RNA–Protein interactions for RNA: ENST00000560628.1

LDLR-214, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 535 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-214ENST00000560628 A8MU10 97 aa3.67□□□□□ -1.82
LDLR-214ENST00000560628 A0A1B0GU69 56 aa3.66□□□□□ -1.82
LDLR-214ENST00000560628 KRTAP23-1A1A580 65 aa3.66□□□□□ -1.82
LDLR-214ENST00000560628 PP632Q6XCG6 107 aa3.65□□□□□ -1.83
LDLR-214ENST00000560628 MT1MQ8N339 61 aa3.63□□□□□ -1.83
LDLR-214ENST00000560628 MT1LQ93083 61 aa3.63□□□□□ -1.83
LDLR-214ENST00000560628 LCE1DQ5T752 114 aa3.62□□□□□ -1.83
LDLR-214ENST00000560628 LCE3AQ5TA76 89 aa3.61□□□□□ -1.83
LDLR-214ENST00000560628 MT4P47944 62 aa3.6□□□□□ -1.83
LDLR-214ENST00000560628 ATP5EP56381 51 aaPredicted RBP3.6□□□□□ -1.83
LDLR-214ENST00000560628 KRTAP4-3Q9BYR4 195 aa3.6□□□□□ -1.83
LDLR-214ENST00000560628 C10orf95Q9H7T3 257 aa3.6□□□□□ -1.83
LDLR-214ENST00000560628 TNP1P09430 55 aa3.59□□□□□ -1.83
LDLR-214ENST00000560628 LCE4AQ5TA78 99 aa3.58□□□□□ -1.84
LDLR-214ENST00000560628 PRAC1Q96KF2 57 aa3.52□□□□□ -1.85
LDLR-214ENST00000560628 PRR15LQ9BU68 103 aa3.5□□□□□ -1.85
LDLR-214ENST00000560628 KRTAP5-4Q6L8H1 288 aa3.49□□□□□ -1.85
LDLR-214ENST00000560628 KRTAP4-6Q9BYQ5 205 aa3.49□□□□□ -1.85
LDLR-214ENST00000560628 KRTAP4-7Q9BYR0 210 aa3.49□□□□□ -1.85
LDLR-214ENST00000560628 HMCN1Q96RW7 5635 aa3.49□□□□□ -1.85
LDLR-214ENST00000560628 KRTAP12-3P60328 96 aa3.46□□□□□ -1.86
LDLR-214ENST00000560628 LINC01558Q9Y6Z2 57 aa3.46□□□□□ -1.86
LDLR-214ENST00000560628 K7ERS5 55 aa3.45□□□□□ -1.86
LDLR-214ENST00000560628 AHNAK2Q8IVF2 5795 aa3.43□□□□□ -1.86
LDLR-214ENST00000560628 Q1T7F1 81 aa3.42□□□□□ -1.86
LDLR-214ENST00000560628 LUZP6Q538Z0 58 aa3.42□□□□□ -1.86
LDLR-214ENST00000560628 UQCR11O14957 56 aa3.39□□□□□ -1.87
LDLR-214ENST00000560628 KRTAP5-10Q6L8G5 202 aa3.39□□□□□ -1.87
LDLR-214ENST00000560628 A6NED7 52 aa3.36□□□□□ -1.87
LDLR-214ENST00000560628 MIR22HGQ0VDD5 57 aa3.32□□□□□ -1.88
LDLR-214ENST00000560628 KRTAP25-1Q3LHN0 102 aa3.32□□□□□ -1.88
LDLR-214ENST00000560628 KRTAP20-2Q3LI61 65 aa3.32□□□□□ -1.88
LDLR-214ENST00000560628 KRTAP5-7Q6L8G8 165 aa3.32□□□□□ -1.88
LDLR-214ENST00000560628 KRTAP5-5Q701N2 237 aaPredicted RBP3.32□□□□□ -1.88
LDLR-214ENST00000560628 LOC100996750A0A140TA64 210 aa3.31□□□□□ -1.88
LDLR-214ENST00000560628 KRTAP5-3Q6L8H2 238 aa3.3□□□□□ -1.88
LDLR-214ENST00000560628 ROMO1P60602 79 aa3.29□□□□□ -1.88
LDLR-214ENST00000560628 CDC42SE1Q9NRR8 79 aa3.29□□□□□ -1.88
LDLR-214ENST00000560628 SPRR5A0A1B0GTR4 108 aa3.28□□□□□ -1.88
LDLR-214ENST00000560628 KRTAP12-4P60329 112 aa3.28□□□□□ -1.88
LDLR-214ENST00000560628 KRTAP15-1Q3LI76 137 aa3.21□□□□□ -1.9
LDLR-214ENST00000560628 KRTAP19-4Q3LI73 84 aa3.2□□□□□ -1.9
LDLR-214ENST00000560628 LCE3CQ5T5A8 94 aa3.18□□□□□ -1.9
LDLR-214ENST00000560628 SYNE1Q8NF91 8797 aaKnown RBP3.17□□□□□ -1.9
LDLR-214ENST00000560628 KRTAP6-1Q3LI64 71 aa3.09□□□□□ -1.91
LDLR-214ENST00000560628 MT1AP04731 61 aa3.08□□□□□ -1.92
LDLR-214ENST00000560628 NDUFAF8A1L188 74 aa3.05□□□□□ -1.92
LDLR-214ENST00000560628 KRTAP4-11Q9BYQ6 195 aa3.05□□□□□ -1.92
LDLR-214ENST00000560628 KRTAP5-2Q701N4 177 aa3.04□□□□□ -1.92
LDLR-214ENST00000560628 KRTAP9-6A8MVA2 160 aa3.02□□□□□ -1.93
LDLR-214ENST00000560628 KRTAP9-4Q9BYQ2 154 aa3□□□□□ -1.93
LDLR-214ENST00000560628 KRTAP6-2Q3LI66 62 aa2.97□□□□□ -1.93
LDLR-214ENST00000560628 KRTAP5-8O75690 187 aa2.94□□□□□ -1.94
LDLR-214ENST00000560628 AHNAKQ09666 5890 aaKnown RBP2.93□□□□□ -1.94
LDLR-214ENST00000560628 MUC5ACP98088 5654 aa2.91□□□□□ -1.94
LDLR-214ENST00000560628 MUC5BQ9HC84 5762 aaPredicted RBP2.88□□□□□ -1.95
LDLR-214ENST00000560628 OBSCNQ5VST9 7968 aa2.85□□□□□ -1.95
LDLR-214ENST00000560628 MT3P25713 68 aa2.83□□□□□ -1.96
LDLR-214ENST00000560628 KRTAP9-9Q9BYP9 154 aa2.82□□□□□ -1.96
LDLR-214ENST00000560628 KRTAP5-1Q6L8H4 278 aa2.76□□□□□ -1.97
LDLR-214ENST00000560628 INE1O15225 51 aa2.7□□□□□ -1.98
LDLR-214ENST00000560628 LCE1EQ5T753 118 aa2.59□□□□□ -1.99
LDLR-214ENST00000560628 LCE1BQ5T7P3 118 aa2.51□□□□□ -2.01
LDLR-214ENST00000560628 KRTAP4-2Q9BYR5 136 aa2.48□□□□□ -2.01
LDLR-214ENST00000560628 LCE1CQ5T751 118 aa2.41□□□□□ -2.02
LDLR-214ENST00000560628 KRTAP4-12Q9BQ66 201 aa2.32□□□□□ -2.04
LDLR-214ENST00000560628 LCE3DQ9BYE3 92 aa2.28□□□□□ -2.04
LDLR-214ENST00000560628 KRTAP5-11Q6L8G4 156 aa2.18□□□□□ -2.06
LDLR-214ENST00000560628 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.16□□□□□ -2.06
LDLR-214ENST00000560628 LCE1FQ5T754 118 aa2.14□□□□□ -2.07
LDLR-214ENST00000560628 LCE3EQ5T5B0 92 aa2.12□□□□□ -2.07
LDLR-214ENST00000560628 KRTAP21-2Q3LI59 83 aa2.02□□□□□ -2.09
LDLR-214ENST00000560628 PHGR1C9JFL3 82 aa1.99□□□□□ -2.09
LDLR-214ENST00000560628 KRTAP4-4Q9BYR3 166 aa1.91□□□□□ -2.1
LDLR-214ENST00000560628 MUC19Q7Z5P9 8384 aa1.77□□□□□ -2.13
LDLR-214ENST00000560628 PRM1P04553 51 aa1.56□□□□□ -2.16
LDLR-214ENST00000560628 KRTAP21-1Q3LI58 79 aa1.5□□□□□ -2.17
LDLR-214ENST00000560628 MUC16Q8WXI7 14507 aa1.27□□□□□ -2.21
Retrieved 78 of 20,778 RNA–protein pairs in 10.5 ms