RNA–Protein interactions for RNA: ENST00000567963.6

CLN3-229, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,452 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-229ENST00000567963 MT1GP13640 62 aa5.83□□□□□ -1.48
CLN3-229ENST00000567963 GPR98Q8WXG9 6306 aa5.81□□□□□ -1.48
CLN3-229ENST00000567963 PP632Q6XCG6 107 aa5.77□□□□□ -1.49
CLN3-229ENST00000567963 CDC42SE1Q9NRR8 79 aa5.77□□□□□ -1.49
CLN3-229ENST00000567963 LCE1DQ5T752 114 aa5.76□□□□□ -1.49
CLN3-229ENST00000567963 MT1MQ8N339 61 aa5.72□□□□□ -1.49
CLN3-229ENST00000567963 LCE4AQ5TA78 99 aa5.71□□□□□ -1.5
CLN3-229ENST00000567963 MT1LQ93083 61 aa5.71□□□□□ -1.5
CLN3-229ENST00000567963 MT4P47944 62 aa5.66□□□□□ -1.5
CLN3-229ENST00000567963 K7ERS5 55 aa5.65□□□□□ -1.5
CLN3-229ENST00000567963 HMCN1Q96RW7 5635 aa5.64□□□□□ -1.51
CLN3-229ENST00000567963 LCE3AQ5TA76 89 aa5.62□□□□□ -1.51
CLN3-229ENST00000567963 C10orf95Q9H7T3 257 aa5.62□□□□□ -1.51
CLN3-229ENST00000567963 KRTAP4-3Q9BYR4 195 aa5.6□□□□□ -1.51
CLN3-229ENST00000567963 BRK1Q8WUW1 75 aa5.59□□□□□ -1.51
CLN3-229ENST00000567963 TNP1P09430 55 aa5.58□□□□□ -1.52
CLN3-229ENST00000567963 KRTAP5-4Q6L8H1 288 aa5.58□□□□□ -1.52
CLN3-229ENST00000567963 KRTAP4-6Q9BYQ5 205 aa5.51□□□□□ -1.53
CLN3-229ENST00000567963 AHNAK2Q8IVF2 5795 aa5.46□□□□□ -1.54
CLN3-229ENST00000567963 KRTAP5-10Q6L8G5 202 aa5.45□□□□□ -1.54
CLN3-229ENST00000567963 KRTAP4-7Q9BYR0 210 aa5.43□□□□□ -1.54
CLN3-229ENST00000567963 KRTAP12-3P60328 96 aa5.4□□□□□ -1.54
CLN3-229ENST00000567963 ROMO1P60602 79 aa5.4□□□□□ -1.54
CLN3-229ENST00000567963 KRTAP25-1Q3LHN0 102 aa5.39□□□□□ -1.55
CLN3-229ENST00000567963 PRO0628Q9UI54 55 aa5.36□□□□□ -1.55
CLN3-229ENST00000567963 KRTAP5-3Q6L8H2 238 aa5.28□□□□□ -1.56
CLN3-229ENST00000567963 KRTAP5-5Q701N2 237 aaPredicted RBP5.28□□□□□ -1.56
CLN3-229ENST00000567963 PMAIP1Q13794 54 aa5.27□□□□□ -1.57
CLN3-229ENST00000567963 KRTAP20-2Q3LI61 65 aa5.26□□□□□ -1.57
CLN3-229ENST00000567963 KRTAP5-7Q6L8G8 165 aa5.26□□□□□ -1.57
CLN3-229ENST00000567963 KRTAP23-1A1A580 65 aa5.24□□□□□ -1.57
CLN3-229ENST00000567963 SPRR5A0A1B0GTR4 108 aa5.22□□□□□ -1.57
CLN3-229ENST00000567963 KRTAP12-4P60329 112 aa5.18□□□□□ -1.58
CLN3-229ENST00000567963 LOC100996750A0A140TA64 210 aa5.15□□□□□ -1.58
CLN3-229ENST00000567963 KRTAP19-4Q3LI73 84 aa5.1□□□□□ -1.59
CLN3-229ENST00000567963 SYNE1Q8NF91 8797 aaKnown RBP5.06□□□□□ -1.6
CLN3-229ENST00000567963 KTN1-AS1Q86SY8 53 aa5.01□□□□□ -1.61
CLN3-229ENST00000567963 KRTAP15-1Q3LI76 137 aa4.99□□□□□ -1.61
CLN3-229ENST00000567963 PRAC1Q96KF2 57 aa4.97□□□□□ -1.61
CLN3-229ENST00000567963 LCE3CQ5T5A8 94 aa4.96□□□□□ -1.62
CLN3-229ENST00000567963 KRTAP4-11Q9BYQ6 195 aa4.86□□□□□ -1.63
CLN3-229ENST00000567963 KRTAP5-2Q701N4 177 aa4.85□□□□□ -1.63
CLN3-229ENST00000567963 MT1AP04731 61 aa4.84□□□□□ -1.63
CLN3-229ENST00000567963 KRTAP6-1Q3LI64 71 aa4.84□□□□□ -1.63
CLN3-229ENST00000567963 KRTAP9-4Q9BYQ2 154 aa4.72□□□□□ -1.65
CLN3-229ENST00000567963 KRTAP5-8O75690 187 aa4.7□□□□□ -1.66
CLN3-229ENST00000567963 KRTAP9-6A8MVA2 160 aa4.69□□□□□ -1.66
CLN3-229ENST00000567963 KRTAP6-2Q3LI66 62 aa4.66□□□□□ -1.66
CLN3-229ENST00000567963 H3BS24 57 aa4.65□□□□□ -1.66
CLN3-229ENST00000567963 OBSCNQ5VST9 7968 aa4.62□□□□□ -1.67
CLN3-229ENST00000567963 MUC5BQ9HC84 5762 aaPredicted RBP4.53□□□□□ -1.68
CLN3-229ENST00000567963 MUC5ACP98088 5654 aa4.52□□□□□ -1.69
CLN3-229ENST00000567963 KRTAP9-9Q9BYP9 154 aa4.49□□□□□ -1.69
CLN3-229ENST00000567963 AHNAKQ09666 5890 aaKnown RBP4.48□□□□□ -1.69
CLN3-229ENST00000567963 MT3P25713 68 aa4.45□□□□□ -1.7
CLN3-229ENST00000567963 KRTAP5-1Q6L8H4 278 aa4.39□□□□□ -1.71
CLN3-229ENST00000567963 A0A0A0MQY5 61 aa4.18□□□□□ -1.74
CLN3-229ENST00000567963 LCE1EQ5T753 118 aa4.13□□□□□ -1.75
CLN3-229ENST00000567963 LUZP6Q538Z0 58 aa4.08□□□□□ -1.76
CLN3-229ENST00000567963 KRTAP4-2Q9BYR5 136 aa3.92□□□□□ -1.78
CLN3-229ENST00000567963 LCE1BQ5T7P3 118 aa3.9□□□□□ -1.79
CLN3-229ENST00000567963 LCE1CQ5T751 118 aa3.85□□□□□ -1.79
CLN3-229ENST00000567963 NDUFAF8A1L188 74 aa3.83□□□□□ -1.8
CLN3-229ENST00000567963 KRTAP4-12Q9BQ66 201 aa3.61□□□□□ -1.83
CLN3-229ENST00000567963 LCE3DQ9BYE3 92 aa3.54□□□□□ -1.84
CLN3-229ENST00000567963 KRTAP5-11Q6L8G4 156 aa3.48□□□□□ -1.85
CLN3-229ENST00000567963 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.47□□□□□ -1.85
CLN3-229ENST00000567963 LCE1FQ5T754 118 aa3.44□□□□□ -1.86
CLN3-229ENST00000567963 LCE3EQ5T5B0 92 aa3.35□□□□□ -1.87
CLN3-229ENST00000567963 INE1O15225 51 aa3.3□□□□□ -1.88
CLN3-229ENST00000567963 KRTAP21-2Q3LI59 83 aa3.2□□□□□ -1.9
CLN3-229ENST00000567963 PHGR1C9JFL3 82 aa3.17□□□□□ -1.9
CLN3-229ENST00000567963 KRTAP4-4Q9BYR3 166 aa2.95□□□□□ -1.94
CLN3-229ENST00000567963 MUC19Q7Z5P9 8384 aa2.84□□□□□ -1.96
CLN3-229ENST00000567963 PRM1P04553 51 aa2.79□□□□□ -1.96
CLN3-229ENST00000567963 KRTAP21-1Q3LI58 79 aa2.41□□□□□ -2.02
CLN3-229ENST00000567963 MUC16Q8WXI7 14507 aa2□□□□□ -2.09
Retrieved 77 of 20,778 RNA–protein pairs in 82.1 ms