RNA–Protein interactions for RNA: ENST00000561348.1

HERC1-212, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase family member 1, humanhuman

TSL 2

Gene HERC1, Length 588 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC1-212ENST00000561348 KRTAP5-9P26371 169 aa4.05□□□□□ -1.76
HERC1-212ENST00000561348 MUC12Q9UKN1 5478 aa4.03□□□□□ -1.76
HERC1-212ENST00000561348 SPRR2EP22531 72 aa4□□□□□ -1.77
HERC1-212ENST00000561348 SPRR2BP35325 72 aa4□□□□□ -1.77
HERC1-212ENST00000561348 SPRR2AP35326 72 aa4□□□□□ -1.77
HERC1-212ENST00000561348 KRTAP10-12P60413 245 aa3.99□□□□□ -1.77
HERC1-212ENST00000561348 K7ERS5 55 aa3.98□□□□□ -1.77
HERC1-212ENST00000561348 KRTAP12-1P59990 96 aa3.98□□□□□ -1.77
HERC1-212ENST00000561348 LCE1AQ5T7P2 110 aa3.97□□□□□ -1.77
HERC1-212ENST00000561348 NEBP20929 6669 aa3.97□□□□□ -1.77
HERC1-212ENST00000561348 KRTAP20-1Q3LI63 56 aa3.95□□□□□ -1.78
HERC1-212ENST00000561348 MDN1Q9NU22 5596 aa3.94□□□□□ -1.78
HERC1-212ENST00000561348 PRAC1Q96KF2 57 aa3.91□□□□□ -1.78
HERC1-212ENST00000561348 KRTAP5-3Q6L8H2 238 aa3.9□□□□□ -1.79
HERC1-212ENST00000561348 SPRR2DP22532 72 aa3.86□□□□□ -1.79
HERC1-212ENST00000561348 KRTAP2-3P0C7H8 128 aa3.84□□□□□ -1.79
HERC1-212ENST00000561348 KRTAP2-4Q9BYR9 128 aa3.84□□□□□ -1.79
HERC1-212ENST00000561348 ROMO1P60602 79 aa3.83□□□□□ -1.8
HERC1-212ENST00000561348 TNP1P09430 55 aa3.8□□□□□ -1.8
HERC1-212ENST00000561348 C10orf95Q9H7T3 257 aa3.8□□□□□ -1.8
HERC1-212ENST00000561348 KRTAP25-1Q3LHN0 102 aa3.79□□□□□ -1.8
HERC1-212ENST00000561348 KRTAP19-5Q3LI72 72 aa3.76□□□□□ -1.81
HERC1-212ENST00000561348 KRTAP19-7Q3SYF9 63 aa3.76□□□□□ -1.81
HERC1-212ENST00000561348 MT1EP04732 61 aa3.74□□□□□ -1.81
HERC1-212ENST00000561348 LCE3AQ5TA76 89 aa3.73□□□□□ -1.81
HERC1-212ENST00000561348 KRTAP2-2Q9BYT5 123 aa3.73□□□□□ -1.81
HERC1-212ENST00000561348 KRTAP2-1Q9BYU5 128 aa3.73□□□□□ -1.81
HERC1-212ENST00000561348 KRTAP19-3Q7Z4W3 81 aa3.69□□□□□ -1.82
HERC1-212ENST00000561348 MT3P25713 68 aa3.66□□□□□ -1.82
HERC1-212ENST00000561348 PP632Q6XCG6 107 aa3.62□□□□□ -1.83
HERC1-212ENST00000561348 MT1GP13640 62 aa3.61□□□□□ -1.83
HERC1-212ENST00000561348 MT1LQ93083 61 aa3.59□□□□□ -1.83
HERC1-212ENST00000561348 KRTAP12-3P60328 96 aa3.58□□□□□ -1.84
HERC1-212ENST00000561348 MT1MQ8N339 61 aa3.57□□□□□ -1.84
HERC1-212ENST00000561348 DSTQ03001 7570 aaKnown RBP3.57□□□□□ -1.84
HERC1-212ENST00000561348 KRTAP4-3Q9BYR4 195 aa3.54□□□□□ -1.84
HERC1-212ENST00000561348 MT4P47944 62 aa3.41□□□□□ -1.86
HERC1-212ENST00000561348 LUZP6Q538Z0 58 aa3.37□□□□□ -1.87
HERC1-212ENST00000561348 NDUFAF8A1L188 74 aa3.32□□□□□ -1.88
HERC1-212ENST00000561348 LCE3CQ5T5A8 94 aa3.29□□□□□ -1.88
HERC1-212ENST00000561348 KRTAP5-4Q6L8H1 288 aa3.26□□□□□ -1.89
HERC1-212ENST00000561348 LCE1EQ5T753 118 aa3.25□□□□□ -1.89
HERC1-212ENST00000561348 LCE1FQ5T754 118 aa3.25□□□□□ -1.89
HERC1-212ENST00000561348 HMCN1Q96RW7 5635 aa3.22□□□□□ -1.89
HERC1-212ENST00000561348 KRTAP5-5Q701N2 237 aaPredicted RBP3.19□□□□□ -1.9
HERC1-212ENST00000561348 KRTAP12-4P60329 112 aa3.18□□□□□ -1.9
HERC1-212ENST00000561348 GPR98Q8WXG9 6306 aa3.15□□□□□ -1.9
HERC1-212ENST00000561348 SPRR5A0A1B0GTR4 108 aa3.15□□□□□ -1.91
HERC1-212ENST00000561348 KRTAP5-11Q6L8G4 156 aa3.14□□□□□ -1.91
HERC1-212ENST00000561348 KRTAP20-2Q3LI61 65 aa3.13□□□□□ -1.91
HERC1-212ENST00000561348 KRTAP9-6A8MVA2 160 aa3.08□□□□□ -1.92
HERC1-212ENST00000561348 MT1AP04731 61 aa3.06□□□□□ -1.92
HERC1-212ENST00000561348 KRTAP6-1Q3LI64 71 aa3.06□□□□□ -1.92
HERC1-212ENST00000561348 AHNAK2Q8IVF2 5795 aa3.06□□□□□ -1.92
HERC1-212ENST00000561348 SYNE1Q8NF91 8797 aaKnown RBP3.06□□□□□ -1.92
HERC1-212ENST00000561348 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.02□□□□□ -1.93
HERC1-212ENST00000561348 KRTAP5-10Q6L8G5 202 aa3.01□□□□□ -1.93
HERC1-212ENST00000561348 KRTAP6-2Q3LI66 62 aa2.92□□□□□ -1.94
HERC1-212ENST00000561348 KRTAP5-7Q6L8G8 165 aa2.87□□□□□ -1.95
HERC1-212ENST00000561348 KRTAP5-2Q701N4 177 aa2.87□□□□□ -1.95
HERC1-212ENST00000561348 LCE3EQ5T5B0 92 aa2.75□□□□□ -1.97
HERC1-212ENST00000561348 OBSCNQ5VST9 7968 aa2.75□□□□□ -1.97
HERC1-212ENST00000561348 KRTAP5-8O75690 187 aa2.72□□□□□ -1.97
HERC1-212ENST00000561348 INE1O15225 51 aa2.7□□□□□ -1.98
HERC1-212ENST00000561348 KRTAP5-1Q6L8H4 278 aa2.63□□□□□ -1.99
HERC1-212ENST00000561348 MUC5BQ9HC84 5762 aaPredicted RBP2.5□□□□□ -2.01
HERC1-212ENST00000561348 KRTAP4-4Q9BYR3 166 aa2.49□□□□□ -2.01
HERC1-212ENST00000561348 MUC5ACP98088 5654 aa2.48□□□□□ -2.01
HERC1-212ENST00000561348 LCE1BQ5T7P3 118 aa2.48□□□□□ -2.01
HERC1-212ENST00000561348 AHNAKQ09666 5890 aaKnown RBP2.47□□□□□ -2.01
HERC1-212ENST00000561348 LCE3DQ9BYE3 92 aa2.41□□□□□ -2.02
HERC1-212ENST00000561348 LCE1CQ5T751 118 aa2.31□□□□□ -2.04
HERC1-212ENST00000561348 PRM1P04553 51 aa2.01□□□□□ -2.09
HERC1-212ENST00000561348 KRTAP21-2Q3LI59 83 aa1.97□□□□□ -2.09
HERC1-212ENST00000561348 PHGR1C9JFL3 82 aa1.82□□□□□ -2.12
HERC1-212ENST00000561348 MUC19Q7Z5P9 8384 aa1.69□□□□□ -2.14
HERC1-212ENST00000561348 KRTAP21-1Q3LI58 79 aa1.34□□□□□ -2.19
HERC1-212ENST00000561348 MUC16Q8WXI7 14507 aa1.15□□□□□ -2.23
Retrieved 78 of 20,778 RNA–protein pairs in 10.8 ms