RNA–Protein interactions for RNA: ENST00000567250.5

SF3B3-208, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 3

Gene SF3B3, Length 1,084 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-208ENST00000567250 C10orf95Q9H7T3 257 aa4.69□□□□□ -1.66
SF3B3-208ENST00000567250 KMT2DO14686 5537 aa4.69□□□□□ -1.66
SF3B3-208ENST00000567250 SPRR2EP22531 72 aa4.63□□□□□ -1.67
SF3B3-208ENST00000567250 SPRR2BP35325 72 aa4.63□□□□□ -1.67
SF3B3-208ENST00000567250 SPRR2AP35326 72 aa4.63□□□□□ -1.67
SF3B3-208ENST00000567250 CDC42SE1Q9NRR8 79 aa4.63□□□□□ -1.67
SF3B3-208ENST00000567250 MUC12Q9UKN1 5478 aa4.58□□□□□ -1.68
SF3B3-208ENST00000567250 NEBP20929 6669 aa4.58□□□□□ -1.68
SF3B3-208ENST00000567250 KRTAP25-1Q3LHN0 102 aa4.57□□□□□ -1.68
SF3B3-208ENST00000567250 KRTAP19-7Q3SYF9 63 aa4.54□□□□□ -1.68
SF3B3-208ENST00000567250 LCE3AQ5TA76 89 aa4.54□□□□□ -1.68
SF3B3-208ENST00000567250 KRTAP5-3Q6L8H2 238 aa4.54□□□□□ -1.68
SF3B3-208ENST00000567250 MDN1Q9NU22 5596 aa4.51□□□□□ -1.69
SF3B3-208ENST00000567250 MT1EP04732 61 aa4.5□□□□□ -1.69
SF3B3-208ENST00000567250 KRTAP19-5Q3LI72 72 aa4.5□□□□□ -1.69
SF3B3-208ENST00000567250 SPRR2DP22532 72 aa4.48□□□□□ -1.69
SF3B3-208ENST00000567250 PRO0628Q9UI54 55 aa4.48□□□□□ -1.69
SF3B3-208ENST00000567250 KRTAP20-1Q3LI63 56 aa4.47□□□□□ -1.69
SF3B3-208ENST00000567250 ROMO1P60602 79 aa4.46□□□□□ -1.7
SF3B3-208ENST00000567250 BRK1Q8WUW1 75 aa4.45□□□□□ -1.7
SF3B3-208ENST00000567250 KRTAP19-3Q7Z4W3 81 aa4.44□□□□□ -1.7
SF3B3-208ENST00000567250 KRTAP2-3P0C7H8 128 aa4.41□□□□□ -1.7
SF3B3-208ENST00000567250 KRTAP2-4Q9BYR9 128 aa4.41□□□□□ -1.7
SF3B3-208ENST00000567250 KRTAP12-3P60328 96 aa4.39□□□□□ -1.71
SF3B3-208ENST00000567250 PP632Q6XCG6 107 aa4.38□□□□□ -1.71
SF3B3-208ENST00000567250 MT1GP13640 62 aa4.36□□□□□ -1.71
SF3B3-208ENST00000567250 MT3P25713 68 aa4.36□□□□□ -1.71
SF3B3-208ENST00000567250 MT1LQ93083 61 aa4.35□□□□□ -1.71
SF3B3-208ENST00000567250 KRTAP2-2Q9BYT5 123 aa4.31□□□□□ -1.72
SF3B3-208ENST00000567250 KRTAP2-1Q9BYU5 128 aa4.29□□□□□ -1.72
SF3B3-208ENST00000567250 MT1MQ8N339 61 aa4.27□□□□□ -1.73
SF3B3-208ENST00000567250 PMAIP1Q13794 54 aa4.22□□□□□ -1.73
SF3B3-208ENST00000567250 PRAC1Q96KF2 57 aa4.16□□□□□ -1.74
SF3B3-208ENST00000567250 DSTQ03001 7570 aaKnown RBP4.12□□□□□ -1.75
SF3B3-208ENST00000567250 KTN1-AS1Q86SY8 53 aa4.12□□□□□ -1.75
SF3B3-208ENST00000567250 KRTAP4-3Q9BYR4 195 aa4.1□□□□□ -1.75
SF3B3-208ENST00000567250 LCE3CQ5T5A8 94 aa4.05□□□□□ -1.76
SF3B3-208ENST00000567250 NDUFAF8A1L188 74 aa4.04□□□□□ -1.76
SF3B3-208ENST00000567250 KRTAP5-4Q6L8H1 288 aa3.91□□□□□ -1.78
SF3B3-208ENST00000567250 LCE1FQ5T754 118 aa3.88□□□□□ -1.79
SF3B3-208ENST00000567250 KRTAP5-5Q701N2 237 aaPredicted RBP3.88□□□□□ -1.79
SF3B3-208ENST00000567250 MT4P47944 62 aa3.86□□□□□ -1.79
SF3B3-208ENST00000567250 LCE1EQ5T753 118 aa3.82□□□□□ -1.8
SF3B3-208ENST00000567250 KRTAP9-6A8MVA2 160 aa3.76□□□□□ -1.81
SF3B3-208ENST00000567250 KRTAP12-4P60329 112 aa3.76□□□□□ -1.81
SF3B3-208ENST00000567250 HMCN1Q96RW7 5635 aa3.76□□□□□ -1.81
SF3B3-208ENST00000567250 SPRR5A0A1B0GTR4 108 aa3.72□□□□□ -1.81
SF3B3-208ENST00000567250 MT1AP04731 61 aa3.72□□□□□ -1.81
SF3B3-208ENST00000567250 KRTAP20-2Q3LI61 65 aa3.69□□□□□ -1.82
SF3B3-208ENST00000567250 KRTAP5-11Q6L8G4 156 aa3.67□□□□□ -1.82
SF3B3-208ENST00000567250 KRTAP6-1Q3LI64 71 aa3.65□□□□□ -1.83
SF3B3-208ENST00000567250 SYNE1Q8NF91 8797 aaKnown RBP3.64□□□□□ -1.83
SF3B3-208ENST00000567250 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.5□□□□□ -1.85
SF3B3-208ENST00000567250 KRTAP5-2Q701N4 177 aa3.48□□□□□ -1.85
SF3B3-208ENST00000567250 AHNAK2Q8IVF2 5795 aa3.46□□□□□ -1.86
SF3B3-208ENST00000567250 KRTAP5-10Q6L8G5 202 aa3.46□□□□□ -1.86
SF3B3-208ENST00000567250 GPR98Q8WXG9 6306 aa3.45□□□□□ -1.86
SF3B3-208ENST00000567250 KRTAP6-2Q3LI66 62 aa3.44□□□□□ -1.86
SF3B3-208ENST00000567250 LUZP6Q538Z0 58 aa3.34□□□□□ -1.87
SF3B3-208ENST00000567250 KRTAP5-7Q6L8G8 165 aa3.3□□□□□ -1.88
SF3B3-208ENST00000567250 LCE3EQ5T5B0 92 aa3.29□□□□□ -1.88
SF3B3-208ENST00000567250 KRTAP5-8O75690 187 aa3.17□□□□□ -1.9
SF3B3-208ENST00000567250 OBSCNQ5VST9 7968 aa3.13□□□□□ -1.91
SF3B3-208ENST00000567250 KRTAP5-1Q6L8H4 278 aa3.06□□□□□ -1.92
SF3B3-208ENST00000567250 LCE3DQ9BYE3 92 aa2.99□□□□□ -1.93
SF3B3-208ENST00000567250 MUC5ACP98088 5654 aa2.88□□□□□ -1.95
SF3B3-208ENST00000567250 KRTAP4-4Q9BYR3 166 aa2.88□□□□□ -1.95
SF3B3-208ENST00000567250 LCE1CQ5T751 118 aa2.84□□□□□ -1.95
SF3B3-208ENST00000567250 LCE1BQ5T7P3 118 aa2.84□□□□□ -1.95
SF3B3-208ENST00000567250 MUC5BQ9HC84 5762 aaPredicted RBP2.82□□□□□ -1.96
SF3B3-208ENST00000567250 AHNAKQ09666 5890 aaKnown RBP2.72□□□□□ -1.97
SF3B3-208ENST00000567250 INE1O15225 51 aa2.7□□□□□ -1.98
SF3B3-208ENST00000567250 KRTAP21-2Q3LI59 83 aa2.39□□□□□ -2.03
SF3B3-208ENST00000567250 PRM1P04553 51 aa2.28□□□□□ -2.04
SF3B3-208ENST00000567250 PHGR1C9JFL3 82 aa2.18□□□□□ -2.06
SF3B3-208ENST00000567250 MUC19Q7Z5P9 8384 aa1.96□□□□□ -2.1
SF3B3-208ENST00000567250 KRTAP21-1Q3LI58 79 aa1.55□□□□□ -2.16
SF3B3-208ENST00000567250 MUC16Q8WXI7 14507 aa1.36□□□□□ -2.19
Retrieved 78 of 20,778 RNA–protein pairs in 80.6 ms