RNA–Protein interactions for RNA: ENST00000564574.5

CLN3-212, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,159 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-212ENST00000564574 KRTAP19-5Q3LI72 72 aa7.67□□□□□ -1.18
CLN3-212ENST00000564574 PP632Q6XCG6 107 aa7.62□□□□□ -1.19
CLN3-212ENST00000564574 MT1EP04732 61 aa7.61□□□□□ -1.19
CLN3-212ENST00000564574 KRTAP12-3P60328 96 aa7.54□□□□□ -1.2
CLN3-212ENST00000564574 LCE1AQ5T7P2 110 aa7.54□□□□□ -1.2
CLN3-212ENST00000564574 KRTAP2-2Q9BYT5 123 aa7.44□□□□□ -1.22
CLN3-212ENST00000564574 KRTAP2-1Q9BYU5 128 aa7.44□□□□□ -1.22
CLN3-212ENST00000564574 SPRR2DP22532 72 aa7.43□□□□□ -1.22
CLN3-212ENST00000564574 KRTAP19-3Q7Z4W3 81 aa7.42□□□□□ -1.22
CLN3-212ENST00000564574 MT1LQ93083 61 aa7.38□□□□□ -1.23
CLN3-212ENST00000564574 LCE5AQ5TCM9 118 aa7.34□□□□□ -1.23
CLN3-212ENST00000564574 MT1GP13640 62 aa7.33□□□□□ -1.24
CLN3-212ENST00000564574 KRTAP15-1Q3LI76 137 aa7.27□□□□□ -1.25
CLN3-212ENST00000564574 LCE3BQ5TA77 95 aa7.24□□□□□ -1.25
CLN3-212ENST00000564574 KTN1-AS1Q86SY8 53 aa7.24□□□□□ -1.25
CLN3-212ENST00000564574 KRTAP19-4Q3LI73 84 aa7.23□□□□□ -1.25
CLN3-212ENST00000564574 PRAC1Q96KF2 57 aa7.22□□□□□ -1.25
CLN3-212ENST00000564574 MT1MQ8N339 61 aa7.2□□□□□ -1.26
CLN3-212ENST00000564574 LCE3CQ5T5A8 94 aa7.01□□□□□ -1.29
CLN3-212ENST00000564574 KRTAP4-7Q9BYR0 210 aa7□□□□□ -1.29
CLN3-212ENST00000564574 KRTAP4-3Q9BYR4 195 aa6.95□□□□□ -1.3
CLN3-212ENST00000564574 DSTQ03001 7570 aaKnown RBP6.87□□□□□ -1.31
CLN3-212ENST00000564574 SVIPQ8NHG7 77 aa6.81□□□□□ -1.32
CLN3-212ENST00000564574 KRTAP4-9Q9BYQ8 210 aa6.79□□□□□ -1.32
CLN3-212ENST00000564574 GPR98Q8WXG9 6306 aa6.76□□□□□ -1.33
CLN3-212ENST00000564574 LCE1DQ5T752 114 aa6.61□□□□□ -1.35
CLN3-212ENST00000564574 LOC100996750A0A140TA64 210 aa6.6□□□□□ -1.35
CLN3-212ENST00000564574 KRTAP9-6A8MVA2 160 aa6.55□□□□□ -1.36
CLN3-212ENST00000564574 LCE4AQ5TA78 99 aa6.54□□□□□ -1.36
CLN3-212ENST00000564574 KRTAP5-5Q701N2 237 aaPredicted RBP6.53□□□□□ -1.36
CLN3-212ENST00000564574 HMCN1Q96RW7 5635 aa6.51□□□□□ -1.37
CLN3-212ENST00000564574 MT4P47944 62 aa6.51□□□□□ -1.37
CLN3-212ENST00000564574 SPRR5A0A1B0GTR4 108 aa6.5□□□□□ -1.37
CLN3-212ENST00000564574 KRTAP5-4Q6L8H1 288 aa6.49□□□□□ -1.37
CLN3-212ENST00000564574 AHNAK2Q8IVF2 5795 aa6.35□□□□□ -1.39
CLN3-212ENST00000564574 MT1AP04731 61 aa6.31□□□□□ -1.4
CLN3-212ENST00000564574 KRTAP4-6Q9BYQ5 205 aa6.3□□□□□ -1.4
CLN3-212ENST00000564574 KRTAP5-10Q6L8G5 202 aa6.23□□□□□ -1.41
CLN3-212ENST00000564574 KRTAP12-4P60329 112 aa6.22□□□□□ -1.41
CLN3-212ENST00000564574 SYNE1Q8NF91 8797 aaKnown RBP6.2□□□□□ -1.42
CLN3-212ENST00000564574 KRTAP6-1Q3LI64 71 aa6.19□□□□□ -1.42
CLN3-212ENST00000564574 KRTAP20-2Q3LI61 65 aa6.07□□□□□ -1.44
CLN3-212ENST00000564574 LUZP6Q538Z0 58 aa6.05□□□□□ -1.44
CLN3-212ENST00000564574 KRTAP5-3Q6L8H2 238 aa6.05□□□□□ -1.44
CLN3-212ENST00000564574 KRTAP9-4Q9BYQ2 154 aa6.02□□□□□ -1.45
CLN3-212ENST00000564574 KRTAP5-7Q6L8G8 165 aa6.01□□□□□ -1.45
CLN3-212ENST00000564574 KRTAP5-2Q701N4 177 aa5.8□□□□□ -1.48
CLN3-212ENST00000564574 KRTAP6-2Q3LI66 62 aa5.79□□□□□ -1.48
CLN3-212ENST00000564574 MT3P25713 68 aa5.75□□□□□ -1.49
CLN3-212ENST00000564574 KRTAP4-11Q9BYQ6 195 aa5.56□□□□□ -1.52
CLN3-212ENST00000564574 NDUFAF8A1L188 74 aa5.47□□□□□ -1.53
CLN3-212ENST00000564574 KRTAP5-8O75690 187 aa5.38□□□□□ -1.55
CLN3-212ENST00000564574 AHNAKQ09666 5890 aaKnown RBP5.27□□□□□ -1.57
CLN3-212ENST00000564574 MUC5BQ9HC84 5762 aaPredicted RBP5.27□□□□□ -1.57
CLN3-212ENST00000564574 OBSCNQ5VST9 7968 aa5.26□□□□□ -1.57
CLN3-212ENST00000564574 MUC5ACP98088 5654 aa5.26□□□□□ -1.57
CLN3-212ENST00000564574 LCE3DQ9BYE3 92 aa5.19□□□□□ -1.58
CLN3-212ENST00000564574 KRTAP9-9Q9BYP9 154 aa5.15□□□□□ -1.59
CLN3-212ENST00000564574 LCE1EQ5T753 118 aa5.12□□□□□ -1.59
CLN3-212ENST00000564574 KRTAP5-1Q6L8H4 278 aa5.07□□□□□ -1.6
CLN3-212ENST00000564574 LCE3EQ5T5B0 92 aa5□□□□□ -1.61
CLN3-212ENST00000564574 LCE1CQ5T751 118 aa4.75□□□□□ -1.65
CLN3-212ENST00000564574 LCE1BQ5T7P3 118 aa4.75□□□□□ -1.65
CLN3-212ENST00000564574 KRTAP4-2Q9BYR5 136 aa4.75□□□□□ -1.65
CLN3-212ENST00000564574 A0A0A0MQY5 61 aa4.74□□□□□ -1.65
CLN3-212ENST00000564574 INE1O15225 51 aa4.58□□□□□ -1.68
CLN3-212ENST00000564574 KRTAP5-6Q6L8G9 129 aaPredicted RBP4.41□□□□□ -1.7
CLN3-212ENST00000564574 KRTAP5-11Q6L8G4 156 aa4.24□□□□□ -1.73
CLN3-212ENST00000564574 KRTAP4-12Q9BQ66 201 aa4.15□□□□□ -1.75
CLN3-212ENST00000564574 PRM1P04553 51 aa4.09□□□□□ -1.75
CLN3-212ENST00000564574 KRTAP21-2Q3LI59 83 aa4.08□□□□□ -1.76
CLN3-212ENST00000564574 LCE1FQ5T754 118 aa4□□□□□ -1.77
CLN3-212ENST00000564574 H3BS24 57 aa3.87□□□□□ -1.79
CLN3-212ENST00000564574 PHGR1C9JFL3 82 aa3.65□□□□□ -1.83
CLN3-212ENST00000564574 KRTAP4-4Q9BYR3 166 aa3.6□□□□□ -1.83
CLN3-212ENST00000564574 MUC19Q7Z5P9 8384 aa3.25□□□□□ -1.89
CLN3-212ENST00000564574 KRTAP21-1Q3LI58 79 aa2.77□□□□□ -1.97
CLN3-212ENST00000564574 MUC16Q8WXI7 14507 aa2.32□□□□□ -2.04
Retrieved 78 of 20,778 RNA–protein pairs in 137.8 ms