RNA–Protein interactions for RNA: ENST00000560637.5

VPS13C-209, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 1 (best)

Gene VPS13C, Length 3,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-209ENST00000560637 PP632Q6XCG6 107 aa2.2□□□□□ -2.06
VPS13C-209ENST00000560637 KRTAP10-7P60409 375 aaPredicted RBP2.18□□□□□ -2.06
VPS13C-209ENST00000560637 OBSCNQ5VST9 7968 aa2.17□□□□□ -2.06
VPS13C-209ENST00000560637 SPRR2FQ96RM1 72 aa2.17□□□□□ -2.06
VPS13C-209ENST00000560637 KRTAP19-8Q3LI54 63 aa2.16□□□□□ -2.06
VPS13C-209ENST00000560637 KMT2DO14686 5537 aa2.15□□□□□ -2.06
VPS13C-209ENST00000560637 MT1XP80297 61 aa2.15□□□□□ -2.07
VPS13C-209ENST00000560637 DSTQ03001 7570 aaKnown RBP2.15□□□□□ -2.07
VPS13C-209ENST00000560637 KRTAP12-3P60328 96 aa2.14□□□□□ -2.07
VPS13C-209ENST00000560637 KRTAP19-6Q3LI70 58 aa2.14□□□□□ -2.07
VPS13C-209ENST00000560637 KRTAP10-5P60370 271 aa2.13□□□□□ -2.07
VPS13C-209ENST00000560637 SSPOA2VEC9 5147 aa2.12□□□□□ -2.07
VPS13C-209ENST00000560637 KRTAP6-3Q3LI67 103 aa2.12□□□□□ -2.07
VPS13C-209ENST00000560637 KRTAP4-11Q9BYQ6 195 aa2.09□□□□□ -2.07
VPS13C-209ENST00000560637 SYNE1Q8NF91 8797 aaKnown RBP2.09□□□□□ -2.07
VPS13C-209ENST00000560637 KRTAP19-5Q3LI72 72 aa2.09□□□□□ -2.08
VPS13C-209ENST00000560637 SYNE2Q8WXH0 6885 aaKnown RBP2.09□□□□□ -2.08
VPS13C-209ENST00000560637 LCE1FQ5T754 118 aa2.08□□□□□ -2.08
VPS13C-209ENST00000560637 FCGBPQ9Y6R7 5405 aaPredicted RBP2.07□□□□□ -2.08
VPS13C-209ENST00000560637 MACF1Q9UPN3 7388 aaKnown RBP2.07□□□□□ -2.08
VPS13C-209ENST00000560637 LCE1AQ5T7P2 110 aa2.05□□□□□ -2.08
VPS13C-209ENST00000560637 MUC12Q9UKN1 5478 aa2.05□□□□□ -2.08
VPS13C-209ENST00000560637 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.05□□□□□ -2.08
VPS13C-209ENST00000560637 SPRR2EP22531 72 aa2.03□□□□□ -2.09
VPS13C-209ENST00000560637 SPRR2BP35325 72 aa2.03□□□□□ -2.09
VPS13C-209ENST00000560637 SPRR2AP35326 72 aa2.03□□□□□ -2.09
VPS13C-209ENST00000560637 KRTAP20-1Q3LI63 56 aa1.97□□□□□ -2.09
VPS13C-209ENST00000560637 KRTAP2-2Q9BYT5 123 aa1.97□□□□□ -2.09
VPS13C-209ENST00000560637 KRTAP5-9P26371 169 aa1.96□□□□□ -2.1
VPS13C-209ENST00000560637 LCE3CQ5T5A8 94 aa1.94□□□□□ -2.1
VPS13C-209ENST00000560637 SPRR2DP22532 72 aa1.94□□□□□ -2.1
VPS13C-209ENST00000560637 KRTAP2-3P0C7H8 128 aa1.93□□□□□ -2.1
VPS13C-209ENST00000560637 KRTAP2-4Q9BYR9 128 aa1.93□□□□□ -2.1
VPS13C-209ENST00000560637 KRTAP4-3Q9BYR4 195 aa1.93□□□□□ -2.1
VPS13C-209ENST00000560637 MT1GP13640 62 aa1.92□□□□□ -2.1
VPS13C-209ENST00000560637 MDN1Q9NU22 5596 aa1.91□□□□□ -2.1
VPS13C-209ENST00000560637 NEBP20929 6669 aa1.91□□□□□ -2.1
VPS13C-209ENST00000560637 MT1EP04732 61 aa1.9□□□□□ -2.11
VPS13C-209ENST00000560637 MT3P25713 68 aa1.89□□□□□ -2.11
VPS13C-209ENST00000560637 KRTAP19-7Q3SYF9 63 aa1.88□□□□□ -2.11
VPS13C-209ENST00000560637 KRTAP19-3Q7Z4W3 81 aa1.88□□□□□ -2.11
VPS13C-209ENST00000560637 MT1LQ93083 61 aa1.87□□□□□ -2.11
VPS13C-209ENST00000560637 KRTAP2-1Q9BYU5 128 aa1.85□□□□□ -2.11
VPS13C-209ENST00000560637 MUC5BQ9HC84 5762 aaPredicted RBP1.84□□□□□ -2.11
VPS13C-209ENST00000560637 MT1MQ8N339 61 aa1.82□□□□□ -2.12
VPS13C-209ENST00000560637 MT4P47944 62 aa1.8□□□□□ -2.12
VPS13C-209ENST00000560637 LCE3EQ5T5B0 92 aa1.8□□□□□ -2.12
VPS13C-209ENST00000560637 INE1O15225 51 aa1.79□□□□□ -2.12
VPS13C-209ENST00000560637 LCE1EQ5T753 118 aa1.76□□□□□ -2.13
VPS13C-209ENST00000560637 KRTAP12-4P60329 112 aa1.72□□□□□ -2.13
VPS13C-209ENST00000560637 KRTAP5-4Q6L8H1 288 aa1.71□□□□□ -2.14
VPS13C-209ENST00000560637 KRTAP9-6A8MVA2 160 aa1.7□□□□□ -2.14
VPS13C-209ENST00000560637 SPRR5A0A1B0GTR4 108 aa1.69□□□□□ -2.14
VPS13C-209ENST00000560637 LCE3DQ9BYE3 92 aa1.63□□□□□ -2.15
VPS13C-209ENST00000560637 KRTAP6-1Q3LI64 71 aa1.62□□□□□ -2.15
VPS13C-209ENST00000560637 GPR98Q8WXG9 6306 aa1.61□□□□□ -2.15
VPS13C-209ENST00000560637 KRTAP5-2Q701N4 177 aa1.59□□□□□ -2.15
VPS13C-209ENST00000560637 MT1AP04731 61 aa1.58□□□□□ -2.16
VPS13C-209ENST00000560637 KRTAP6-2Q3LI66 62 aa1.56□□□□□ -2.16
VPS13C-209ENST00000560637 KRTAP5-8O75690 187 aa1.52□□□□□ -2.17
VPS13C-209ENST00000560637 LCE1BQ5T7P3 118 aa1.52□□□□□ -2.17
VPS13C-209ENST00000560637 KRTAP5-7Q6L8G8 165 aa1.52□□□□□ -2.17
VPS13C-209ENST00000560637 KRTAP5-10Q6L8G5 202 aa1.5□□□□□ -2.17
VPS13C-209ENST00000560637 MUC19Q7Z5P9 8384 aa1.47□□□□□ -2.17
VPS13C-209ENST00000560637 KRTAP4-4Q9BYR3 166 aa1.46□□□□□ -2.18
VPS13C-209ENST00000560637 AHNAK2Q8IVF2 5795 aa1.45□□□□□ -2.18
VPS13C-209ENST00000560637 KRTAP20-2Q3LI61 65 aa1.45□□□□□ -2.18
VPS13C-209ENST00000560637 MUC5ACP98088 5654 aa1.43□□□□□ -2.18
VPS13C-209ENST00000560637 KRTAP5-5Q701N2 237 aaPredicted RBP1.43□□□□□ -2.18
VPS13C-209ENST00000560637 KRTAP5-11Q6L8G4 156 aa1.4□□□□□ -2.19
VPS13C-209ENST00000560637 KRTAP5-1Q6L8H4 278 aa1.37□□□□□ -2.19
VPS13C-209ENST00000560637 PRM1P04553 51 aa1.35□□□□□ -2.19
VPS13C-209ENST00000560637 AHNAKQ09666 5890 aaKnown RBP1.34□□□□□ -2.2
VPS13C-209ENST00000560637 LCE1CQ5T751 118 aa1.21□□□□□ -2.22
VPS13C-209ENST00000560637 KRTAP21-2Q3LI59 83 aa0.93□□□□□ -2.26
VPS13C-209ENST00000560637 PHGR1C9JFL3 82 aa0.89□□□□□ -2.27
VPS13C-209ENST00000560637 KRTAP21-1Q3LI58 79 aa0.75□□□□□ -2.29
VPS13C-209ENST00000560637 MUC16Q8WXI7 14507 aa0.73□□□□□ -2.29
Retrieved 78 of 20,778 RNA–protein pairs in 92.9 ms