CNOT1-220ENST00000569916 INE1O15225 51 aa3.05□□□□□ -1.92
CNOT1-220ENST00000569916 LCE3DQ9BYE3 92 aa3□□□□□ -1.93
CNOT1-220ENST00000569916 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.98□□□□□ -1.93
CNOT1-220ENST00000569916 KRTAP21-2Q3LI59 83 aa2.6□□□□□ -1.99
CNOT1-220ENST00000569916 KRTAP4-4Q9BYR3 166 aa2.44□□□□□ -2.02
CNOT1-220ENST00000569916 PHGR1C9JFL3 82 aa2.4□□□□□ -2.03
CNOT1-220ENST00000569916 PRM1P04553 51 aa2.25□□□□□ -2.05
CNOT1-220ENST00000569916 MUC19Q7Z5P9 8384 aa2.21□□□□□ -2.06
CNOT1-220ENST00000569916 KRTAP21-1Q3LI58 79 aa1.79□□□□□ -2.12
CNOT1-220ENST00000569916 MUC16Q8WXI7 14507 aa1.63□□□□□ -2.15
Retrieved 78 of 20,778 RNA–protein pairs in 77.4 ms