RNA–Protein interactions for RNA: ENST00000564994.5

VPS39-208, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 629 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-208ENST00000564994 KRTAP19-3Q7Z4W3 81 aa4.01□□□□□ -1.77
VPS39-208ENST00000564994 KRTAP19-4Q3LI73 84 aa4□□□□□ -1.77
VPS39-208ENST00000564994 SPINT4Q6UDR6 99 aa4□□□□□ -1.77
VPS39-208ENST00000564994 KRTAP12-1P59990 96 aa3.99□□□□□ -1.77
VPS39-208ENST00000564994 GPR98Q8WXG9 6306 aa3.96□□□□□ -1.78
VPS39-208ENST00000564994 KRTAP19-5Q3LI72 72 aa3.95□□□□□ -1.78
VPS39-208ENST00000564994 PRO0628Q9UI54 55 aa3.95□□□□□ -1.78
VPS39-208ENST00000564994 BRK1Q8WUW1 75 aa3.92□□□□□ -1.78
VPS39-208ENST00000564994 A8MU10 97 aa3.9□□□□□ -1.79
VPS39-208ENST00000564994 PSPHP1O15172 72 aa3.9□□□□□ -1.79
VPS39-208ENST00000564994 MT1GP13640 62 aa3.9□□□□□ -1.79
VPS39-208ENST00000564994 PRR15LQ9BU68 103 aa3.9□□□□□ -1.79
VPS39-208ENST00000564994 LINC01558Q9Y6Z2 57 aa3.9□□□□□ -1.79
VPS39-208ENST00000564994 A0A1B0GU69 56 aa3.89□□□□□ -1.79
VPS39-208ENST00000564994 MT1MQ8N339 61 aa3.86□□□□□ -1.79
VPS39-208ENST00000564994 MT1LQ93083 61 aa3.85□□□□□ -1.79
VPS39-208ENST00000564994 A6NED7 52 aa3.84□□□□□ -1.79
VPS39-208ENST00000564994 PP632Q6XCG6 107 aa3.84□□□□□ -1.79
VPS39-208ENST00000564994 C10orf95Q9H7T3 257 aa3.84□□□□□ -1.79
VPS39-208ENST00000564994 LCE3AQ5TA76 89 aa3.83□□□□□ -1.8
VPS39-208ENST00000564994 HMCN1Q96RW7 5635 aa3.8□□□□□ -1.8
VPS39-208ENST00000564994 KRTAP4-3Q9BYR4 195 aa3.8□□□□□ -1.8
VPS39-208ENST00000564994 CDC42SE1Q9NRR8 79 aa3.8□□□□□ -1.8
VPS39-208ENST00000564994 TNP1P09430 55 aa3.79□□□□□ -1.8
VPS39-208ENST00000564994 KRTAP5-3Q6L8H2 238 aa3.78□□□□□ -1.8
VPS39-208ENST00000564994 MT4P47944 62 aa3.76□□□□□ -1.81
VPS39-208ENST00000564994 UQCR11O14957 56 aa3.73□□□□□ -1.81
VPS39-208ENST00000564994 PMAIP1Q13794 54 aa3.72□□□□□ -1.81
VPS39-208ENST00000564994 KRTAP5-4Q6L8H1 288 aa3.72□□□□□ -1.81
VPS39-208ENST00000564994 AHNAK2Q8IVF2 5795 aa3.68□□□□□ -1.82
VPS39-208ENST00000564994 MIR22HGQ0VDD5 57 aa3.68□□□□□ -1.82
VPS39-208ENST00000564994 KRTAP12-3P60328 96 aa3.67□□□□□ -1.82
VPS39-208ENST00000564994 KTN1-AS1Q86SY8 53 aa3.65□□□□□ -1.83
VPS39-208ENST00000564994 KRTAP5-10Q6L8G5 202 aa3.58□□□□□ -1.84
VPS39-208ENST00000564994 K7ERS5 55 aa3.57□□□□□ -1.84
VPS39-208ENST00000564994 KRTAP5-5Q701N2 237 aaPredicted RBP3.56□□□□□ -1.84
VPS39-208ENST00000564994 KRTAP25-1Q3LHN0 102 aa3.54□□□□□ -1.84
VPS39-208ENST00000564994 KRTAP20-2Q3LI61 65 aa3.51□□□□□ -1.85
VPS39-208ENST00000564994 SYNE1Q8NF91 8797 aaKnown RBP3.5□□□□□ -1.85
VPS39-208ENST00000564994 SPRR5A0A1B0GTR4 108 aa3.46□□□□□ -1.86
VPS39-208ENST00000564994 KRTAP12-4P60329 112 aa3.43□□□□□ -1.86
VPS39-208ENST00000564994 KRTAP5-7Q6L8G8 165 aa3.43□□□□□ -1.86
VPS39-208ENST00000564994 KRTAP23-1A1A580 65 aa3.4□□□□□ -1.87
VPS39-208ENST00000564994 KRTAP15-1Q3LI76 137 aa3.4□□□□□ -1.87
VPS39-208ENST00000564994 PRAC1Q96KF2 57 aa3.4□□□□□ -1.87
VPS39-208ENST00000564994 ROMO1P60602 79 aa3.38□□□□□ -1.87
VPS39-208ENST00000564994 LCE3CQ5T5A8 94 aa3.38□□□□□ -1.87
VPS39-208ENST00000564994 MT1AP04731 61 aa3.27□□□□□ -1.89
VPS39-208ENST00000564994 KRTAP6-1Q3LI64 71 aa3.27□□□□□ -1.89
VPS39-208ENST00000564994 KRTAP5-2Q701N4 177 aa3.25□□□□□ -1.89
VPS39-208ENST00000564994 KRTAP9-6A8MVA2 160 aa3.23□□□□□ -1.89
VPS39-208ENST00000564994 OBSCNQ5VST9 7968 aa3.17□□□□□ -1.9
VPS39-208ENST00000564994 KRTAP6-2Q3LI66 62 aa3.13□□□□□ -1.91
VPS39-208ENST00000564994 KRTAP5-8O75690 187 aa3.12□□□□□ -1.91
VPS39-208ENST00000564994 MUC5BQ9HC84 5762 aaPredicted RBP3.05□□□□□ -1.92
VPS39-208ENST00000564994 AHNAKQ09666 5890 aaKnown RBP3.05□□□□□ -1.92
VPS39-208ENST00000564994 MUC5ACP98088 5654 aa3.03□□□□□ -1.92
VPS39-208ENST00000564994 MT3P25713 68 aa2.98□□□□□ -1.93
VPS39-208ENST00000564994 KRTAP5-1Q6L8H4 278 aa2.93□□□□□ -1.94
VPS39-208ENST00000564994 LUZP6Q538Z0 58 aa2.87□□□□□ -1.95
VPS39-208ENST00000564994 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.85□□□□□ -1.95
VPS39-208ENST00000564994 NDUFAF8A1L188 74 aa2.84□□□□□ -1.95
VPS39-208ENST00000564994 LCE1EQ5T753 118 aa2.76□□□□□ -1.97
VPS39-208ENST00000564994 KRTAP5-11Q6L8G4 156 aa2.73□□□□□ -1.97
VPS39-208ENST00000564994 A0A0A0MQY5 61 aa2.65□□□□□ -1.99
VPS39-208ENST00000564994 LCE1BQ5T7P3 118 aa2.6□□□□□ -1.99
VPS39-208ENST00000564994 LCE1CQ5T751 118 aa2.56□□□□□ -2
VPS39-208ENST00000564994 INE1O15225 51 aa2.44□□□□□ -2.02
VPS39-208ENST00000564994 LCE3DQ9BYE3 92 aa2.41□□□□□ -2.02
VPS39-208ENST00000564994 KRTAP4-4Q9BYR3 166 aa2.35□□□□□ -2.03
VPS39-208ENST00000564994 LCE1FQ5T754 118 aa2.26□□□□□ -2.05
VPS39-208ENST00000564994 LCE3EQ5T5B0 92 aa2.25□□□□□ -2.05
VPS39-208ENST00000564994 KRTAP21-2Q3LI59 83 aa2.16□□□□□ -2.06
VPS39-208ENST00000564994 PHGR1C9JFL3 82 aa2.07□□□□□ -2.08
VPS39-208ENST00000564994 MUC19Q7Z5P9 8384 aa1.94□□□□□ -2.1
VPS39-208ENST00000564994 PRM1P04553 51 aa1.75□□□□□ -2.13
VPS39-208ENST00000564994 KRTAP21-1Q3LI58 79 aa1.56□□□□□ -2.16
VPS39-208ENST00000564994 MUC16Q8WXI7 14507 aa1.33□□□□□ -2.2
Retrieved 78 of 20,778 RNA–protein pairs in 92.7 ms