RNA–Protein interactions for RNA: ENST00000561242.1

TPM1-229, Transcript of tropomyosin 1, humanhuman

TSL 2

Gene TPM1, Length 673 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-229ENST00000561242 KRTAP25-1Q3LHN0 102 aa4.14□□□□□ -1.75
TPM1-229ENST00000561242 C10orf95Q9H7T3 257 aa4.14□□□□□ -1.75
TPM1-229ENST00000561242 LCE5AQ5TCM9 118 aa4.13□□□□□ -1.75
TPM1-229ENST00000561242 SPRR2EP22531 72 aa4.12□□□□□ -1.75
TPM1-229ENST00000561242 SPRR2BP35325 72 aa4.12□□□□□ -1.75
TPM1-229ENST00000561242 SPRR2AP35326 72 aa4.12□□□□□ -1.75
TPM1-229ENST00000561242 ROMO1P60602 79 aa4.08□□□□□ -1.76
TPM1-229ENST00000561242 BRK1Q8WUW1 75 aa4.08□□□□□ -1.76
TPM1-229ENST00000561242 KRTAP20-1Q3LI63 56 aa4.06□□□□□ -1.76
TPM1-229ENST00000561242 LCE3AQ5TA76 89 aa4.01□□□□□ -1.77
TPM1-229ENST00000561242 MUC12Q9UKN1 5478 aa3.99□□□□□ -1.77
TPM1-229ENST00000561242 SPRR2DP22532 72 aa3.99□□□□□ -1.77
TPM1-229ENST00000561242 KRTAP19-5Q3LI72 72 aa3.98□□□□□ -1.77
TPM1-229ENST00000561242 PP632Q6XCG6 107 aa3.98□□□□□ -1.77
TPM1-229ENST00000561242 LCE1AQ5T7P2 110 aa3.96□□□□□ -1.78
TPM1-229ENST00000561242 KMT2DO14686 5537 aa3.95□□□□□ -1.78
TPM1-229ENST00000561242 KRTAP2-3P0C7H8 128 aa3.93□□□□□ -1.78
TPM1-229ENST00000561242 KRTAP2-4Q9BYR9 128 aa3.93□□□□□ -1.78
TPM1-229ENST00000561242 MT1EP04732 61 aa3.92□□□□□ -1.78
TPM1-229ENST00000561242 KRTAP12-3P60328 96 aa3.92□□□□□ -1.78
TPM1-229ENST00000561242 KRTAP19-7Q3SYF9 63 aa3.91□□□□□ -1.78
TPM1-229ENST00000561242 KRTAP19-3Q7Z4W3 81 aa3.89□□□□□ -1.79
TPM1-229ENST00000561242 MT1GP13640 62 aa3.88□□□□□ -1.79
TPM1-229ENST00000561242 PMAIP1Q13794 54 aa3.88□□□□□ -1.79
TPM1-229ENST00000561242 MDN1Q9NU22 5596 aa3.84□□□□□ -1.79
TPM1-229ENST00000561242 KRTAP2-2Q9BYT5 123 aa3.82□□□□□ -1.8
TPM1-229ENST00000561242 KRTAP2-1Q9BYU5 128 aa3.82□□□□□ -1.8
TPM1-229ENST00000561242 MT1LQ93083 61 aa3.79□□□□□ -1.8
TPM1-229ENST00000561242 KRTAP15-1Q3LI76 137 aa3.77□□□□□ -1.81
TPM1-229ENST00000561242 PRO0628Q9UI54 55 aa3.74□□□□□ -1.81
TPM1-229ENST00000561242 MT1MQ8N339 61 aa3.73□□□□□ -1.81
TPM1-229ENST00000561242 GPR98Q8WXG9 6306 aa3.65□□□□□ -1.83
TPM1-229ENST00000561242 LCE3CQ5T5A8 94 aa3.61□□□□□ -1.83
TPM1-229ENST00000561242 KRTAP4-3Q9BYR4 195 aa3.57□□□□□ -1.84
TPM1-229ENST00000561242 KTN1-AS1Q86SY8 53 aa3.52□□□□□ -1.85
TPM1-229ENST00000561242 PRAC1Q96KF2 57 aa3.52□□□□□ -1.85
TPM1-229ENST00000561242 DSTQ03001 7570 aaKnown RBP3.49□□□□□ -1.85
TPM1-229ENST00000561242 MT4P47944 62 aa3.45□□□□□ -1.86
TPM1-229ENST00000561242 KRTAP12-4P60329 112 aa3.43□□□□□ -1.86
TPM1-229ENST00000561242 KRTAP5-4Q6L8H1 288 aa3.34□□□□□ -1.87
TPM1-229ENST00000561242 KRTAP5-5Q701N2 237 aaPredicted RBP3.29□□□□□ -1.88
TPM1-229ENST00000561242 MT1AP04731 61 aa3.27□□□□□ -1.89
TPM1-229ENST00000561242 SPRR5A0A1B0GTR4 108 aa3.26□□□□□ -1.89
TPM1-229ENST00000561242 KRTAP5-10Q6L8G5 202 aa3.25□□□□□ -1.89
TPM1-229ENST00000561242 HMCN1Q96RW7 5635 aa3.24□□□□□ -1.89
TPM1-229ENST00000561242 LUZP6Q538Z0 58 aa3.23□□□□□ -1.89
TPM1-229ENST00000561242 AHNAK2Q8IVF2 5795 aa3.2□□□□□ -1.9
TPM1-229ENST00000561242 KRTAP9-6A8MVA2 160 aa3.2□□□□□ -1.9
TPM1-229ENST00000561242 KRTAP20-2Q3LI61 65 aa3.2□□□□□ -1.9
TPM1-229ENST00000561242 KRTAP5-7Q6L8G8 165 aa3.19□□□□□ -1.9
TPM1-229ENST00000561242 KRTAP6-1Q3LI64 71 aa3.17□□□□□ -1.9
TPM1-229ENST00000561242 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.12□□□□□ -1.91
TPM1-229ENST00000561242 NDUFAF8A1L188 74 aa3.11□□□□□ -1.91
TPM1-229ENST00000561242 MT3P25713 68 aa3.07□□□□□ -1.92
TPM1-229ENST00000561242 SYNE1Q8NF91 8797 aaKnown RBP3.04□□□□□ -1.92
TPM1-229ENST00000561242 KRTAP6-2Q3LI66 62 aa3.03□□□□□ -1.92
TPM1-229ENST00000561242 KRTAP5-11Q6L8G4 156 aa2.96□□□□□ -1.94
TPM1-229ENST00000561242 KRTAP5-2Q701N4 177 aa2.94□□□□□ -1.94
TPM1-229ENST00000561242 AHNAKQ09666 5890 aaKnown RBP2.8□□□□□ -1.96
TPM1-229ENST00000561242 MUC5ACP98088 5654 aa2.77□□□□□ -1.97
TPM1-229ENST00000561242 KRTAP5-8O75690 187 aa2.72□□□□□ -1.97
TPM1-229ENST00000561242 LCE3DQ9BYE3 92 aa2.71□□□□□ -1.98
TPM1-229ENST00000561242 KRTAP5-1Q6L8H4 278 aa2.7□□□□□ -1.98
TPM1-229ENST00000561242 LCE1EQ5T753 118 aa2.69□□□□□ -1.98
TPM1-229ENST00000561242 MUC5BQ9HC84 5762 aaPredicted RBP2.69□□□□□ -1.98
TPM1-229ENST00000561242 KRTAP4-4Q9BYR3 166 aa2.62□□□□□ -1.99
TPM1-229ENST00000561242 OBSCNQ5VST9 7968 aa2.61□□□□□ -1.99
TPM1-229ENST00000561242 LCE1FQ5T754 118 aa2.61□□□□□ -1.99
TPM1-229ENST00000561242 LCE3EQ5T5B0 92 aa2.6□□□□□ -1.99
TPM1-229ENST00000561242 LCE1BQ5T7P3 118 aa2.6□□□□□ -1.99
TPM1-229ENST00000561242 LCE1CQ5T751 118 aa2.48□□□□□ -2.01
TPM1-229ENST00000561242 INE1O15225 51 aa2.28□□□□□ -2.04
TPM1-229ENST00000561242 PRM1P04553 51 aa2.05□□□□□ -2.08
TPM1-229ENST00000561242 KRTAP21-2Q3LI59 83 aa2.04□□□□□ -2.08
TPM1-229ENST00000561242 PHGR1C9JFL3 82 aa1.88□□□□□ -2.11
TPM1-229ENST00000561242 MUC19Q7Z5P9 8384 aa1.58□□□□□ -2.16
TPM1-229ENST00000561242 KRTAP21-1Q3LI58 79 aa1.43□□□□□ -2.18
TPM1-229ENST00000561242 MUC16Q8WXI7 14507 aa1.2□□□□□ -2.22
Retrieved 78 of 20,778 RNA–protein pairs in 66.8 ms