RNA–Protein interactions for RNA: ENST00000566703.1

RNF40-209, Transcript of ring finger protein 40, humanhuman

TSL 3

Gene RNF40, Length 808 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF40-209ENST00000566703 A0A1B0GU69 56 aa5.44□□□□□ -1.54
RNF40-209ENST00000566703 PP632Q6XCG6 107 aa5.44□□□□□ -1.54
RNF40-209ENST00000566703 UQCR11O14957 56 aa5.42□□□□□ -1.54
RNF40-209ENST00000566703 KRTAP19-5Q3LI72 72 aa5.42□□□□□ -1.54
RNF40-209ENST00000566703 SPINT4Q6UDR6 99 aa5.41□□□□□ -1.54
RNF40-209ENST00000566703 LCE1DQ5T752 114 aa5.4□□□□□ -1.54
RNF40-209ENST00000566703 GPR98Q8WXG9 6306 aa5.39□□□□□ -1.55
RNF40-209ENST00000566703 A0A1B0GU33 70 aa5.39□□□□□ -1.55
RNF40-209ENST00000566703 LCE4AQ5TA78 99 aa5.39□□□□□ -1.55
RNF40-209ENST00000566703 KRTAP12-1P59990 96 aa5.37□□□□□ -1.55
RNF40-209ENST00000566703 MIR22HGQ0VDD5 57 aa5.37□□□□□ -1.55
RNF40-209ENST00000566703 MT1MQ8N339 61 aa5.34□□□□□ -1.55
RNF40-209ENST00000566703 MT1LQ93083 61 aa5.31□□□□□ -1.56
RNF40-209ENST00000566703 MT4P47944 62 aa5.29□□□□□ -1.56
RNF40-209ENST00000566703 KRTAP5-4Q6L8H1 288 aa5.24□□□□□ -1.57
RNF40-209ENST00000566703 TNP1P09430 55 aa5.21□□□□□ -1.58
RNF40-209ENST00000566703 C10orf95Q9H7T3 257 aa5.21□□□□□ -1.58
RNF40-209ENST00000566703 LCE3AQ5TA76 89 aa5.19□□□□□ -1.58
RNF40-209ENST00000566703 KRTAP4-3Q9BYR4 195 aa5.18□□□□□ -1.58
RNF40-209ENST00000566703 HMCN1Q96RW7 5635 aa5.17□□□□□ -1.58
RNF40-209ENST00000566703 KRTAP4-6Q9BYQ5 205 aa5.14□□□□□ -1.59
RNF40-209ENST00000566703 KRTAP5-10Q6L8G5 202 aa5.13□□□□□ -1.59
RNF40-209ENST00000566703 PRAC1Q96KF2 57 aa5.13□□□□□ -1.59
RNF40-209ENST00000566703 K7ERS5 55 aa5.1□□□□□ -1.59
RNF40-209ENST00000566703 AHNAK2Q8IVF2 5795 aa5.06□□□□□ -1.6
RNF40-209ENST00000566703 KRTAP25-1Q3LHN0 102 aa5.03□□□□□ -1.6
RNF40-209ENST00000566703 KRTAP12-3P60328 96 aa5.02□□□□□ -1.61
RNF40-209ENST00000566703 KRTAP4-7Q9BYR0 210 aa5.01□□□□□ -1.61
RNF40-209ENST00000566703 KRTAP5-7Q6L8G8 165 aa4.98□□□□□ -1.61
RNF40-209ENST00000566703 KRTAP5-3Q6L8H2 238 aa4.97□□□□□ -1.61
RNF40-209ENST00000566703 SPRR5A0A1B0GTR4 108 aa4.94□□□□□ -1.62
RNF40-209ENST00000566703 KRTAP20-2Q3LI61 65 aa4.94□□□□□ -1.62
RNF40-209ENST00000566703 ROMO1P60602 79 aa4.93□□□□□ -1.62
RNF40-209ENST00000566703 KRTAP5-5Q701N2 237 aaPredicted RBP4.93□□□□□ -1.62
RNF40-209ENST00000566703 KRTAP12-4P60329 112 aa4.88□□□□□ -1.63
RNF40-209ENST00000566703 KRTAP19-4Q3LI73 84 aa4.85□□□□□ -1.63
RNF40-209ENST00000566703 H3BS24 57 aa4.75□□□□□ -1.65
RNF40-209ENST00000566703 LOC100996750A0A140TA64 210 aa4.74□□□□□ -1.65
RNF40-209ENST00000566703 KRTAP23-1A1A580 65 aa4.67□□□□□ -1.66
RNF40-209ENST00000566703 KRTAP15-1Q3LI76 137 aa4.64□□□□□ -1.67
RNF40-209ENST00000566703 SYNE1Q8NF91 8797 aaKnown RBP4.62□□□□□ -1.67
RNF40-209ENST00000566703 LCE3CQ5T5A8 94 aa4.61□□□□□ -1.67
RNF40-209ENST00000566703 KRTAP4-11Q9BYQ6 195 aa4.57□□□□□ -1.68
RNF40-209ENST00000566703 KRTAP5-2Q701N4 177 aa4.55□□□□□ -1.68
RNF40-209ENST00000566703 MT1AP04731 61 aa4.53□□□□□ -1.68
RNF40-209ENST00000566703 KRTAP6-1Q3LI64 71 aa4.49□□□□□ -1.69
RNF40-209ENST00000566703 KRTAP9-4Q9BYQ2 154 aa4.42□□□□□ -1.7
RNF40-209ENST00000566703 NDUFAF8A1L188 74 aa4.41□□□□□ -1.7
RNF40-209ENST00000566703 KRTAP5-8O75690 187 aa4.41□□□□□ -1.7
RNF40-209ENST00000566703 KRTAP6-2Q3LI66 62 aa4.33□□□□□ -1.72
RNF40-209ENST00000566703 KRTAP9-6A8MVA2 160 aa4.31□□□□□ -1.72
RNF40-209ENST00000566703 LUZP6Q538Z0 58 aa4.25□□□□□ -1.73
RNF40-209ENST00000566703 KRTAP9-9Q9BYP9 154 aa4.24□□□□□ -1.73
RNF40-209ENST00000566703 MUC5ACP98088 5654 aa4.21□□□□□ -1.73
RNF40-209ENST00000566703 AHNAKQ09666 5890 aaKnown RBP4.18□□□□□ -1.74
RNF40-209ENST00000566703 MT3P25713 68 aa4.18□□□□□ -1.74
RNF40-209ENST00000566703 MUC5BQ9HC84 5762 aaPredicted RBP4.16□□□□□ -1.74
RNF40-209ENST00000566703 A0A0A0MQY5 61 aa4.13□□□□□ -1.75
RNF40-209ENST00000566703 KRTAP5-1Q6L8H4 278 aa4.11□□□□□ -1.75
RNF40-209ENST00000566703 OBSCNQ5VST9 7968 aa4.11□□□□□ -1.75
RNF40-209ENST00000566703 LCE1EQ5T753 118 aa3.91□□□□□ -1.78
RNF40-209ENST00000566703 INE1O15225 51 aa3.83□□□□□ -1.8
RNF40-209ENST00000566703 KRTAP4-2Q9BYR5 136 aa3.67□□□□□ -1.82
RNF40-209ENST00000566703 LCE1BQ5T7P3 118 aa3.63□□□□□ -1.83
RNF40-209ENST00000566703 LCE1CQ5T751 118 aa3.61□□□□□ -1.83
RNF40-209ENST00000566703 KRTAP4-12Q9BQ66 201 aa3.36□□□□□ -1.87
RNF40-209ENST00000566703 LCE1FQ5T754 118 aa3.28□□□□□ -1.88
RNF40-209ENST00000566703 KRTAP5-11Q6L8G4 156 aa3.28□□□□□ -1.88
RNF40-209ENST00000566703 LCE3DQ9BYE3 92 aa3.28□□□□□ -1.88
RNF40-209ENST00000566703 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.27□□□□□ -1.89
RNF40-209ENST00000566703 LCE3EQ5T5B0 92 aa3.06□□□□□ -1.92
RNF40-209ENST00000566703 PHGR1C9JFL3 82 aa2.98□□□□□ -1.93
RNF40-209ENST00000566703 KRTAP21-2Q3LI59 83 aa2.97□□□□□ -1.93
RNF40-209ENST00000566703 KRTAP4-4Q9BYR3 166 aa2.71□□□□□ -1.98
RNF40-209ENST00000566703 PRM1P04553 51 aa2.54□□□□□ -2
RNF40-209ENST00000566703 MUC19Q7Z5P9 8384 aa2.53□□□□□ -2
RNF40-209ENST00000566703 KRTAP21-1Q3LI58 79 aa2.3□□□□□ -2.04
RNF40-209ENST00000566703 MUC16Q8WXI7 14507 aa1.86□□□□□ -2.11
Retrieved 78 of 20,778 RNA–protein pairs in 62.6 ms