RNA–Protein interactions for RNA: ENST00000564260.1

RNF40-206, Transcript of ring finger protein 40, humanhuman

TSL 2

Gene RNF40, Length 768 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF40-206ENST00000564260 KRTAP19-3Q7Z4W3 81 aa6.1□□□□□ -1.43
RNF40-206ENST00000564260 LCE5AQ5TCM9 118 aa6.07□□□□□ -1.44
RNF40-206ENST00000564260 ROMO1P60602 79 aa6.03□□□□□ -1.44
RNF40-206ENST00000564260 MT1GP13640 62 aa6.02□□□□□ -1.45
RNF40-206ENST00000564260 PP632Q6XCG6 107 aa6.01□□□□□ -1.45
RNF40-206ENST00000564260 KRTAP12-3P60328 96 aa5.99□□□□□ -1.45
RNF40-206ENST00000564260 MT1LQ93083 61 aa5.96□□□□□ -1.46
RNF40-206ENST00000564260 KRTAP2-2Q9BYT5 123 aa5.96□□□□□ -1.46
RNF40-206ENST00000564260 KRTAP2-1Q9BYU5 128 aa5.96□□□□□ -1.46
RNF40-206ENST00000564260 LCE3BQ5TA77 95 aa5.94□□□□□ -1.46
RNF40-206ENST00000564260 KRTAP19-4Q3LI73 84 aa5.9□□□□□ -1.46
RNF40-206ENST00000564260 MT1MQ8N339 61 aa5.86□□□□□ -1.47
RNF40-206ENST00000564260 BRK1Q8WUW1 75 aa5.83□□□□□ -1.48
RNF40-206ENST00000564260 DSTQ03001 7570 aaKnown RBP5.74□□□□□ -1.49
RNF40-206ENST00000564260 KRTAP15-1Q3LI76 137 aa5.72□□□□□ -1.49
RNF40-206ENST00000564260 KRTAP4-3Q9BYR4 195 aa5.58□□□□□ -1.52
RNF40-206ENST00000564260 KRTAP4-7Q9BYR0 210 aa5.56□□□□□ -1.52
RNF40-206ENST00000564260 LCE3CQ5T5A8 94 aa5.54□□□□□ -1.52
RNF40-206ENST00000564260 PMAIP1Q13794 54 aa5.53□□□□□ -1.52
RNF40-206ENST00000564260 LCE4AQ5TA78 99 aa5.52□□□□□ -1.53
RNF40-206ENST00000564260 KRTAP5-4Q6L8H1 288 aa5.45□□□□□ -1.54
RNF40-206ENST00000564260 H3BS24 57 aa5.43□□□□□ -1.54
RNF40-206ENST00000564260 PRO0628Q9UI54 55 aa5.43□□□□□ -1.54
RNF40-206ENST00000564260 KRTAP5-5Q701N2 237 aaPredicted RBP5.38□□□□□ -1.55
RNF40-206ENST00000564260 KRTAP4-9Q9BYQ8 210 aa5.34□□□□□ -1.55
RNF40-206ENST00000564260 LCE1DQ5T752 114 aa5.33□□□□□ -1.56
RNF40-206ENST00000564260 MT4P47944 62 aa5.27□□□□□ -1.57
RNF40-206ENST00000564260 HMCN1Q96RW7 5635 aa5.26□□□□□ -1.57
RNF40-206ENST00000564260 LOC100996750A0A140TA64 210 aa5.26□□□□□ -1.57
RNF40-206ENST00000564260 KRTAP12-4P60329 112 aa5.2□□□□□ -1.58
RNF40-206ENST00000564260 SPRR5A0A1B0GTR4 108 aa5.18□□□□□ -1.58
RNF40-206ENST00000564260 KRTAP4-6Q9BYQ5 205 aa5.16□□□□□ -1.58
RNF40-206ENST00000564260 KRTAP9-6A8MVA2 160 aa5.14□□□□□ -1.59
RNF40-206ENST00000564260 PRAC1Q96KF2 57 aa5.14□□□□□ -1.59
RNF40-206ENST00000564260 KTN1-AS1Q86SY8 53 aa5.12□□□□□ -1.59
RNF40-206ENST00000564260 MT1AP04731 61 aa5.11□□□□□ -1.59
RNF40-206ENST00000564260 KRTAP20-2Q3LI61 65 aa5.09□□□□□ -1.59
RNF40-206ENST00000564260 GPR98Q8WXG9 6306 aa5.08□□□□□ -1.6
RNF40-206ENST00000564260 SYNE1Q8NF91 8797 aaKnown RBP5.05□□□□□ -1.6
RNF40-206ENST00000564260 KRTAP6-1Q3LI64 71 aa4.99□□□□□ -1.61
RNF40-206ENST00000564260 KRTAP5-3Q6L8H2 238 aa4.93□□□□□ -1.62
RNF40-206ENST00000564260 KRTAP9-4Q9BYQ2 154 aa4.9□□□□□ -1.63
RNF40-206ENST00000564260 AHNAK2Q8IVF2 5795 aa4.88□□□□□ -1.63
RNF40-206ENST00000564260 KRTAP5-2Q701N4 177 aa4.83□□□□□ -1.64
RNF40-206ENST00000564260 KRTAP5-10Q6L8G5 202 aa4.82□□□□□ -1.64
RNF40-206ENST00000564260 SVIPQ8NHG7 77 aa4.79□□□□□ -1.64
RNF40-206ENST00000564260 KRTAP6-2Q3LI66 62 aa4.71□□□□□ -1.66
RNF40-206ENST00000564260 MT3P25713 68 aa4.69□□□□□ -1.66
RNF40-206ENST00000564260 KRTAP5-7Q6L8G8 165 aa4.63□□□□□ -1.67
RNF40-206ENST00000564260 KRTAP4-11Q9BYQ6 195 aa4.58□□□□□ -1.68
RNF40-206ENST00000564260 KRTAP4-12Q9BQ66 201 aa4.55□□□□□ -1.68
RNF40-206ENST00000564260 LUZP6Q538Z0 58 aa4.47□□□□□ -1.69
RNF40-206ENST00000564260 KRTAP5-8O75690 187 aa4.4□□□□□ -1.71
RNF40-206ENST00000564260 OBSCNQ5VST9 7968 aa4.34□□□□□ -1.71
RNF40-206ENST00000564260 KRTAP9-9Q9BYP9 154 aa4.29□□□□□ -1.72
RNF40-206ENST00000564260 LCE1EQ5T753 118 aa4.28□□□□□ -1.72
RNF40-206ENST00000564260 KRTAP5-1Q6L8H4 278 aa4.25□□□□□ -1.73
RNF40-206ENST00000564260 MUC5ACP98088 5654 aa4.12□□□□□ -1.75
RNF40-206ENST00000564260 LCE3DQ9BYE3 92 aa4.08□□□□□ -1.76
RNF40-206ENST00000564260 MUC5BQ9HC84 5762 aaPredicted RBP4.02□□□□□ -1.77
RNF40-206ENST00000564260 LCE1CQ5T751 118 aa3.95□□□□□ -1.78
RNF40-206ENST00000564260 LCE1BQ5T7P3 118 aa3.95□□□□□ -1.78
RNF40-206ENST00000564260 AHNAKQ09666 5890 aaKnown RBP3.93□□□□□ -1.78
RNF40-206ENST00000564260 KRTAP4-2Q9BYR5 136 aa3.91□□□□□ -1.78
RNF40-206ENST00000564260 LCE3EQ5T5B0 92 aa3.89□□□□□ -1.79
RNF40-206ENST00000564260 A0A0A0MQY5 61 aa3.8□□□□□ -1.8
RNF40-206ENST00000564260 NDUFAF8A1L188 74 aa3.78□□□□□ -1.8
RNF40-206ENST00000564260 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.66□□□□□ -1.82
RNF40-206ENST00000564260 KRTAP5-11Q6L8G4 156 aa3.55□□□□□ -1.84
RNF40-206ENST00000564260 LCE1FQ5T754 118 aa3.43□□□□□ -1.86
RNF40-206ENST00000564260 KRTAP21-2Q3LI59 83 aa3.31□□□□□ -1.88
RNF40-206ENST00000564260 INE1O15225 51 aa3.22□□□□□ -1.89
RNF40-206ENST00000564260 PRM1P04553 51 aa3.04□□□□□ -1.92
RNF40-206ENST00000564260 PHGR1C9JFL3 82 aa3.03□□□□□ -1.92
RNF40-206ENST00000564260 KRTAP4-4Q9BYR3 166 aa2.86□□□□□ -1.95
RNF40-206ENST00000564260 MUC19Q7Z5P9 8384 aa2.66□□□□□ -1.98
RNF40-206ENST00000564260 KRTAP21-1Q3LI58 79 aa2.17□□□□□ -2.06
RNF40-206ENST00000564260 MUC16Q8WXI7 14507 aa1.9□□□□□ -2.11
Retrieved 78 of 20,778 RNA–protein pairs in 75.5 ms