RNA–Protein interactions for RNA: ENST00000565379.1

NME3-208, Transcript of NME/NM23 nucleoside diphosphate kinase 3, humanhuman

TSL 2

Gene NME3, Length 911 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NME3-208ENST00000565379 LCE3AQ5TA76 89 aa9.71□□□□□ -0.86
NME3-208ENST00000565379 KRTAP19-7Q3SYF9 63 aa9.65□□□□□ -0.86
NME3-208ENST00000565379 KRTAP23-1A1A580 65 aa9.6□□□□□ -0.87
NME3-208ENST00000565379 KRTAP19-5Q3LI72 72 aa9.59□□□□□ -0.87
NME3-208ENST00000565379 MT1EP04732 61 aa9.56□□□□□ -0.88
NME3-208ENST00000565379 PP632Q6XCG6 107 aa9.4□□□□□ -0.9
NME3-208ENST00000565379 KRTAP12-3P60328 96 aa9.39□□□□□ -0.91
NME3-208ENST00000565379 LCE5AQ5TCM9 118 aa9.39□□□□□ -0.91
NME3-208ENST00000565379 KRTAP19-3Q7Z4W3 81 aa9.36□□□□□ -0.91
NME3-208ENST00000565379 GPR98Q8WXG9 6306 aa9.33□□□□□ -0.92
NME3-208ENST00000565379 DSTQ03001 7570 aaKnown RBP9.32□□□□□ -0.92
NME3-208ENST00000565379 KRTAP4-9Q9BYQ8 210 aa9.27□□□□□ -0.93
NME3-208ENST00000565379 MT1GP13640 62 aa9.25□□□□□ -0.93
NME3-208ENST00000565379 PMAIP1Q13794 54 aa9.25□□□□□ -0.93
NME3-208ENST00000565379 MT1LQ93083 61 aa9.24□□□□□ -0.93
NME3-208ENST00000565379 PRO0628Q9UI54 55 aa9.19□□□□□ -0.94
NME3-208ENST00000565379 KRTAP19-4Q3LI73 84 aa9.07□□□□□ -0.96
NME3-208ENST00000565379 MT1MQ8N339 61 aa9.04□□□□□ -0.96
NME3-208ENST00000565379 KRTAP15-1Q3LI76 137 aa9.02□□□□□ -0.97
NME3-208ENST00000565379 LCE1DQ5T752 114 aa9□□□□□ -0.97
NME3-208ENST00000565379 LCE4AQ5TA78 99 aa8.91□□□□□ -0.98
NME3-208ENST00000565379 KRTAP4-3Q9BYR4 195 aa8.91□□□□□ -0.98
NME3-208ENST00000565379 MT4P47944 62 aa8.84□□□□□ -0.99
NME3-208ENST00000565379 HMCN1Q96RW7 5635 aa8.84□□□□□ -0.99
NME3-208ENST00000565379 KRTAP4-7Q9BYR0 210 aa8.74□□□□□ -1.01
NME3-208ENST00000565379 LCE3CQ5T5A8 94 aa8.72□□□□□ -1.01
NME3-208ENST00000565379 KRTAP5-4Q6L8H1 288 aa8.65□□□□□ -1.02
NME3-208ENST00000565379 PRAC1Q96KF2 57 aa8.63□□□□□ -1.03
NME3-208ENST00000565379 AHNAK2Q8IVF2 5795 aa8.62□□□□□ -1.03
NME3-208ENST00000565379 KTN1-AS1Q86SY8 53 aa8.61□□□□□ -1.03
NME3-208ENST00000565379 KRTAP5-10Q6L8G5 202 aa8.58□□□□□ -1.04
NME3-208ENST00000565379 KRTAP4-6Q9BYQ5 205 aa8.56□□□□□ -1.04
NME3-208ENST00000565379 KRTAP5-7Q6L8G8 165 aa8.32□□□□□ -1.08
NME3-208ENST00000565379 KRTAP5-3Q6L8H2 238 aa8.29□□□□□ -1.08
NME3-208ENST00000565379 KRTAP5-5Q701N2 237 aaPredicted RBP8.26□□□□□ -1.09
NME3-208ENST00000565379 LOC100996750A0A140TA64 210 aa8.25□□□□□ -1.09
NME3-208ENST00000565379 KRTAP20-2Q3LI61 65 aa8.18□□□□□ -1.1
NME3-208ENST00000565379 SPRR5A0A1B0GTR4 108 aa8.13□□□□□ -1.11
NME3-208ENST00000565379 SVIPQ8NHG7 77 aa8.13□□□□□ -1.11
NME3-208ENST00000565379 KRTAP9-6A8MVA2 160 aa8.12□□□□□ -1.11
NME3-208ENST00000565379 KRTAP12-4P60329 112 aa8.05□□□□□ -1.12
NME3-208ENST00000565379 SYNE1Q8NF91 8797 aaKnown RBP8.04□□□□□ -1.12
NME3-208ENST00000565379 MT1AP04731 61 aa7.9□□□□□ -1.14
NME3-208ENST00000565379 KRTAP6-1Q3LI64 71 aa7.76□□□□□ -1.17
NME3-208ENST00000565379 KRTAP4-11Q9BYQ6 195 aa7.6□□□□□ -1.19
NME3-208ENST00000565379 KRTAP9-4Q9BYQ2 154 aa7.57□□□□□ -1.2
NME3-208ENST00000565379 KRTAP5-2Q701N4 177 aa7.54□□□□□ -1.2
NME3-208ENST00000565379 KRTAP5-8O75690 187 aa7.34□□□□□ -1.23
NME3-208ENST00000565379 LUZP6Q538Z0 58 aa7.34□□□□□ -1.23
NME3-208ENST00000565379 KRTAP6-2Q3LI66 62 aa7.32□□□□□ -1.24
NME3-208ENST00000565379 MT3P25713 68 aa7.23□□□□□ -1.25
NME3-208ENST00000565379 MUC5ACP98088 5654 aa7.18□□□□□ -1.26
NME3-208ENST00000565379 AHNAKQ09666 5890 aaKnown RBP7.14□□□□□ -1.27
NME3-208ENST00000565379 MUC5BQ9HC84 5762 aaPredicted RBP7.12□□□□□ -1.27
NME3-208ENST00000565379 OBSCNQ5VST9 7968 aa7.09□□□□□ -1.27
NME3-208ENST00000565379 KRTAP9-9Q9BYP9 154 aa7.06□□□□□ -1.28
NME3-208ENST00000565379 KRTAP5-1Q6L8H4 278 aa6.8□□□□□ -1.32
NME3-208ENST00000565379 LCE1EQ5T753 118 aa6.5□□□□□ -1.37
NME3-208ENST00000565379 NDUFAF8A1L188 74 aa6.48□□□□□ -1.37
NME3-208ENST00000565379 LCE3DQ9BYE3 92 aa6.44□□□□□ -1.38
NME3-208ENST00000565379 LCE3EQ5T5B0 92 aa6.18□□□□□ -1.42
NME3-208ENST00000565379 KRTAP4-2Q9BYR5 136 aa6.15□□□□□ -1.42
NME3-208ENST00000565379 LCE1BQ5T7P3 118 aa6.12□□□□□ -1.43
NME3-208ENST00000565379 LCE1CQ5T751 118 aa6.02□□□□□ -1.45
NME3-208ENST00000565379 KRTAP4-12Q9BQ66 201 aa5.66□□□□□ -1.5
NME3-208ENST00000565379 A0A0A0MQY5 61 aa5.59□□□□□ -1.51
NME3-208ENST00000565379 KRTAP5-6Q6L8G9 129 aaPredicted RBP5.57□□□□□ -1.52
NME3-208ENST00000565379 INE1O15225 51 aa5.44□□□□□ -1.54
NME3-208ENST00000565379 KRTAP5-11Q6L8G4 156 aa5.4□□□□□ -1.54
NME3-208ENST00000565379 LCE1FQ5T754 118 aa5.38□□□□□ -1.55
NME3-208ENST00000565379 KRTAP21-2Q3LI59 83 aa5.11□□□□□ -1.59
NME3-208ENST00000565379 PHGR1C9JFL3 82 aa5.02□□□□□ -1.61
NME3-208ENST00000565379 PRM1P04553 51 aa4.98□□□□□ -1.61
NME3-208ENST00000565379 KRTAP4-4Q9BYR3 166 aa4.71□□□□□ -1.66
NME3-208ENST00000565379 MUC19Q7Z5P9 8384 aa4.43□□□□□ -1.7
NME3-208ENST00000565379 H3BS24 57 aa4.25□□□□□ -1.73
NME3-208ENST00000565379 KRTAP21-1Q3LI58 79 aa3.83□□□□□ -1.8
NME3-208ENST00000565379 MUC16Q8WXI7 14507 aa3.13□□□□□ -1.91
Retrieved 78 of 20,778 RNA–protein pairs in 66.6 ms