RNA–Protein interactions for RNA: ENST00000565810.1

CDH1-208, Transcript of cadherin 1, humanhuman

TSL 3

Gene CDH1, Length 282 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH1-208ENST00000565810 PRO0628Q9UI54 55 aa2.99□□□□□ -1.93
CDH1-208ENST00000565810 SYNE2Q8WXH0 6885 aaKnown RBP2.98□□□□□ -1.93
CDH1-208ENST00000565810 LCE3AQ5TA76 89 aa2.96□□□□□ -1.94
CDH1-208ENST00000565810 KRTAP23-1A1A580 65 aa2.95□□□□□ -1.94
CDH1-208ENST00000565810 SPRR2FQ96RM1 72 aa2.95□□□□□ -1.94
CDH1-208ENST00000565810 KRTAP5-9P26371 169 aa2.94□□□□□ -1.94
CDH1-208ENST00000565810 PP632Q6XCG6 107 aa2.93□□□□□ -1.94
CDH1-208ENST00000565810 MUC12Q9UKN1 5478 aa2.91□□□□□ -1.94
CDH1-208ENST00000565810 KRTAP19-5Q3LI72 72 aa2.9□□□□□ -1.95
CDH1-208ENST00000565810 KRTAP19-7Q3SYF9 63 aa2.88□□□□□ -1.95
CDH1-208ENST00000565810 KRTAP12-3P60328 96 aa2.87□□□□□ -1.95
CDH1-208ENST00000565810 MT1EP04732 61 aa2.86□□□□□ -1.95
CDH1-208ENST00000565810 MDN1Q9NU22 5596 aa2.85□□□□□ -1.95
CDH1-208ENST00000565810 SPRR2EP22531 72 aa2.84□□□□□ -1.95
CDH1-208ENST00000565810 SPRR2BP35325 72 aa2.84□□□□□ -1.95
CDH1-208ENST00000565810 SPRR2AP35326 72 aa2.84□□□□□ -1.95
CDH1-208ENST00000565810 H3BS24 57 aa2.82□□□□□ -1.96
CDH1-208ENST00000565810 LCE1AQ5T7P2 110 aa2.82□□□□□ -1.96
CDH1-208ENST00000565810 KRTAP19-3Q7Z4W3 81 aa2.8□□□□□ -1.96
CDH1-208ENST00000565810 KTN1-AS1Q86SY8 53 aa2.8□□□□□ -1.96
CDH1-208ENST00000565810 PRAC1Q96KF2 57 aa2.78□□□□□ -1.96
CDH1-208ENST00000565810 MT1GP13640 62 aa2.77□□□□□ -1.97
CDH1-208ENST00000565810 KRTAP15-1Q3LI76 137 aa2.77□□□□□ -1.97
CDH1-208ENST00000565810 MT1LQ93083 61 aa2.77□□□□□ -1.97
CDH1-208ENST00000565810 NEBP20929 6669 aa2.76□□□□□ -1.97
CDH1-208ENST00000565810 A0A0A0MQY5 61 aa2.76□□□□□ -1.97
CDH1-208ENST00000565810 SPRR2DP22532 72 aa2.75□□□□□ -1.97
CDH1-208ENST00000565810 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.74□□□□□ -1.97
CDH1-208ENST00000565810 MT1MQ8N339 61 aa2.7□□□□□ -1.98
CDH1-208ENST00000565810 KRTAP2-3P0C7H8 128 aa2.67□□□□□ -1.98
CDH1-208ENST00000565810 KRTAP20-1Q3LI63 56 aa2.67□□□□□ -1.98
CDH1-208ENST00000565810 KRTAP2-4Q9BYR9 128 aa2.67□□□□□ -1.98
CDH1-208ENST00000565810 LCE3CQ5T5A8 94 aa2.65□□□□□ -1.99
CDH1-208ENST00000565810 KRTAP4-3Q9BYR4 195 aa2.61□□□□□ -1.99
CDH1-208ENST00000565810 KRTAP2-2Q9BYT5 123 aa2.6□□□□□ -1.99
CDH1-208ENST00000565810 KRTAP2-1Q9BYU5 128 aa2.6□□□□□ -1.99
CDH1-208ENST00000565810 DSTQ03001 7570 aaKnown RBP2.59□□□□□ -1.99
CDH1-208ENST00000565810 KRTAP5-11Q6L8G4 156 aa2.5□□□□□ -2.01
CDH1-208ENST00000565810 KRTAP9-6A8MVA2 160 aa2.46□□□□□ -2.02
CDH1-208ENST00000565810 SPRR5A0A1B0GTR4 108 aa2.45□□□□□ -2.02
CDH1-208ENST00000565810 KRTAP5-5Q701N2 237 aaPredicted RBP2.44□□□□□ -2.02
CDH1-208ENST00000565810 KRTAP5-4Q6L8H1 288 aa2.41□□□□□ -2.02
CDH1-208ENST00000565810 LUZP6Q538Z0 58 aa2.39□□□□□ -2.03
CDH1-208ENST00000565810 SYNE1Q8NF91 8797 aaKnown RBP2.39□□□□□ -2.03
CDH1-208ENST00000565810 MT4P47944 62 aa2.38□□□□□ -2.03
CDH1-208ENST00000565810 MT1AP04731 61 aa2.37□□□□□ -2.03
CDH1-208ENST00000565810 KRTAP12-4P60329 112 aa2.37□□□□□ -2.03
CDH1-208ENST00000565810 KRTAP6-1Q3LI64 71 aa2.33□□□□□ -2.04
CDH1-208ENST00000565810 KRTAP5-1Q6L8H4 278 aa2.31□□□□□ -2.04
CDH1-208ENST00000565810 HMCN1Q96RW7 5635 aa2.31□□□□□ -2.04
CDH1-208ENST00000565810 KRTAP20-2Q3LI61 65 aa2.27□□□□□ -2.05
CDH1-208ENST00000565810 LCE1EQ5T753 118 aa2.27□□□□□ -2.05
CDH1-208ENST00000565810 KRTAP4-4Q9BYR3 166 aa2.24□□□□□ -2.05
CDH1-208ENST00000565810 KRTAP6-2Q3LI66 62 aa2.19□□□□□ -2.06
CDH1-208ENST00000565810 MT3P25713 68 aa2.18□□□□□ -2.06
CDH1-208ENST00000565810 KRTAP5-2Q701N4 177 aa2.16□□□□□ -2.06
CDH1-208ENST00000565810 NDUFAF8A1L188 74 aa2.14□□□□□ -2.07
CDH1-208ENST00000565810 AHNAK2Q8IVF2 5795 aa2.12□□□□□ -2.07
CDH1-208ENST00000565810 OBSCNQ5VST9 7968 aa2.06□□□□□ -2.08
CDH1-208ENST00000565810 GPR98Q8WXG9 6306 aa2.05□□□□□ -2.08
CDH1-208ENST00000565810 KRTAP5-10Q6L8G5 202 aa2.04□□□□□ -2.08
CDH1-208ENST00000565810 LCE3DQ9BYE3 92 aa1.98□□□□□ -2.09
CDH1-208ENST00000565810 KRTAP5-8O75690 187 aa1.93□□□□□ -2.1
CDH1-208ENST00000565810 KRTAP5-7Q6L8G8 165 aa1.93□□□□□ -2.1
CDH1-208ENST00000565810 LCE3EQ5T5B0 92 aa1.91□□□□□ -2.1
CDH1-208ENST00000565810 MUC5ACP98088 5654 aa1.85□□□□□ -2.11
CDH1-208ENST00000565810 LCE1BQ5T7P3 118 aa1.81□□□□□ -2.12
CDH1-208ENST00000565810 INE1O15225 51 aa1.79□□□□□ -2.12
CDH1-208ENST00000565810 LCE1CQ5T751 118 aa1.78□□□□□ -2.12
CDH1-208ENST00000565810 MUC5BQ9HC84 5762 aaPredicted RBP1.72□□□□□ -2.13
CDH1-208ENST00000565810 AHNAKQ09666 5890 aaKnown RBP1.65□□□□□ -2.15
CDH1-208ENST00000565810 PRM1P04553 51 aa1.58□□□□□ -2.16
CDH1-208ENST00000565810 LCE1FQ5T754 118 aa1.54□□□□□ -2.16
CDH1-208ENST00000565810 KRTAP21-2Q3LI59 83 aa1.53□□□□□ -2.16
CDH1-208ENST00000565810 PHGR1C9JFL3 82 aa1.36□□□□□ -2.19
CDH1-208ENST00000565810 MUC19Q7Z5P9 8384 aa1.27□□□□□ -2.21
CDH1-208ENST00000565810 KRTAP21-1Q3LI58 79 aa0.92□□□□□ -2.26
CDH1-208ENST00000565810 MUC16Q8WXI7 14507 aa0.88□□□□□ -2.27
Retrieved 78 of 20,778 RNA–protein pairs in 59.9 ms