RNA–Protein interactions for RNA: ENST00000565023.1

VPS9D1-204, Transcript of VPS9 domain containing 1, humanhuman

APPRIS ALT2 TSL 5

Gene VPS9D1, Length 775 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-204ENST00000565023 KRTAP19-3Q7Z4W3 81 aa5.02□□□□□ -1.61
VPS9D1-204ENST00000565023 LCE5AQ5TCM9 118 aa5.01□□□□□ -1.61
VPS9D1-204ENST00000565023 AHNAK2Q8IVF2 5795 aa5.01□□□□□ -1.61
VPS9D1-204ENST00000565023 HMCN1Q96RW7 5635 aa4.99□□□□□ -1.61
VPS9D1-204ENST00000565023 A6NED7 52 aa4.97□□□□□ -1.61
VPS9D1-204ENST00000565023 K7ERS5 55 aa4.97□□□□□ -1.61
VPS9D1-204ENST00000565023 KRTAP5-10Q6L8G5 202 aa4.95□□□□□ -1.62
VPS9D1-204ENST00000565023 LCE3AQ5TA76 89 aa4.93□□□□□ -1.62
VPS9D1-204ENST00000565023 LCE1DQ5T752 114 aa4.9□□□□□ -1.63
VPS9D1-204ENST00000565023 MT1GP13640 62 aa4.88□□□□□ -1.63
VPS9D1-204ENST00000565023 KRTAP25-1Q3LHN0 102 aa4.86□□□□□ -1.63
VPS9D1-204ENST00000565023 PP632Q6XCG6 107 aa4.86□□□□□ -1.63
VPS9D1-204ENST00000565023 MT1LQ93083 61 aa4.85□□□□□ -1.63
VPS9D1-204ENST00000565023 MT1MQ8N339 61 aa4.84□□□□□ -1.63
VPS9D1-204ENST00000565023 KRTAP5-7Q6L8G8 165 aa4.83□□□□□ -1.64
VPS9D1-204ENST00000565023 CDC42SE1Q9NRR8 79 aa4.8□□□□□ -1.64
VPS9D1-204ENST00000565023 KRTAP4-3Q9BYR4 195 aa4.78□□□□□ -1.64
VPS9D1-204ENST00000565023 KRTAP12-3P60328 96 aa4.75□□□□□ -1.65
VPS9D1-204ENST00000565023 KRTAP23-1A1A580 65 aa4.71□□□□□ -1.66
VPS9D1-204ENST00000565023 MT4P47944 62 aa4.71□□□□□ -1.66
VPS9D1-204ENST00000565023 ROMO1P60602 79 aa4.69□□□□□ -1.66
VPS9D1-204ENST00000565023 LCE4AQ5TA78 99 aa4.68□□□□□ -1.66
VPS9D1-204ENST00000565023 KRTAP4-7Q9BYR0 210 aa4.67□□□□□ -1.66
VPS9D1-204ENST00000565023 KRTAP5-3Q6L8H2 238 aa4.64□□□□□ -1.67
VPS9D1-204ENST00000565023 SPRR5A0A1B0GTR4 108 aa4.59□□□□□ -1.67
VPS9D1-204ENST00000565023 KRTAP5-4Q6L8H1 288 aa4.55□□□□□ -1.68
VPS9D1-204ENST00000565023 KRTAP4-6Q9BYQ5 205 aa4.55□□□□□ -1.68
VPS9D1-204ENST00000565023 KRTAP19-4Q3LI73 84 aa4.53□□□□□ -1.68
VPS9D1-204ENST00000565023 KRTAP15-1Q3LI76 137 aa4.51□□□□□ -1.69
VPS9D1-204ENST00000565023 BRK1Q8WUW1 75 aa4.51□□□□□ -1.69
VPS9D1-204ENST00000565023 LOC100996750A0A140TA64 210 aa4.42□□□□□ -1.7
VPS9D1-204ENST00000565023 LCE3CQ5T5A8 94 aa4.4□□□□□ -1.71
VPS9D1-204ENST00000565023 KRTAP5-5Q701N2 237 aaPredicted RBP4.38□□□□□ -1.71
VPS9D1-204ENST00000565023 SYNE1Q8NF91 8797 aaKnown RBP4.34□□□□□ -1.71
VPS9D1-204ENST00000565023 KRTAP20-2Q3LI61 65 aa4.34□□□□□ -1.71
VPS9D1-204ENST00000565023 KRTAP12-4P60329 112 aa4.31□□□□□ -1.72
VPS9D1-204ENST00000565023 PRO0628Q9UI54 55 aa4.3□□□□□ -1.72
VPS9D1-204ENST00000565023 AHNAKQ09666 5890 aaKnown RBP4.28□□□□□ -1.72
VPS9D1-204ENST00000565023 PMAIP1Q13794 54 aa4.27□□□□□ -1.73
VPS9D1-204ENST00000565023 MUC5ACP98088 5654 aa4.24□□□□□ -1.73
VPS9D1-204ENST00000565023 MUC5BQ9HC84 5762 aaPredicted RBP4.23□□□□□ -1.73
VPS9D1-204ENST00000565023 KRTAP9-6A8MVA2 160 aa4.16□□□□□ -1.74
VPS9D1-204ENST00000565023 MT1AP04731 61 aa4.12□□□□□ -1.75
VPS9D1-204ENST00000565023 KRTAP6-1Q3LI64 71 aa4.12□□□□□ -1.75
VPS9D1-204ENST00000565023 KRTAP4-11Q9BYQ6 195 aa4.08□□□□□ -1.76
VPS9D1-204ENST00000565023 PRAC1Q96KF2 57 aa4.04□□□□□ -1.76
VPS9D1-204ENST00000565023 KTN1-AS1Q86SY8 53 aa4.03□□□□□ -1.76
VPS9D1-204ENST00000565023 KRTAP5-8O75690 187 aa4.02□□□□□ -1.77
VPS9D1-204ENST00000565023 KRTAP5-2Q701N4 177 aa3.98□□□□□ -1.77
VPS9D1-204ENST00000565023 KRTAP9-4Q9BYQ2 154 aa3.97□□□□□ -1.77
VPS9D1-204ENST00000565023 KRTAP6-2Q3LI66 62 aa3.94□□□□□ -1.78
VPS9D1-204ENST00000565023 KRTAP9-9Q9BYP9 154 aa3.83□□□□□ -1.8
VPS9D1-204ENST00000565023 OBSCNQ5VST9 7968 aa3.81□□□□□ -1.8
VPS9D1-204ENST00000565023 SVIPQ8NHG7 77 aa3.8□□□□□ -1.8
VPS9D1-204ENST00000565023 MT3P25713 68 aa3.77□□□□□ -1.81
VPS9D1-204ENST00000565023 KRTAP5-1Q6L8H4 278 aa3.59□□□□□ -1.83
VPS9D1-204ENST00000565023 LUZP6Q538Z0 58 aa3.4□□□□□ -1.87
VPS9D1-204ENST00000565023 LCE1EQ5T753 118 aa3.4□□□□□ -1.87
VPS9D1-204ENST00000565023 LCE1BQ5T7P3 118 aa3.33□□□□□ -1.88
VPS9D1-204ENST00000565023 KRTAP4-2Q9BYR5 136 aa3.26□□□□□ -1.89
VPS9D1-204ENST00000565023 LCE3DQ9BYE3 92 aa3.21□□□□□ -1.9
VPS9D1-204ENST00000565023 LCE1CQ5T751 118 aa3.17□□□□□ -1.9
VPS9D1-204ENST00000565023 LCE3EQ5T5B0 92 aa3.05□□□□□ -1.92
VPS9D1-204ENST00000565023 NDUFAF8A1L188 74 aa3.04□□□□□ -1.92
VPS9D1-204ENST00000565023 KRTAP4-12Q9BQ66 201 aa3.03□□□□□ -1.92
VPS9D1-204ENST00000565023 KRTAP5-11Q6L8G4 156 aa2.91□□□□□ -1.94
VPS9D1-204ENST00000565023 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.89□□□□□ -1.95
VPS9D1-204ENST00000565023 PHGR1C9JFL3 82 aa2.86□□□□□ -1.95
VPS9D1-204ENST00000565023 LCE1FQ5T754 118 aa2.8□□□□□ -1.96
VPS9D1-204ENST00000565023 A0A0A0MQY5 61 aa2.69□□□□□ -1.98
VPS9D1-204ENST00000565023 KRTAP21-2Q3LI59 83 aa2.68□□□□□ -1.98
VPS9D1-204ENST00000565023 INE1O15225 51 aa2.58□□□□□ -2
VPS9D1-204ENST00000565023 KRTAP4-4Q9BYR3 166 aa2.55□□□□□ -2
VPS9D1-204ENST00000565023 MUC19Q7Z5P9 8384 aa2.41□□□□□ -2.02
VPS9D1-204ENST00000565023 PRM1P04553 51 aa2.41□□□□□ -2.02
VPS9D1-204ENST00000565023 H3BS24 57 aa2.2□□□□□ -2.06
VPS9D1-204ENST00000565023 KRTAP21-1Q3LI58 79 aa2.18□□□□□ -2.06
VPS9D1-204ENST00000565023 MUC16Q8WXI7 14507 aa1.7□□□□□ -2.14
Retrieved 78 of 20,778 RNA–protein pairs in 48.4 ms