RNA–Protein interactions for RNA: ENST00000566600.1

NME3-209, Transcript of NME/NM23 nucleoside diphosphate kinase 3, humanhuman

TSL 2

Gene NME3, Length 913 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NME3-209ENST00000566600 LCE5AQ5TCM9 118 aa9.48□□□□□ -0.89
NME3-209ENST00000566600 MT1GP13640 62 aa9.38□□□□□ -0.91
NME3-209ENST00000566600 LCE3BQ5TA77 95 aa9.37□□□□□ -0.91
NME3-209ENST00000566600 KRTAP2-2Q9BYT5 123 aa9.37□□□□□ -0.91
NME3-209ENST00000566600 KRTAP2-1Q9BYU5 128 aa9.37□□□□□ -0.91
NME3-209ENST00000566600 KRTAP12-3P60328 96 aa9.34□□□□□ -0.91
NME3-209ENST00000566600 PP632Q6XCG6 107 aa9.33□□□□□ -0.92
NME3-209ENST00000566600 ROMO1P60602 79 aa9.32□□□□□ -0.92
NME3-209ENST00000566600 MT1LQ93083 61 aa9.32□□□□□ -0.92
NME3-209ENST00000566600 KRTAP23-1A1A580 65 aa9.29□□□□□ -0.92
NME3-209ENST00000566600 MT1MQ8N339 61 aa9.19□□□□□ -0.94
NME3-209ENST00000566600 BRK1Q8WUW1 75 aa9□□□□□ -0.97
NME3-209ENST00000566600 DSTQ03001 7570 aaKnown RBP8.98□□□□□ -0.97
NME3-209ENST00000566600 KRTAP19-4Q3LI73 84 aa8.93□□□□□ -0.98
NME3-209ENST00000566600 KRTAP4-3Q9BYR4 195 aa8.9□□□□□ -0.98
NME3-209ENST00000566600 KRTAP15-1Q3LI76 137 aa8.88□□□□□ -0.99
NME3-209ENST00000566600 KRTAP4-7Q9BYR0 210 aa8.84□□□□□ -0.99
NME3-209ENST00000566600 LCE3CQ5T5A8 94 aa8.64□□□□□ -1.03
NME3-209ENST00000566600 LCE4AQ5TA78 99 aa8.61□□□□□ -1.03
NME3-209ENST00000566600 KRTAP4-9Q9BYQ8 210 aa8.55□□□□□ -1.04
NME3-209ENST00000566600 PMAIP1Q13794 54 aa8.5□□□□□ -1.05
NME3-209ENST00000566600 KRTAP5-4Q6L8H1 288 aa8.5□□□□□ -1.05
NME3-209ENST00000566600 LCE1DQ5T752 114 aa8.43□□□□□ -1.06
NME3-209ENST00000566600 MT4P47944 62 aa8.39□□□□□ -1.07
NME3-209ENST00000566600 KRTAP5-5Q701N2 237 aaPredicted RBP8.37□□□□□ -1.07
NME3-209ENST00000566600 LOC100996750A0A140TA64 210 aa8.36□□□□□ -1.07
NME3-209ENST00000566600 PRO0628Q9UI54 55 aa8.24□□□□□ -1.09
NME3-209ENST00000566600 HMCN1Q96RW7 5635 aa8.23□□□□□ -1.09
NME3-209ENST00000566600 KRTAP4-6Q9BYQ5 205 aa8.19□□□□□ -1.1
NME3-209ENST00000566600 KRTAP12-4P60329 112 aa8.1□□□□□ -1.11
NME3-209ENST00000566600 KRTAP9-6A8MVA2 160 aa8.07□□□□□ -1.12
NME3-209ENST00000566600 SPRR5A0A1B0GTR4 108 aa8.04□□□□□ -1.12
NME3-209ENST00000566600 PRAC1Q96KF2 57 aa8.01□□□□□ -1.13
NME3-209ENST00000566600 KRTAP20-2Q3LI61 65 aa7.98□□□□□ -1.13
NME3-209ENST00000566600 MT1AP04731 61 aa7.96□□□□□ -1.14
NME3-209ENST00000566600 SYNE1Q8NF91 8797 aaKnown RBP7.88□□□□□ -1.15
NME3-209ENST00000566600 KRTAP6-1Q3LI64 71 aa7.85□□□□□ -1.15
NME3-209ENST00000566600 GPR98Q8WXG9 6306 aa7.81□□□□□ -1.16
NME3-209ENST00000566600 KTN1-AS1Q86SY8 53 aa7.79□□□□□ -1.16
NME3-209ENST00000566600 AHNAK2Q8IVF2 5795 aa7.73□□□□□ -1.17
NME3-209ENST00000566600 KRTAP5-3Q6L8H2 238 aa7.72□□□□□ -1.17
NME3-209ENST00000566600 KRTAP9-4Q9BYQ2 154 aa7.65□□□□□ -1.18
NME3-209ENST00000566600 KRTAP5-10Q6L8G5 202 aa7.6□□□□□ -1.19
NME3-209ENST00000566600 KRTAP5-2Q701N4 177 aa7.52□□□□□ -1.21
NME3-209ENST00000566600 KRTAP6-2Q3LI66 62 aa7.43□□□□□ -1.22
NME3-209ENST00000566600 SVIPQ8NHG7 77 aa7.41□□□□□ -1.22
NME3-209ENST00000566600 MT3P25713 68 aa7.29□□□□□ -1.24
NME3-209ENST00000566600 KRTAP5-7Q6L8G8 165 aa7.26□□□□□ -1.25
NME3-209ENST00000566600 KRTAP4-11Q9BYQ6 195 aa7.18□□□□□ -1.26
NME3-209ENST00000566600 KRTAP5-8O75690 187 aa6.92□□□□□ -1.3
NME3-209ENST00000566600 OBSCNQ5VST9 7968 aa6.81□□□□□ -1.32
NME3-209ENST00000566600 LUZP6Q538Z0 58 aa6.81□□□□□ -1.32
NME3-209ENST00000566600 KRTAP5-1Q6L8H4 278 aa6.64□□□□□ -1.35
NME3-209ENST00000566600 LCE1EQ5T753 118 aa6.59□□□□□ -1.35
NME3-209ENST00000566600 KRTAP9-9Q9BYP9 154 aa6.52□□□□□ -1.37
NME3-209ENST00000566600 MUC5ACP98088 5654 aa6.43□□□□□ -1.38
NME3-209ENST00000566600 LCE3DQ9BYE3 92 aa6.33□□□□□ -1.4
NME3-209ENST00000566600 MUC5BQ9HC84 5762 aaPredicted RBP6.31□□□□□ -1.4
NME3-209ENST00000566600 AHNAKQ09666 5890 aaKnown RBP6.22□□□□□ -1.41
NME3-209ENST00000566600 LCE1BQ5T7P3 118 aa6.13□□□□□ -1.43
NME3-209ENST00000566600 KRTAP4-2Q9BYR5 136 aa6.12□□□□□ -1.43
NME3-209ENST00000566600 LCE1CQ5T751 118 aa6.1□□□□□ -1.43
NME3-209ENST00000566600 LCE3EQ5T5B0 92 aa6.03□□□□□ -1.44
NME3-209ENST00000566600 NDUFAF8A1L188 74 aa5.81□□□□□ -1.48
NME3-209ENST00000566600 KRTAP5-6Q6L8G9 129 aaPredicted RBP5.61□□□□□ -1.51
NME3-209ENST00000566600 KRTAP5-11Q6L8G4 156 aa5.48□□□□□ -1.53
NME3-209ENST00000566600 KRTAP4-12Q9BQ66 201 aa5.36□□□□□ -1.55
NME3-209ENST00000566600 LCE1FQ5T754 118 aa5.26□□□□□ -1.57
NME3-209ENST00000566600 KRTAP21-2Q3LI59 83 aa5.17□□□□□ -1.58
NME3-209ENST00000566600 A0A0A0MQY5 61 aa4.88□□□□□ -1.63
NME3-209ENST00000566600 INE1O15225 51 aa4.81□□□□□ -1.64
NME3-209ENST00000566600 PRM1P04553 51 aa4.76□□□□□ -1.65
NME3-209ENST00000566600 PHGR1C9JFL3 82 aa4.71□□□□□ -1.66
NME3-209ENST00000566600 KRTAP4-4Q9BYR3 166 aa4.64□□□□□ -1.67
NME3-209ENST00000566600 H3BS24 57 aa4.3□□□□□ -1.72
NME3-209ENST00000566600 MUC19Q7Z5P9 8384 aa4.18□□□□□ -1.74
NME3-209ENST00000566600 KRTAP21-1Q3LI58 79 aa3.37□□□□□ -1.87
NME3-209ENST00000566600 MUC16Q8WXI7 14507 aa3.01□□□□□ -1.93
Retrieved 78 of 20,778 RNA–protein pairs in 70.3 ms