RNA–Protein interactions for RNA: ENST00000568472.6

CLN3-234, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 1,011 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-234ENST00000568472 LCE5AQ5TCM9 118 aa7.96□□□□□ -1.14
CLN3-234ENST00000568472 KRTAP23-1A1A580 65 aa7.93□□□□□ -1.14
CLN3-234ENST00000568472 ROMO1P60602 79 aa7.93□□□□□ -1.14
CLN3-234ENST00000568472 MT1GP13640 62 aa7.89□□□□□ -1.15
CLN3-234ENST00000568472 KRTAP12-3P60328 96 aa7.88□□□□□ -1.15
CLN3-234ENST00000568472 PP632Q6XCG6 107 aa7.86□□□□□ -1.15
CLN3-234ENST00000568472 MT1LQ93083 61 aa7.84□□□□□ -1.15
CLN3-234ENST00000568472 KRTAP2-2Q9BYT5 123 aa7.83□□□□□ -1.16
CLN3-234ENST00000568472 KRTAP2-1Q9BYU5 128 aa7.83□□□□□ -1.16
CLN3-234ENST00000568472 LCE3BQ5TA77 95 aa7.82□□□□□ -1.16
CLN3-234ENST00000568472 BRK1Q8WUW1 75 aa7.71□□□□□ -1.18
CLN3-234ENST00000568472 MT1MQ8N339 61 aa7.7□□□□□ -1.18
CLN3-234ENST00000568472 KRTAP19-4Q3LI73 84 aa7.61□□□□□ -1.19
CLN3-234ENST00000568472 DSTQ03001 7570 aaKnown RBP7.59□□□□□ -1.19
CLN3-234ENST00000568472 KRTAP15-1Q3LI76 137 aa7.52□□□□□ -1.21
CLN3-234ENST00000568472 KRTAP4-3Q9BYR4 195 aa7.44□□□□□ -1.22
CLN3-234ENST00000568472 KRTAP4-7Q9BYR0 210 aa7.41□□□□□ -1.22
CLN3-234ENST00000568472 PMAIP1Q13794 54 aa7.31□□□□□ -1.24
CLN3-234ENST00000568472 LCE3CQ5T5A8 94 aa7.3□□□□□ -1.24
CLN3-234ENST00000568472 LCE4AQ5TA78 99 aa7.21□□□□□ -1.26
CLN3-234ENST00000568472 KRTAP5-4Q6L8H1 288 aa7.13□□□□□ -1.27
CLN3-234ENST00000568472 PRO0628Q9UI54 55 aa7.13□□□□□ -1.27
CLN3-234ENST00000568472 KRTAP4-9Q9BYQ8 210 aa7.1□□□□□ -1.27
CLN3-234ENST00000568472 LCE1DQ5T752 114 aa7.03□□□□□ -1.28
CLN3-234ENST00000568472 KRTAP5-5Q701N2 237 aaPredicted RBP7.03□□□□□ -1.28
CLN3-234ENST00000568472 LOC100996750A0A140TA64 210 aa7□□□□□ -1.29
CLN3-234ENST00000568472 MT4P47944 62 aa6.99□□□□□ -1.29
CLN3-234ENST00000568472 HMCN1Q96RW7 5635 aa6.9□□□□□ -1.3
CLN3-234ENST00000568472 PRAC1Q96KF2 57 aa6.84□□□□□ -1.31
CLN3-234ENST00000568472 KRTAP4-6Q9BYQ5 205 aa6.83□□□□□ -1.32
CLN3-234ENST00000568472 KRTAP12-4P60329 112 aa6.82□□□□□ -1.32
CLN3-234ENST00000568472 KRTAP9-6A8MVA2 160 aa6.8□□□□□ -1.32
CLN3-234ENST00000568472 SPRR5A0A1B0GTR4 108 aa6.76□□□□□ -1.33
CLN3-234ENST00000568472 KTN1-AS1Q86SY8 53 aa6.71□□□□□ -1.34
CLN3-234ENST00000568472 MT1AP04731 61 aa6.69□□□□□ -1.34
CLN3-234ENST00000568472 KRTAP20-2Q3LI61 65 aa6.67□□□□□ -1.34
CLN3-234ENST00000568472 SYNE1Q8NF91 8797 aaKnown RBP6.6□□□□□ -1.35
CLN3-234ENST00000568472 KRTAP6-1Q3LI64 71 aa6.58□□□□□ -1.36
CLN3-234ENST00000568472 GPR98Q8WXG9 6306 aa6.58□□□□□ -1.36
CLN3-234ENST00000568472 AHNAK2Q8IVF2 5795 aa6.5□□□□□ -1.37
CLN3-234ENST00000568472 KRTAP5-3Q6L8H2 238 aa6.46□□□□□ -1.38
CLN3-234ENST00000568472 KRTAP9-4Q9BYQ2 154 aa6.44□□□□□ -1.38
CLN3-234ENST00000568472 SVIPQ8NHG7 77 aa6.35□□□□□ -1.39
CLN3-234ENST00000568472 KRTAP5-10Q6L8G5 202 aa6.32□□□□□ -1.4
CLN3-234ENST00000568472 KRTAP5-2Q701N4 177 aa6.31□□□□□ -1.4
CLN3-234ENST00000568472 KRTAP6-2Q3LI66 62 aa6.23□□□□□ -1.41
CLN3-234ENST00000568472 MT3P25713 68 aa6.15□□□□□ -1.42
CLN3-234ENST00000568472 KRTAP5-7Q6L8G8 165 aa6.04□□□□□ -1.44
CLN3-234ENST00000568472 KRTAP4-11Q9BYQ6 195 aa6.01□□□□□ -1.45
CLN3-234ENST00000568472 LUZP6Q538Z0 58 aa5.86□□□□□ -1.47
CLN3-234ENST00000568472 KRTAP5-8O75690 187 aa5.77□□□□□ -1.49
CLN3-234ENST00000568472 OBSCNQ5VST9 7968 aa5.75□□□□□ -1.49
CLN3-234ENST00000568472 LCE1EQ5T753 118 aa5.57□□□□□ -1.52
CLN3-234ENST00000568472 KRTAP5-1Q6L8H4 278 aa5.57□□□□□ -1.52
CLN3-234ENST00000568472 KRTAP9-9Q9BYP9 154 aa5.45□□□□□ -1.54
CLN3-234ENST00000568472 MUC5ACP98088 5654 aa5.42□□□□□ -1.54
CLN3-234ENST00000568472 LCE3DQ9BYE3 92 aa5.37□□□□□ -1.55
CLN3-234ENST00000568472 MUC5BQ9HC84 5762 aaPredicted RBP5.29□□□□□ -1.56
CLN3-234ENST00000568472 AHNAKQ09666 5890 aaKnown RBP5.27□□□□□ -1.57
CLN3-234ENST00000568472 LCE1CQ5T751 118 aa5.14□□□□□ -1.59
CLN3-234ENST00000568472 LCE1BQ5T7P3 118 aa5.14□□□□□ -1.59
CLN3-234ENST00000568472 KRTAP4-2Q9BYR5 136 aa5.13□□□□□ -1.59
CLN3-234ENST00000568472 LCE3EQ5T5B0 92 aa5.12□□□□□ -1.59
CLN3-234ENST00000568472 NDUFAF8A1L188 74 aa5.01□□□□□ -1.61
CLN3-234ENST00000568472 KRTAP5-6Q6L8G9 129 aaPredicted RBP4.73□□□□□ -1.65
CLN3-234ENST00000568472 KRTAP5-11Q6L8G4 156 aa4.6□□□□□ -1.67
CLN3-234ENST00000568472 KRTAP4-12Q9BQ66 201 aa4.46□□□□□ -1.7
CLN3-234ENST00000568472 LCE1FQ5T754 118 aa4.43□□□□□ -1.7
CLN3-234ENST00000568472 KRTAP21-2Q3LI59 83 aa4.35□□□□□ -1.71
CLN3-234ENST00000568472 A0A0A0MQY5 61 aa4.25□□□□□ -1.73
CLN3-234ENST00000568472 INE1O15225 51 aa4.19□□□□□ -1.74
CLN3-234ENST00000568472 PRM1P04553 51 aa4.03□□□□□ -1.76
CLN3-234ENST00000568472 H3BS24 57 aa3.99□□□□□ -1.77
CLN3-234ENST00000568472 PHGR1C9JFL3 82 aa3.96□□□□□ -1.78
CLN3-234ENST00000568472 KRTAP4-4Q9BYR3 166 aa3.86□□□□□ -1.79
CLN3-234ENST00000568472 MUC19Q7Z5P9 8384 aa3.52□□□□□ -1.85
CLN3-234ENST00000568472 KRTAP21-1Q3LI58 79 aa2.82□□□□□ -1.96
CLN3-234ENST00000568472 MUC16Q8WXI7 14507 aa2.5□□□□□ -2.01
Retrieved 78 of 20,778 RNA–protein pairs in 103.2 ms