RNA–Protein interactions for RNA: ENST00000563112.1

CLK3-210, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 665 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-210ENST00000563112 KRTAP19-7Q3SYF9 63 aa6.3□□□□□ -1.4
CLK3-210ENST00000563112 MT1EP04732 61 aa6.27□□□□□ -1.41
CLK3-210ENST00000563112 LCE5AQ5TCM9 118 aa6.25□□□□□ -1.41
CLK3-210ENST00000563112 KRTAP19-3Q7Z4W3 81 aa6.24□□□□□ -1.41
CLK3-210ENST00000563112 ROMO1P60602 79 aa6.2□□□□□ -1.42
CLK3-210ENST00000563112 DSTQ03001 7570 aaKnown RBP6.19□□□□□ -1.42
CLK3-210ENST00000563112 KRTAP19-5Q3LI72 72 aa6.16□□□□□ -1.42
CLK3-210ENST00000563112 MT1GP13640 62 aa6.11□□□□□ -1.43
CLK3-210ENST00000563112 PRAC1Q96KF2 57 aa6.11□□□□□ -1.43
CLK3-210ENST00000563112 PP632Q6XCG6 107 aa6.09□□□□□ -1.43
CLK3-210ENST00000563112 TNP1P09430 55 aa6.08□□□□□ -1.44
CLK3-210ENST00000563112 KRTAP25-1Q3LHN0 102 aa6.06□□□□□ -1.44
CLK3-210ENST00000563112 C10orf95Q9H7T3 257 aa6.04□□□□□ -1.44
CLK3-210ENST00000563112 LCE3AQ5TA76 89 aa6□□□□□ -1.45
CLK3-210ENST00000563112 MT1LQ93083 61 aa5.98□□□□□ -1.45
CLK3-210ENST00000563112 KRTAP4-9Q9BYQ8 210 aa5.98□□□□□ -1.45
CLK3-210ENST00000563112 MT1MQ8N339 61 aa5.97□□□□□ -1.45
CLK3-210ENST00000563112 GPR98Q8WXG9 6306 aa5.93□□□□□ -1.46
CLK3-210ENST00000563112 LCE4AQ5TA78 99 aa5.86□□□□□ -1.47
CLK3-210ENST00000563112 LCE1DQ5T752 114 aa5.84□□□□□ -1.47
CLK3-210ENST00000563112 KRTAP4-3Q9BYR4 195 aa5.81□□□□□ -1.48
CLK3-210ENST00000563112 KRTAP12-3P60328 96 aa5.8□□□□□ -1.48
CLK3-210ENST00000563112 HMCN1Q96RW7 5635 aa5.79□□□□□ -1.48
CLK3-210ENST00000563112 MT4P47944 62 aa5.78□□□□□ -1.48
CLK3-210ENST00000563112 KRTAP5-4Q6L8H1 288 aa5.7□□□□□ -1.5
CLK3-210ENST00000563112 KRTAP23-1A1A580 65 aa5.67□□□□□ -1.5
CLK3-210ENST00000563112 KRTAP4-7Q9BYR0 210 aa5.67□□□□□ -1.5
CLK3-210ENST00000563112 KRTAP4-6Q9BYQ5 205 aa5.59□□□□□ -1.51
CLK3-210ENST00000563112 AHNAK2Q8IVF2 5795 aa5.59□□□□□ -1.52
CLK3-210ENST00000563112 KRTAP19-4Q3LI73 84 aa5.52□□□□□ -1.53
CLK3-210ENST00000563112 KRTAP5-5Q701N2 237 aaPredicted RBP5.45□□□□□ -1.54
CLK3-210ENST00000563112 KRTAP5-10Q6L8G5 202 aa5.43□□□□□ -1.54
CLK3-210ENST00000563112 KRTAP15-1Q3LI76 137 aa5.41□□□□□ -1.54
CLK3-210ENST00000563112 KRTAP12-4P60329 112 aa5.4□□□□□ -1.54
CLK3-210ENST00000563112 KRTAP20-2Q3LI61 65 aa5.4□□□□□ -1.54
CLK3-210ENST00000563112 SPRR5A0A1B0GTR4 108 aa5.39□□□□□ -1.55
CLK3-210ENST00000563112 LOC100996750A0A140TA64 210 aa5.37□□□□□ -1.55
CLK3-210ENST00000563112 SYNE1Q8NF91 8797 aaKnown RBP5.34□□□□□ -1.56
CLK3-210ENST00000563112 LCE3CQ5T5A8 94 aa5.33□□□□□ -1.56
CLK3-210ENST00000563112 KRTAP5-3Q6L8H2 238 aa5.32□□□□□ -1.56
CLK3-210ENST00000563112 LUZP6Q538Z0 58 aa5.27□□□□□ -1.57
CLK3-210ENST00000563112 KRTAP5-7Q6L8G8 165 aa5.24□□□□□ -1.57
CLK3-210ENST00000563112 NDUFAF8A1L188 74 aa5.11□□□□□ -1.59
CLK3-210ENST00000563112 H3BS24 57 aa5.1□□□□□ -1.59
CLK3-210ENST00000563112 MT1AP04731 61 aa5.1□□□□□ -1.59
CLK3-210ENST00000563112 KRTAP6-1Q3LI64 71 aa5.06□□□□□ -1.6
CLK3-210ENST00000563112 KRTAP9-6A8MVA2 160 aa4.98□□□□□ -1.61
CLK3-210ENST00000563112 KRTAP5-2Q701N4 177 aa4.98□□□□□ -1.61
CLK3-210ENST00000563112 KRTAP4-11Q9BYQ6 195 aa4.95□□□□□ -1.62
CLK3-210ENST00000563112 KRTAP9-4Q9BYQ2 154 aa4.94□□□□□ -1.62
CLK3-210ENST00000563112 KRTAP6-2Q3LI66 62 aa4.85□□□□□ -1.63
CLK3-210ENST00000563112 A0A0A0MQY5 61 aa4.81□□□□□ -1.64
CLK3-210ENST00000563112 KRTAP5-8O75690 187 aa4.76□□□□□ -1.65
CLK3-210ENST00000563112 OBSCNQ5VST9 7968 aa4.74□□□□□ -1.65
CLK3-210ENST00000563112 MT3P25713 68 aa4.7□□□□□ -1.66
CLK3-210ENST00000563112 AHNAKQ09666 5890 aaKnown RBP4.65□□□□□ -1.67
CLK3-210ENST00000563112 MUC5BQ9HC84 5762 aaPredicted RBP4.64□□□□□ -1.67
CLK3-210ENST00000563112 MUC5ACP98088 5654 aa4.58□□□□□ -1.68
CLK3-210ENST00000563112 KRTAP9-9Q9BYP9 154 aa4.57□□□□□ -1.68
CLK3-210ENST00000563112 KRTAP5-1Q6L8H4 278 aa4.47□□□□□ -1.69
CLK3-210ENST00000563112 INE1O15225 51 aa4.43□□□□□ -1.7
CLK3-210ENST00000563112 LCE1EQ5T753 118 aa4.31□□□□□ -1.72
CLK3-210ENST00000563112 KRTAP4-12Q9BQ66 201 aa4.2□□□□□ -1.74
CLK3-210ENST00000563112 LCE1BQ5T7P3 118 aa4.07□□□□□ -1.76
CLK3-210ENST00000563112 KRTAP4-2Q9BYR5 136 aa4.03□□□□□ -1.76
CLK3-210ENST00000563112 LCE1CQ5T751 118 aa3.99□□□□□ -1.77
CLK3-210ENST00000563112 LCE3DQ9BYE3 92 aa3.85□□□□□ -1.79
CLK3-210ENST00000563112 LCE3EQ5T5B0 92 aa3.62□□□□□ -1.83
CLK3-210ENST00000563112 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.62□□□□□ -1.83
CLK3-210ENST00000563112 KRTAP5-11Q6L8G4 156 aa3.61□□□□□ -1.83
CLK3-210ENST00000563112 LCE1FQ5T754 118 aa3.54□□□□□ -1.84
CLK3-210ENST00000563112 KRTAP21-2Q3LI59 83 aa3.32□□□□□ -1.88
CLK3-210ENST00000563112 PHGR1C9JFL3 82 aa3.19□□□□□ -1.9
CLK3-210ENST00000563112 PRM1P04553 51 aa3.18□□□□□ -1.9
CLK3-210ENST00000563112 KRTAP4-4Q9BYR3 166 aa3.06□□□□□ -1.92
CLK3-210ENST00000563112 MUC19Q7Z5P9 8384 aa2.93□□□□□ -1.94
CLK3-210ENST00000563112 KRTAP21-1Q3LI58 79 aa2.43□□□□□ -2.02
CLK3-210ENST00000563112 MUC16Q8WXI7 14507 aa2.06□□□□□ -2.08
Retrieved 78 of 20,778 RNA–protein pairs in 10 ms