RNA–Protein interactions for RNA: ENST00000563984.1

VPS35-205, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 775 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-205ENST00000563984 C9orf92A6NGG3 77 aa1.83□□□□□ -2.12
VPS35-205ENST00000563984 RPS29P62273 56 aaKnown RBP1.83□□□□□ -2.12
VPS35-205ENST00000563984 DNAH2Q9P225 4427 aa1.83□□□□□ -2.12
VPS35-205ENST00000563984 DEFB4AO15263 64 aa1.82□□□□□ -2.12
VPS35-205ENST00000563984 KRTAP12-3P60328 96 aa1.82□□□□□ -2.12
VPS35-205ENST00000563984 MYCBP2O75592 4640 aa1.82□□□□□ -2.12
VPS35-205ENST00000563984 FAT2Q9NYQ8 4349 aa1.82□□□□□ -2.12
VPS35-205ENST00000563984 DNAH17Q9UFH2 4485 aa1.81□□□□□ -2.12
VPS35-205ENST00000563984 FSIP2Q5CZC0 6907 aa1.8□□□□□ -2.12
VPS35-205ENST00000563984 DNAH5Q8TE73 4624 aa1.8□□□□□ -2.12
VPS35-205ENST00000563984 LRP1BQ9NZR2 4599 aa1.78□□□□□ -2.12
VPS35-205ENST00000563984 DNAH6Q9C0G6 4158 aa1.78□□□□□ -2.12
VPS35-205ENST00000563984 M0R2T5 61 aa1.76□□□□□ -2.13
VPS35-205ENST00000563984 FAT1Q14517 4588 aa1.76□□□□□ -2.13
VPS35-205ENST00000563984 LRP2P98164 4655 aa1.75□□□□□ -2.13
VPS35-205ENST00000563984 FCGBPQ9Y6R7 5405 aaPredicted RBP1.73□□□□□ -2.13
VPS35-205ENST00000563984 VPS13BQ7Z7G8 4022 aa1.73□□□□□ -2.13
VPS35-205ENST00000563984 LRP1Q07954 4544 aaKnown RBP1.71□□□□□ -2.14
VPS35-205ENST00000563984 KRTAP2-3P0C7H8 128 aa1.7□□□□□ -2.14
VPS35-205ENST00000563984 MT1HL1P0DM35 61 aa1.7□□□□□ -2.14
VPS35-205ENST00000563984 KRTAP2-4Q9BYR9 128 aa1.7□□□□□ -2.14
VPS35-205ENST00000563984 KRTAP2-1Q9BYU5 128 aa1.7□□□□□ -2.14
VPS35-205ENST00000563984 FAT3Q8TDW7 4589 aa1.69□□□□□ -2.14
VPS35-205ENST00000563984 KRTAP10-4P60372 401 aaPredicted RBP1.66□□□□□ -2.14
VPS35-205ENST00000563984 NEBP20929 6669 aa1.64□□□□□ -2.15
VPS35-205ENST00000563984 KRTAP8-1Q8IUC2 63 aa1.64□□□□□ -2.15
VPS35-205ENST00000563984 PKHD1L1Q86WI1 4243 aa1.64□□□□□ -2.15
VPS35-205ENST00000563984 LPAP08519 4548 aa1.63□□□□□ -2.15
VPS35-205ENST00000563984 GPR98Q8WXG9 6306 aa1.63□□□□□ -2.15
VPS35-205ENST00000563984 SSPOA2VEC9 5147 aa1.62□□□□□ -2.15
VPS35-205ENST00000563984 SYNE2Q8WXH0 6885 aaKnown RBP1.61□□□□□ -2.15
VPS35-205ENST00000563984 DNAH8Q96JB1 4490 aa1.6□□□□□ -2.15
VPS35-205ENST00000563984 TNXBP22105 4242 aa1.6□□□□□ -2.15
VPS35-205ENST00000563984 USH2AO75445 5202 aa1.53□□□□□ -2.16
VPS35-205ENST00000563984 KRTAP20-1Q3LI63 56 aa1.52□□□□□ -2.17
VPS35-205ENST00000563984 MACF1Q9UPN3 7388 aaKnown RBP1.5□□□□□ -2.17
VPS35-205ENST00000563984 FLGP20930 4061 aaPredicted RBP1.5□□□□□ -2.17
VPS35-205ENST00000563984 MT1HP80294 61 aa1.48□□□□□ -2.17
VPS35-205ENST00000563984 PRM1P04553 51 aa1.47□□□□□ -2.17
VPS35-205ENST00000563984 MUC12Q9UKN1 5478 aa1.43□□□□□ -2.18
VPS35-205ENST00000563984 MUC17Q685J3 4493 aa1.42□□□□□ -2.18
VPS35-205ENST00000563984 KMT2DO14686 5537 aa1.42□□□□□ -2.18
VPS35-205ENST00000563984 KRTAP19-2Q3LHN2 52 aa1.4□□□□□ -2.19
VPS35-205ENST00000563984 AHNAK2Q8IVF2 5795 aa1.39□□□□□ -2.19
VPS35-205ENST00000563984 KRTAP19-6Q3LI70 58 aa1.36□□□□□ -2.19
VPS35-205ENST00000563984 KRTAP19-5Q3LI72 72 aa1.36□□□□□ -2.19
VPS35-205ENST00000563984 MDN1Q9NU22 5596 aa1.34□□□□□ -2.2
VPS35-205ENST00000563984 MT1AP04731 61 aa1.33□□□□□ -2.2
VPS35-205ENST00000563984 MT2AP02795 61 aa1.31□□□□□ -2.2
VPS35-205ENST00000563984 MT1FP04733 61 aa1.29□□□□□ -2.2
VPS35-205ENST00000563984 SPRR2EP22531 72 aa1.28□□□□□ -2.2
VPS35-205ENST00000563984 SPRR2BP35325 72 aa1.28□□□□□ -2.2
VPS35-205ENST00000563984 SPRR2AP35326 72 aa1.28□□□□□ -2.2
VPS35-205ENST00000563984 AHNAKQ09666 5890 aaKnown RBP1.26□□□□□ -2.21
VPS35-205ENST00000563984 SPRR2DP22532 72 aa1.24□□□□□ -2.21
VPS35-205ENST00000563984 SPRR2FQ96RM1 72 aa1.24□□□□□ -2.21
VPS35-205ENST00000563984 MUC5BQ9HC84 5762 aaPredicted RBP1.24□□□□□ -2.21
VPS35-205ENST00000563984 SPRR2GQ9BYE4 73 aa1.23□□□□□ -2.21
VPS35-205ENST00000563984 DSTQ03001 7570 aaKnown RBP1.23□□□□□ -2.21
VPS35-205ENST00000563984 KRTAP19-3Q7Z4W3 81 aa1.22□□□□□ -2.21
VPS35-205ENST00000563984 KRTAP6-2Q3LI66 62 aa1.2□□□□□ -2.22
VPS35-205ENST00000563984 KRTAP5-10Q6L8G5 202 aa1.2□□□□□ -2.22
VPS35-205ENST00000563984 MT1EP04732 61 aa1.17□□□□□ -2.22
VPS35-205ENST00000563984 SYNE1Q8NF91 8797 aaKnown RBP1.15□□□□□ -2.23
VPS35-205ENST00000563984 MUC5ACP98088 5654 aa1.14□□□□□ -2.23
VPS35-205ENST00000563984 MT1LQ93083 61 aa1.13□□□□□ -2.23
VPS35-205ENST00000563984 MT4P47944 62 aa1.12□□□□□ -2.23
VPS35-205ENST00000563984 MT1BP07438 61 aa1.1□□□□□ -2.23
VPS35-205ENST00000563984 KRTAP19-8Q3LI54 63 aa1.08□□□□□ -2.24
VPS35-205ENST00000563984 KRTAP21-1Q3LI58 79 aa1.08□□□□□ -2.24
VPS35-205ENST00000563984 MT1XP80297 61 aa1.07□□□□□ -2.24
VPS35-205ENST00000563984 MUC16Q8WXI7 14507 aa1.03□□□□□ -2.24
VPS35-205ENST00000563984 KRTAP20-2Q3LI61 65 aa0.94□□□□□ -2.26
VPS35-205ENST00000563984 KRTAP19-7Q3SYF9 63 aa0.94□□□□□ -2.26
VPS35-205ENST00000563984 MT1GP13640 62 aa0.92□□□□□ -2.26
VPS35-205ENST00000563984 MT1MQ8N339 61 aa0.86□□□□□ -2.27
VPS35-205ENST00000563984 KRTAP6-1Q3LI64 71 aa0.8□□□□□ -2.28
VPS35-205ENST00000563984 PHGR1C9JFL3 82 aa0.74□□□□□ -2.29
Retrieved 78 of 20,778 RNA–protein pairs in 29.3 ms